RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ATP2C2O75185 946 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 ADH1AP07327 375 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 OR4Q2P0C623 313 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 IGFBP4P22692 258 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 MRE11P49959 708 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 RAD23BP54727 409 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 SLC39A12Q504Y0 691 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 FIGNQ5HY92 759 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 INTS6LQ5JSJ4 861 aaKnown RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 SLC8B1Q6J4K2 584 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 Q7L0L9 218 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 RBM23Q86U06 439 aaKnown RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 LRRTM3Q86VH5 581 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 PALB2Q86YC2 1186 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 DCP1BQ8IZD4 617 aaKnown RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 CRYBG2Q8N1P7 616 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 SLC4A11Q8NBS3 891 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 RBBP8NLQ8NC74 664 aaPredicted RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 B3GALNT2Q8NCR0 500 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 CPLX3Q8WVH0 158 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 SHC3Q92529 594 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 PPP2R3CQ969Q6 453 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 IQCDQ96DY2 449 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 HEXIM2Q96MH2 286 aaKnown RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 TWNKQ96RR1 684 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 GAS2L1Q99501 681 aaPredicted RBP12.35□□□□□ -0.43
YBX3-213ENST00000542641 ELOVL4Q9GZR5 314 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 ZCWPW1Q9H0M4 648 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 TLE6Q9H808 572 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 CRTAC1Q9NQ79 661 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 LMCD1Q9NZU5 365 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 GTF3C4Q9UKN8 822 aa12.35□□□□□ -0.43
YBX3-213ENST00000542641 RNF225M0QZC1 329 aaPredicted RBP12.34□□□□□ -0.43
YBX3-213ENST00000542641 PER2O15055 1255 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 CYP26A1O43174 497 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 PAEPP09466 180 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 PNMA6AP0CW24 399 aaPredicted RBP12.34□□□□□ -0.43
YBX3-213ENST00000542641 STAT1P42224 750 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 CDR1P51861 262 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 JAM2P57087 298 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 ROR1Q01973 937 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 SMARCB1Q12824 385 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 GPR17Q13304 367 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 RAB33AQ14088 237 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 ADGRE1Q14246 886 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 MAPRE1Q15691 268 aaKnown RBP12.34□□□□□ -0.43
YBX3-213ENST00000542641 NFE2Q16621 373 aaPredicted RBP12.34□□□□□ -0.43
YBX3-213ENST00000542641 MDH1BQ5I0G3 518 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 SMYD5Q6GMV2 418 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 FAM171BQ6P995 826 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 TMC6Q7Z403 805 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 ADGRD2Q7Z7M1 963 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 PPFIBP1Q86W92 1011 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 DRC7Q8IY82 874 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 FAM71AQ8IYT1 594 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 C12orf29Q8N999 325 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 ZNF397Q8NF99 534 aaPredicted RBP12.34□□□□□ -0.43
YBX3-213ENST00000542641 MYCBPAPQ8TBZ2 947 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 LPIN3Q9BQK8 851 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 EDEM3Q9BZQ6 932 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 TTYH3Q9C0H2 523 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 GPR88Q9GZN0 384 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 TMLHEQ9NVH6 421 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 CAPN11Q9UMQ6 739 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 CNTN6Q9UQ52 1028 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 LUC7L2Q9Y383 392 aaKnown RBP12.34□□□□□ -0.43
YBX3-213ENST00000542641 CDH23Q9H251 3354 aa12.34□□□□□ -0.43
YBX3-213ENST00000542641 VWA8A3KMH1 1905 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 A0A1W2PQJ5 194 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 WDR27A2RRH5 827 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 TGM5O43548 720 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 CLASP2O75122 1294 aaKnown RBP12.33□□□□□ -0.44
YBX3-213ENST00000542641 GFPT2O94808 682 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 GYPCP04921 128 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 TPM1P09493 284 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 CD19P15391 556 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 POU3F3P20264 500 aaPredicted RBP12.33□□□□□ -0.44
YBX3-213ENST00000542641 SOX5P35711 763 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 NRIP1P48552 1158 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 FXR1P51114 621 aaKnown RBP eCLIP12.33□□□□□ -0.44
YBX3-213ENST00000542641 ZNF132P52740 706 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 CYP27A1Q02318 531 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 PTK2Q05397 1052 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 TRIM14Q14142 442 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 CCDC142Q17RM4 750 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 TPGS2Q68CL5 300 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 RNF19BQ6ZMZ0 732 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 SPATA2LQ8IUW3 424 aaPredicted RBP12.33□□□□□ -0.44
YBX3-213ENST00000542641 DEFB123Q8N688 67 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 ZNF461Q8TAF7 563 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 BAP1Q92560 729 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 PGLYRP2Q96PD5 576 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 PKMYT1Q99640 499 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 NSUN3Q9H649 340 aaKnown RBP12.33□□□□□ -0.44
YBX3-213ENST00000542641 FAM49BQ9NUQ9 324 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 KIAA1257Q9ULG3 409 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 MYO6Q9UM54 1294 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 PCDHB5Q9Y5E4 795 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 MTCH2Q9Y6C9 303 aa12.33□□□□□ -0.44
YBX3-213ENST00000542641 LRRC53A6NM62 1247 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms