RNA–Protein interactions for RNA: YMR200W

ROT1, Transcript of Molecular chaperone involved in protein folding in ER, yeastyeast

Gene ROT1, Length 771 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
ROT1YMR200W TRM3Q07527 1436 aa3.61□□□□□ -1.83
ROT1YMR200W RAD6P06104 172 aa3.6□□□□□ -1.83
ROT1YMR200W HSP12P22943 109 aaKnown RBP3.6□□□□□ -1.83
ROT1YMR200W ETR1P38071 380 aa3.6□□□□□ -1.83
ROT1YMR200W YEL028WP39989 153 aa3.6□□□□□ -1.83
ROT1YMR200W NSA2P40078 261 aaKnown RBP3.6□□□□□ -1.83
ROT1YMR200W GVP36P40531 326 aaKnown RBP3.6□□□□□ -1.83
ROT1YMR200W ECO1P43605 281 aa3.6□□□□□ -1.83
ROT1YMR200W EMC4P53073 190 aa3.6□□□□□ -1.83
ROT1YMR200W MRPS16Q02608 121 aa3.6□□□□□ -1.83
ROT1YMR200W SYM1Q06563 197 aa3.6□□□□□ -1.83
ROT1YMR200W FCF2Q12035 217 aaPredicted RBP3.6□□□□□ -1.83
ROT1YMR200W RTR2Q12378 196 aa3.6□□□□□ -1.83
ROT1YMR200W MET5P47169 1442 aa3.6□□□□□ -1.83
ROT1YMR200W POL1P13382 1468 aa3.6□□□□□ -1.83
ROT1YMR200W CDC25P04821 1589 aa3.59□□□□□ -1.83
ROT1YMR200W DNF1P32660 1571 aa3.59□□□□□ -1.83
ROT1YMR200W POR1P04840 283 aaKnown RBP3.59□□□□□ -1.83
ROT1YMR200W YHR032W-AP0C5N6 59 aa3.59□□□□□ -1.83
ROT1YMR200W YPT31P38555 223 aaKnown RBP3.59□□□□□ -1.83
ROT1YMR200W GON7P46984 123 aa3.59□□□□□ -1.83
ROT1YMR200W SMD1Q02260 146 aaPredicted RBP3.59□□□□□ -1.83
ROT1YMR200W FCF1Q05498 189 aaPredicted RBP3.59□□□□□ -1.83
ROT1YMR200W KTI11Q3E840 82 aa3.59□□□□□ -1.83
ROT1YMR200W AUS1Q08409 1394 aa3.59□□□□□ -1.83
ROT1YMR200W UMP1P38293 148 aa3.58□□□□□ -1.84
ROT1YMR200W CTR2P38865 189 aa3.58□□□□□ -1.84
ROT1YMR200W MOB1P40484 314 aa3.58□□□□□ -1.84
ROT1YMR200W PAC10P48363 199 aa3.58□□□□□ -1.84
ROT1YMR200W HUT1Q12520 339 aa3.58□□□□□ -1.84
ROT1YMR200W SPS2P08459 502 aa3.57□□□□□ -1.84
ROT1YMR200W SPC25P40014 221 aa3.57□□□□□ -1.84
ROT1YMR200W CUP9P41817 306 aa3.57□□□□□ -1.84
ROT1YMR200W YGL230CP53074 147 aa3.57□□□□□ -1.84
ROT1YMR200W GEP7P53171 287 aa3.57□□□□□ -1.84
ROT1YMR200W YGR026WP53217 278 aa3.57□□□□□ -1.84
ROT1YMR200W ELC1Q03071 99 aa3.57□□□□□ -1.84
ROT1YMR200W RNH202Q05635 350 aa3.57□□□□□ -1.84
ROT1YMR200W MEU1Q07938 337 aaKnown RBP RIP-Chip data3.57□□□□□ -1.84not detected
ROT1YMR200W ATP20Q12233 115 aa3.57□□□□□ -1.84
ROT1YMR200W SMC4Q12267 1418 aa3.57□□□□□ -1.84
ROT1YMR200W MMS22Q06164 1454 aa3.56□□□□□ -1.84
ROT1YMR200W VAR1P02381 398 aa3.56□□□□□ -1.84
ROT1YMR200W MRS4P23500 304 aa3.56□□□□□ -1.84
ROT1YMR200W YER135CP40082 130 aa3.56□□□□□ -1.84
ROT1YMR200W YNR062CP53748 327 aa3.56□□□□□ -1.84
ROT1YMR200W YMR295CQ03559 197 aa3.56□□□□□ -1.84
ROT1YMR200W TVP18Q04767 167 aa3.56□□□□□ -1.84
ROT1YMR200W ANT1Q06497 328 aa3.56□□□□□ -1.84
ROT1YMR200W SAS5Q99314 248 aa3.56□□□□□ -1.84
