RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	LHP1	P33399	275 aa	Known RBP	4.4	□□□□□ -1.7
NUP1	YOR098C	SHH4	Q06236	168 aa		4.4	□□□□□ -1.7
NUP1	YOR098C	MAG1	P22134	296 aa	Known RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	GNA1	P43577	159 aa	Predicted RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	MRX11	Q03079	207 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	ERP1	Q05359	219 aa	Known RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	YAL063C-A	Q3E791	96 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	YLR422W	Q06409	1932 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	EMP24	P32803	203 aa	Known RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	HMF1	P40037	129 aa	Known RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	YNL208W	P40159	199 aa	Known RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	CAT5	P41735	233 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	GLR1	P41921	483 aa	Known RBP	4.4	□□□□□ -1.71
NUP1	YOR098C	YGR015C	P53208	328 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	IGO1	P53897	168 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	ATG41	Q12048	136 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	YBL008W-A	Q3E821	79 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	Q0144	Q9ZZW2	109 aa		4.4	□□□□□ -1.71
NUP1	YOR098C	RPL25	P04456	142 aa	Known RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	TMA19	P35691	167 aa	Known RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	HTD2	P38790	280 aa	Known RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	EDC2	P40023	145 aa	Predicted RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	YPL257W	Q08974	193 aa		4.39	□□□□□ -1.71
NUP1	YOR098C	RPS8A	P0CX39	200 aa	Known RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	RPS8B	P0CX40	200 aa	Known RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	SFC1	P33303	322 aa		4.39	□□□□□ -1.71
NUP1	YOR098C	CRH1	P53301	507 aa		4.39	□□□□□ -1.71
NUP1	YOR098C	SPG3	Q04398	127 aa	Predicted RBP	4.39	□□□□□ -1.71
NUP1	YOR098C	SEN15	Q04675	128 aa		4.39	□□□□□ -1.71
NUP1	YOR098C	VMA9	Q3E7B6	73 aa		4.39	□□□□□ -1.71
NUP1	YOR098C	RMD6	P39975	231 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YPL062W	Q02781	134 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	PAL1	Q05518	499 aa	Known RBP	4.38	□□□□□ -1.71
NUP1	YOR098C	NDD1	Q08887	554 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YPR011C	Q12251	326 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YHL044W	P38727	235 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	RPE1	P46969	238 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YGR050C	P53231	118 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	ZEO1	Q08245	113 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YPR145C-A	Q2V2P0	78 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	SCM4	P32564	187 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	SHE1	P38200	338 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YJR015W	P47090	510 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YMR321C	Q04898	105 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	YLR099W-A	Q3E798	87 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	NAG1	Q8TGN9	163 aa		4.38	□□□□□ -1.71
NUP1	YOR098C	PET9	P18239	318 aa	Known RBP	4.37	□□□□□ -1.71
NUP1	YOR098C	CSE2	P33308	149 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	COS8	P38723	381 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	YFL067W	P43537	175 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	RPL2A	P0CX45	254 aa	Known RBP	4.37	□□□□□ -1.71
NUP1	YOR098C	RPL2B	P0CX46	254 aa	Known RBP	4.37	□□□□□ -1.71
NUP1	YOR098C	CPR4	P25334	318 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	SUA7	P29055	345 aa	Predicted RBP	4.37	□□□□□ -1.71
NUP1	YOR098C	YKL102C	P34249	101 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	YBR063C	P38083	404 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	ERV15	P38312	142 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	RNH201	P53942	307 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	YCL001W-A	P87012	153 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	UBC7	Q02159	165 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	YMR320W	Q04897	101 aa		4.37	□□□□□ -1.71
NUP1	YOR098C	CDC7	P06243	507 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	UBI4	P0CG63	381 aa	Known RBP	4.36	□□□□□ -1.71
NUP1	YOR098C	BGL2	P15703	313 aa	Known RBP	4.36	□□□□□ -1.71
NUP1	YOR098C	RPB5	P20434	215 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	SMP1	P38128	452 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	PFS2	P42841	465 aa	Known RBP	4.36	□□□□□ -1.71
NUP1	YOR098C	CCC1	P47818	322 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	RSM27	P53305	110 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	RAV2	Q03956	351 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	YLR179C	Q06252	201 aa	Known RBP	4.36	□□□□□ -1.71
NUP1	YOR098C	ANT1	Q06497	328 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	DGA1	Q08650	418 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	MBF1	O14467	151 aa	Known RBP	4.36	□□□□□ -1.71
NUP1	YOR098C	ATG8	P38182	117 aa	RIP-Chip data	4.36	□□□□□ -1.71	not detected
NUP1	YOR098C	PTH1	P38876	190 aa	Known RBP	4.36	□□□□□ -1.71
NUP1	YOR098C	PGD1	P40356	397 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	DOC1	P53068	250 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	SDT1	P53078	280 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	PSF1	Q12488	208 aa		4.36	□□□□□ -1.71
NUP1	YOR098C	SSS1	P35179	80 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	SOL1	P50278	321 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	TSA2	Q04120	196 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	YMR252C	Q04814	134 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	RAD28	Q12021	506 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	STT4	P37297	1900 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	RPB3	P16370	318 aa	Known RBP	4.35	□□□□□ -1.71
NUP1	YOR098C	OCH1	P31755	480 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	GLC8	P41818	229 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	COS10	P52924	374 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	ERV14	P53173	138 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	AKR2	Q12013	749 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	PRR2	Q12310	699 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	YCL001W-B	Q96VH2	84 aa		4.35	□□□□□ -1.71
NUP1	YOR098C	YGL101W	P53144	215 aa		4.34	□□□□□ -1.71
NUP1	YOR098C	GCV3	P39726	170 aa	Predicted RBP	4.34	□□□□□ -1.71
NUP1	YOR098C	YIL152W	P40455	235 aa		4.34	□□□□□ -1.71
NUP1	YOR098C	SHE2	P36068	246 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.72	not detected
NUP1	YOR098C	ARP3	P47117	449 aa	Known RBP	4.34	□□□□□ -1.72
NUP1	YOR098C	MDM34	P53083	459 aa		4.34	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 45.5 ms