RNA–Protein interactions for RNA: YFL008W

SMC1, Transcript of Subunit of the multiprotein cohesin complex, yeast

Gene SMC1, Length 3,678 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SMC1	YFL008W	YHR045W	P38775	560 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	SMD3	P43321	101 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	SBH2	P52871	88 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	ERG25	P53045	309 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	FMP41	P53889	259 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	AIM11	P87275	137 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YPL067C	Q02754	198 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	TMA23	Q03525	211 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	RFU1	Q08003	200 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MCP1	Q12106	302 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	DGK1	Q12382	290 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	GEP5	Q12393	293 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YLR146W-A	Q2V2P1	62 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YLR363W-A	Q3E747	85 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	RPS22B	Q3E7Y3	130 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	YBL112C	Q3E7Y4	105 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YPL229W	Q99395	206 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MSB2	P32334	1306 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	RHO1	P06780	209 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	PUT1	P09368	476 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	RPL35A	P0CX84	120 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	RPL35B	P0CX85	120 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	TIR1	P10863	254 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	GRX2	P17695	143 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	PET9	P18239	318 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	YGL010W	P25338	174 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	UGX2	P32772	223 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	ALK2	P32789	676 aa	Predicted RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	SFC1	P33303	322 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	SFK1	P35735	353 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	DER1	P38307	211 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	RPL14B	P38754	138 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	FYV4	P38783	130 aa	Predicted RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	SRP14	P38985	146 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MOB1	P40484	314 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	SYS1	P41544	203 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	VMA21	P41806	77 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	PAU5	P43575	122 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YJR012C	P47087	207 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	MIC27	P50945	234 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	VEL1	P53058	206 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YGL118C	P53132	145 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	PNC1	P53184	216 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	GRX5	Q02784	150 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	SNO1	Q03144	224 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	VBA1	Q04301	562 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YMR090W	Q04304	227 aa	Known RBP	0.82	□□□□□ -2.28
SMC1	YFL008W	UPS1	Q05776	175 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	GRX8	Q05926	109 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	SWC7	Q06707	132 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YOR268C	Q08734	132 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YDR262W	Q12331	272 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	PRM7	Q12459	698 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	IZH4	Q99393	312 aa		0.82	□□□□□ -2.28
SMC1	YFL008W	YEL009C-A	A0A023PZF2	135 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	STE2	D6VTK4	431 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YFR010W-A	P0C5N0	62 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	URA5	P13298	226 aa	Known RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	INO4	P13902	151 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	TAH1	P25638	111 aa	Predicted RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	RFA3	P26755	122 aa	Known RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	OAC1	P32332	324 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	SGE1	P33335	543 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	MSN4	P33749	630 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.81	□□□□□ -2.28	not detected
SMC1	YFL008W	YKR070W	P36151	352 aa	Known RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	YBR096W	P38256	230 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YPT35	P38815	214 aa	Known RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	YIL054W	P40524	105 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YJR056C	P47115	236 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YGL159W	P53110	370 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	ERV29	P53337	310 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YIP3	P53633	176 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	AAH1	P53909	347 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YPL077C	Q02831	240 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	CAB5	Q03941	241 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	SEI1	Q06058	285 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YPR195C	Q06594	109 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YOR292C	Q08743	309 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	ATG5	Q12380	294 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YPR014C	Q6B0W2	109 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	COX9	P07255	59 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	MATALPHA1	P0CY06	175 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	HMLALPHA1	P0CY07	175 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	SEC22	P22214	214 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	NHP2	P32495	156 aa	Predicted RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	PAU16	P35994	123 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	ATG12	P38316	186 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	MED6	P38782	295 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YHR138C	P38841	114 aa	Predicted RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	SNU13	P39990	126 aa	Known RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	ARP3	P47117	449 aa	Known RBP	0.81	□□□□□ -2.28
SMC1	YFL008W	BXI1	P48558	297 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	BOL2	P53082	120 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	CAX4	P53223	239 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	DAD3	P69850	94 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	CYT2	Q00873	224 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	GOT1	Q03554	138 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	YDR391C	Q04170	232 aa		0.81	□□□□□ -2.28
SMC1	YFL008W	RIM9	Q04734	239 aa		0.81	□□□□□ -2.28

Retrieved 100 of 5,963 RNA–protein pairs in 27.5 ms