RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 HES2Q9Y543 173 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 FAM187AA6NFU0 413 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 PQBP1O60828 265 aaKnown RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 PHF2O75151 1096 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 PYGMP11217 842 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 DR1Q01658 176 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 CNGA2Q16280 664 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 TWF2Q6IBS0 349 aaKnown RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 ZNF771Q7L3S4 317 aaPredicted RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 PHLDB2Q86SQ0 1253 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 SLC13A5Q86YT5 568 aaPredicted RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 GSPT2Q8IYD1 628 aaKnown RBP17.82■□□□□ 0.44
LDLR-206ENST00000557958 ELOVL4Q9GZR5 314 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 PARP2Q9UGN5 583 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 AMACRQ9UHK6 382 aa17.82■□□□□ 0.44
LDLR-206ENST00000557958 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.82■□□□□ 0.44
LDLR-206ENST00000557958 TMEM191CA6NGB0 347 aa17.81■□□□□ 0.44
LDLR-206ENST00000557958 KCNE1P15382 129 aa17.81■□□□□ 0.44
LDLR-206ENST00000557958 PIGHQ14442 188 aaPredicted RBP17.81■□□□□ 0.44
LDLR-206ENST00000557958 PKN2Q16513 984 aaKnown RBP17.81■□□□□ 0.44
LDLR-206ENST00000557958 DENND1BQ6P3S1 775 aa17.81■□□□□ 0.44
LDLR-206ENST00000557958 SND1Q7KZF4 910 aaKnown RBP eCLIP17.81■□□□□ 0.441e-9■■□□□ 13.1
LDLR-206ENST00000557958 SLC43A3Q8NBI5 491 aa17.81■□□□□ 0.44
LDLR-206ENST00000557958 TRIM7Q9C029 511 aa17.81■□□□□ 0.44
LDLR-206ENST00000557958 MED4Q9NPJ6 270 aa17.81■□□□□ 0.44
LDLR-206ENST00000557958 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.81■□□□□ 0.44
LDLR-206ENST00000557958 CKBP12277 381 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 CYP3A5P20815 502 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 CD52P31358 61 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 NDST1P52848 882 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 GSCP56915 257 aaPredicted RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 MGAT3Q09327 533 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 IPO4Q8TEX9 1081 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 C18orf8Q96DM3 657 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 ZMAT2Q96NC0 199 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 MCEEQ96PE7 176 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 HINFPQ9BQA5 517 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 FAM114A2Q9NRY5 505 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 RNF19AQ9NV58 838 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 NFU1Q9UMS0 254 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 SNX9Q9Y5X1 595 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 M0QYV0 167 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 AKAP5P24588 427 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 SSR1P43307 286 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 CARSP49589 748 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 HLTFQ14527 1009 aaKnown RBP eCLIP17.8■□□□□ 0.44
LDLR-206ENST00000557958 XKR4Q5GH76 650 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 C9orf57Q5W0N0 161 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 LLGL2Q6P1M3 1020 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 ADAT2Q7Z6V5 191 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 RPAINQ86UA6 219 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 KATNAL2Q8IYT4 538 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 WDTC1Q8N5D0 677 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 CASKIN2Q8WXE0 1202 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 MAGOHBQ96A72 148 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 UBXN6Q9BZV1 441 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 AGO3Q9H9G7 860 aaKnown RBP17.8■□□□□ 0.44
LDLR-206ENST00000557958 CHST12Q9NRB3 414 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 TUBGCP4Q9UGJ1 667 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 HMGXB4Q9UGU5 601 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 HPCAL4Q9UM19 191 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 IPPQ9Y573 584 aa17.8■□□□□ 0.44
LDLR-206ENST00000557958 SMIM28A0A1B0GU29 152 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 TCRBV5S1A1TA0A578 114 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 ESYT3A0FGR9 886 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 O00370 1275 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 GPR182O15218 404 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 MICAL2O94851 1124 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 GBP1P32455 592 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 FNTAP49354 379 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 SNX16P57768 344 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 ZNF268Q14587 947 aaPredicted RBP17.79■□□□□ 0.44
LDLR-206ENST00000557958 TRIM71Q2Q1W2 868 aaKnown RBP17.79■□□□□ 0.44
LDLR-206ENST00000557958 FBXO47Q5MNV8 452 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 UBXN11Q5T124 520 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 LRRC38Q5VT99 294 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 UNC93AQ86WB7 457 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 NIPA2Q8N8Q9 360 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 DIS3LQ8TF46 1054 aaKnown RBP17.79■□□□□ 0.44
LDLR-206ENST00000557958 TWNKQ96RR1 684 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 HOMER3Q9NSC5 361 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 PCYOX1Q9UHG3 505 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 PADI3Q9ULW8 664 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 FRMPD3Q5JV73 1810 aa17.79■□□□□ 0.44
LDLR-206ENST00000557958 PODXLO00592 558 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 FSCN2O14926 492 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 TTI1O43156 1089 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 PSMC1P62191 440 aaKnown RBP17.78■□□□□ 0.44
LDLR-206ENST00000557958 CYP1B1Q16678 543 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 PTPN20Q4JDL3 420 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 ODF2Q5BJF6 829 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 GLRA4Q5JXX5 417 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 LCLAT1Q6UWP7 414 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 C12orf50Q8NA57 414 aaPredicted RBP17.78■□□□□ 0.44
LDLR-206ENST00000557958 EXD1Q8NHP7 514 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 FNIP1Q8TF40 1166 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 DDX27Q96GQ7 796 aaKnown RBP17.78■□□□□ 0.44
LDLR-206ENST00000557958 RBM41Q96IZ5 413 aaKnown RBP17.78■□□□□ 0.44
LDLR-206ENST00000557958 KLK14Q9P0G3 267 aa17.78■□□□□ 0.44
LDLR-206ENST00000557958 ZSCAN5CA6NGD5 496 aaPredicted RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 101 ms