RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 DDX23Q9BUQ8 820 aaKnown RBP15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 TRMT61BQ9BVS5 477 aaKnown RBP15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 LRRC3Q9BY71 257 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 FGFBP2Q9BYJ0 223 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 TBC1D17Q9HA65 648 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 PDE11AQ9HCR9 933 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 ABCB6Q9NP58 842 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 SLC27A5Q9Y2P5 690 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 PCDHB5Q9Y5E4 795 aa15.64■□□□□ 0.09
NIF3L1-205ENST00000409588 NOTCH4Q99466 2003 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 MYH15Q9Y2K3 1946 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 GOLGA8IPA6NC78 632 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 GOLGA8JA6NMD2 632 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 H0Y858 1186 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 MAN2B1O00754 1011 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 PI15O43692 258 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 KIF20AO95235 890 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 PCSK1P29120 753 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 HOXD13P35453 343 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 PKP1Q13835 747 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 MLF2Q15773 248 aaPredicted RBP15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 TAF12Q16514 161 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 SNRNP35Q16560 246 aaKnown RBP15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 KNOP1Q1ED39 458 aaKnown RBP15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 ARHGAP15Q53QZ3 475 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 TANGO2Q6ICL3 276 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 MFSD6LQ8IWD5 586 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 OR10T2Q8NGX3 314 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 CXorf38Q8TB03 319 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 LEO1Q8WVC0 666 aaPredicted RBP15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 SCFD1Q8WVM8 642 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 TCEAL4Q96EI5 215 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 CCDC34Q96HJ3 373 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 SPATA32Q96LK8 384 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 CEP295NLQ96MC4 621 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 FNBP1Q96RU3 617 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 KXD1Q9BQD3 176 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 SEMA4AQ9H3S1 761 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 AGPAT3Q9NRZ7 376 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 OBP2AQ9NY56 170 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 BOLA1Q9Y3E2 137 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 DOCK6Q96HP0 2047 aa15.63■□□□□ 0.09
NIF3L1-205ENST00000409588 GABRDO14764 452 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 TGFB1I1O43294 461 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 MOSPD3O75425 235 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 KRT19P08727 400 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 HAPLN1P10915 354 aaPredicted RBP15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 CDC25CP30307 473 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 NBL1P41271 181 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 CCR2P41597 374 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 AP3M2P53677 418 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 SNW1Q13573 536 aaKnown RBP15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 MAPRE1Q15691 268 aaKnown RBP15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 MGAT5BQ3V5L5 792 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 ZNF852Q6ZMS4 543 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 HS6ST3Q8IZP7 471 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 TMEM130Q8N3G9 435 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 PDCL2Q8N4E4 241 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 SPRYD3Q8NCJ5 442 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 FAM200AQ8TCP9 573 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 NOC3LQ8WTT2 800 aaKnown RBP15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 CCDC47Q96A33 483 aaKnown RBP15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 PAGE5Q96GU1 130 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 DNAJC25Q9H1X3 360 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 CRISPLD1Q9H336 500 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 BRD9Q9H8M2 597 aa15.62■□□□□ 0.09
NIF3L1-205ENST00000409588 ANK1P16157 1881 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 FAM237AA0A1B0GTK4 181 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 TULP1O00294 542 aaPredicted RBP15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 TNNI1P19237 187 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 FCARP24071 287 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 AFMP43652 599 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 RPL10AP62906 217 aaKnown RBP15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 CUL4BQ13620 913 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 BECN1Q14457 450 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 PSMD6Q15008 389 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 LIMS2Q7Z4I7 341 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 LRRTM3Q86VH5 581 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 TMC8Q8IU68 726 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 CBWD2Q8IUF1 395 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 ZSWIM2Q8NEG5 633 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 PJA1Q8NG27 643 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 SHKBP1Q8TBC3 707 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 ZSCAN18Q8TBC5 510 aaPredicted RBP15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 HPS3Q969F9 1004 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 MSANTD3Q96H12 275 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 FUBP3Q96I24 572 aaKnown RBP eCLIP15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 HPDLQ96IR7 371 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 GCNAQ96QF7 691 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 TMEM209Q96SK2 561 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 KRTAP3-3Q9BYR6 98 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 KRTAP3-2Q9BYR7 98 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 BCO2Q9BYV7 579 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 SLITRK6Q9H5Y7 841 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 SLC39A2Q9NP94 309 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 DDX43Q9NXZ2 648 aaKnown RBP15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 SIX4Q9UIU6 781 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 SNX9Q9Y5X1 595 aa15.61■□□□□ 0.09
NIF3L1-205ENST00000409588 A0A1W2PQ27 194 aa15.6■□□□□ 0.09
NIF3L1-205ENST00000409588 A0A1W2PQ64 194 aa15.6■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms