RNA–Protein interactions for RNA: YML029W

USA1, Transcript of Scaffold subunit of the Hrd1p ubiquitin ligase, yeast

Gene USA1, Length 2,517 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
USA1	YML029W	EOS1	P53938	366 aa		3.17	□□□□□ -1.9
USA1	YML029W	YDR415C	Q04033	374 aa	Predicted RBP	3.17	□□□□□ -1.9
USA1	YML029W	YLR179C	Q06252	201 aa	Known RBP	3.17	□□□□□ -1.9
USA1	YML029W	BER1	Q06688	274 aa	Known RBP	3.17	□□□□□ -1.9
USA1	YML029W	ATG5	Q12380	294 aa		3.17	□□□□□ -1.9
USA1	YML029W	YBR255C-A	Q3E776	120 aa		3.17	□□□□□ -1.9
USA1	YML029W	YBR085C-A	O43137	85 aa		3.16	□□□□□ -1.9
USA1	YML029W	ERV1	P27882	189 aa		3.16	□□□□□ -1.9
USA1	YML029W	YKL162C	P36052	402 aa		3.16	□□□□□ -1.9
USA1	YML029W	YPL264C	Q08980	353 aa		3.16	□□□□□ -1.9
USA1	YML029W	FCF2	Q12035	217 aa	Predicted RBP	3.16	□□□□□ -1.9
USA1	YML029W	LSO2	Q3E772	92 aa	Known RBP	3.16	□□□□□ -1.9
USA1	YML029W	PRS4	P38063	326 aa	Predicted RBP	3.16	□□□□□ -1.9
USA1	YML029W	UBC12	P52491	188 aa		3.16	□□□□□ -1.9
USA1	YML029W	TIM44	Q01852	431 aa		3.16	□□□□□ -1.9
USA1	YML029W	HOF1	Q05080	669 aa		3.16	□□□□□ -1.9
USA1	YML029W	MSC3	Q05812	728 aa		3.16	□□□□□ -1.9
USA1	YML029W	SRL1	Q08673	210 aa		3.16	□□□□□ -1.9
USA1	YML029W	AIM45	Q12480	344 aa	Known RBP	3.16	□□□□□ -1.9
USA1	YML029W	CMC2	Q3E7A4	109 aa		3.16	□□□□□ -1.9
USA1	YML029W	COA2	Q3E823	68 aa		3.16	□□□□□ -1.9
USA1	YML029W	YOS1	Q3E834	85 aa		3.16	□□□□□ -1.9
USA1	YML029W	UBI4	P0CG63	381 aa	Known RBP	3.15	□□□□□ -1.91
USA1	YML029W	YKL102C	P34249	101 aa		3.15	□□□□□ -1.91
USA1	YML029W	YEA4	P40004	342 aa		3.15	□□□□□ -1.91
USA1	YML029W	ARP3	P47117	449 aa	Known RBP	3.15	□□□□□ -1.91
USA1	YML029W	BUL1	P48524	976 aa		3.15	□□□□□ -1.91
USA1	YML029W	GLO1	P50107	326 aa		3.15	□□□□□ -1.91
USA1	YML029W	YMR090W	Q04304	227 aa	Known RBP	3.15	□□□□□ -1.91
USA1	YML029W	YHR213W-A	Q8TGT4	77 aa		3.15	□□□□□ -1.91
USA1	YML029W	INO2	P26798	304 aa		3.15	□□□□□ -1.91
USA1	YML029W	PEX7	P39108	375 aa		3.15	□□□□□ -1.91
USA1	YML029W	COX15	P40086	486 aa		3.15	□□□□□ -1.91
USA1	YML029W	YNL194C	P40169	301 aa		3.15	□□□□□ -1.91
USA1	YML029W	YMR082C	Q04276	118 aa		3.15	□□□□□ -1.91
USA1	YML029W	FSH2	Q05015	223 aa		3.15	□□□□□ -1.91
USA1	YML029W	ATP14	Q12349	124 aa		3.15	□□□□□ -1.91
USA1	YML029W	SHG1	P38337	142 aa		3.14	□□□□□ -1.91
USA1	YML029W	GET2	P40056	285 aa		3.14	□□□□□ -1.91