ROT1YMR200W TY1B-HO13535 1793 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-LR1P0C2J3 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-FP0CX63 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-GR2P0CX64 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-CP25384 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-DR2Q03494 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY1B-DR1Q03855 1755 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-DR3Q07791 1770 aaKnown RBP3.56□□□□□ -1.84
ROT1YMR200W TY2B-OR1Q12113 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-DR1Q12472 1770 aa3.56□□□□□ -1.84
ROT1YMR200W TY2B-OR2Q12501 1770 aa3.56□□□□□ -1.84
ROT1YMR200W RKR1Q04781 1562 aa3.55□□□□□ -1.84
ROT1YMR200W HIS3P06633 220 aa3.55□□□□□ -1.84
ROT1YMR200W HAP2P06774 265 aa3.55□□□□□ -1.84
ROT1YMR200W ANB1P19211 157 aa3.55□□□□□ -1.84
ROT1YMR200W SFT2P38166 215 aa3.55□□□□□ -1.84
ROT1YMR200W GAT4P40569 121 aa3.55□□□□□ -1.84
ROT1YMR200W PHS1P40857 217 aa3.55□□□□□ -1.84
ROT1YMR200W EAF6P47128 113 aa3.55□□□□□ -1.84
ROT1YMR200W YDR102CQ03864 110 aa3.55□□□□□ -1.84
ROT1YMR200W YLR042CQ07990 161 aa3.55□□□□□ -1.84
ROT1YMR200W TY1B-BRQ12193 1756 aa3.55□□□□□ -1.84
ROT1YMR200W TY1B-GR3Q12316 1755 aa3.55□□□□□ -1.84
ROT1YMR200W TY1B-ORQ92393 1755 aa3.55□□□□□ -1.84
ROT1YMR200W STU1P38198 1513 aa3.54□□□□□ -1.84
ROT1YMR200W LTE1P07866 1435 aa3.54□□□□□ -1.84
ROT1YMR200W MSW1P04803 379 aa3.54□□□□□ -1.84
ROT1YMR200W DDR48P18899 430 aaKnown RBP3.54□□□□□ -1.84
ROT1YMR200W RPB11P38902 120 aa3.54□□□□□ -1.84
ROT1YMR200W RIO2P40160 425 aaKnown RBP3.54□□□□□ -1.84
ROT1YMR200W YAE1P47118 141 aaPredicted RBP3.54□□□□□ -1.84
ROT1YMR200W YNR064CP53750 290 aa3.54□□□□□ -1.84
ROT1YMR200W RRT7Q07829 113 aa3.54□□□□□ -1.84
ROT1YMR200W TRM732Q03496 1420 aa3.53□□□□□ -1.84
ROT1YMR200W RPS19AP07280 144 aaKnown RBP3.53□□□□□ -1.84
ROT1YMR200W RPS19BP07281 144 aaPredicted RBP3.53□□□□□ -1.84
ROT1YMR200W GPA2P10823 449 aa3.53□□□□□ -1.84
ROT1YMR200W YKR032WP36127 104 aa3.53□□□□□ -1.84
ROT1YMR200W RRT1P38192 103 aa3.53□□□□□ -1.84
ROT1YMR200W SMD3P43321 101 aaKnown RBP3.53□□□□□ -1.84
ROT1YMR200W YFR045WP43617 309 aa3.53□□□□□ -1.84
ROT1YMR200W MPC3P53311 146 aa3.53□□□□□ -1.84
ROT1YMR200W SHH3Q04487 196 aa3.53□□□□□ -1.84
ROT1YMR200W OCA6Q12454 224 aa3.53□□□□□ -1.84
ROT1YMR200W PAM17P36147 197 aa3.52□□□□□ -1.85
ROT1YMR200W SPG1P50088 95 aa3.52□□□□□ -1.85
ROT1YMR200W LIP1Q03579 150 aa3.52□□□□□ -1.85
ROT1YMR200W RIM9Q04734 239 aa3.52□□□□□ -1.85
ROT1YMR200W RPA190P10964 1664 aaKnown RBP3.52□□□□□ -1.85
ROT1YMR200W TY2B-BQ12491 1770 aa3.51□□□□□ -1.85
Retrieved 100 of 5,963 RNA–protein pairs in 62.8 ms