USA1	YML029W	PHO23	P50947	330 aa		3.14	□□□□□ -1.91
USA1	YML029W	YGR050C	P53231	118 aa		3.14	□□□□□ -1.91
USA1	YML029W	SPG4	Q04438	115 aa		3.14	□□□□□ -1.91
USA1	YML029W	GIM5	Q04493	163 aa		3.14	□□□□□ -1.91
USA1	YML029W	URA2	P07259	2214 aa	Known RBP	3.14	□□□□□ -1.91
USA1	YML029W	CGR1	P53188	120 aa		3.14	□□□□□ -1.91
USA1	YML029W	CAF40	P53829	373 aa		3.14	□□□□□ -1.91
USA1	YML029W	PDR17	P53844	350 aa		3.14	□□□□□ -1.91
USA1	YML029W	YCR025C	P25352	136 aa		3.13	□□□□□ -1.91
USA1	YML029W	SDH8	P38345	138 aa		3.13	□□□□□ -1.91
USA1	YML029W	EMC5	P40540	141 aa		3.13	□□□□□ -1.91
USA1	YML029W	YJL213W	P40896	331 aa		3.13	□□□□□ -1.91
USA1	YML029W	HXT14	P42833	540 aa		3.13	□□□□□ -1.91
USA1	YML029W	AGC1	Q12482	902 aa		3.13	□□□□□ -1.91
USA1	YML029W	HTB1	P02293	131 aa	Known RBP	3.13	□□□□□ -1.91
USA1	YML029W	URA5	P13298	226 aa	Known RBP	3.13	□□□□□ -1.91
USA1	YML029W	SIP1	P32578	815 aa		3.13	□□□□□ -1.91
USA1	YML029W	SHB17	P36136	271 aa	Known RBP	3.13	□□□□□ -1.91
USA1	YML029W	YBR292C	P38357	123 aa		3.13	□□□□□ -1.91
USA1	YML029W	PET100	P38958	111 aa		3.13	□□□□□ -1.91
USA1	YML029W	NSA2	P40078	261 aa	Known RBP	3.13	□□□□□ -1.91
USA1	YML029W	CDC40	P40968	455 aa	Predicted RBP	3.13	□□□□□ -1.91
USA1	YML029W	YGR219W	P53307	113 aa		3.13	□□□□□ -1.91
USA1	YML029W	HCH1	P53834	153 aa		3.13	□□□□□ -1.91
USA1	YML029W	APJ1	P53940	528 aa		3.13	□□□□□ -1.91
USA1	YML029W	YCL001W-A	P87012	153 aa		3.13	□□□□□ -1.91
USA1	YML029W	YML108W	Q03759	105 aa		3.13	□□□□□ -1.91
USA1	YML029W	YMR166C	Q03829	368 aa		3.13	□□□□□ -1.91
USA1	YML029W	TMA10	Q06177	86 aa		3.13	□□□□□ -1.91
USA1	YML029W	ARR3	Q06598	404 aa		3.13	□□□□□ -1.91
USA1	YML029W	PRR2	Q12310	699 aa		3.13	□□□□□ -1.91
USA1	YML029W	YLR415C	O13578	112 aa		3.12	□□□□□ -1.91
USA1	YML029W	COX2	P00410	251 aa		3.12	□□□□□ -1.91
USA1	YML029W	ZRC1	P20107	442 aa		3.12	□□□□□ -1.91
USA1	YML029W	UPS2	P35200	230 aa		3.12	□□□□□ -1.91
USA1	YML029W	DAD2	P36162	133 aa		3.12	□□□□□ -1.91
USA1	YML029W	MIC12	P38341	106 aa		3.12	□□□□□ -1.91
USA1	YML029W	DOG2	P38773	246 aa		3.12	□□□□□ -1.91
USA1	YML029W	DOG1	P38774	246 aa		3.12	□□□□□ -1.91
USA1	YML029W	LSM4	P40070	187 aa	Known RBP	3.12	□□□□□ -1.91
USA1	YML029W	DFG10	P40526	253 aa		3.12	□□□□□ -1.91
USA1	YML029W	YNR066C	P53752	436 aa		3.12	□□□□□ -1.91
USA1	YML029W	ODC1	Q03028	310 aa		3.12	□□□□□ -1.91
USA1	YML029W	YNK1	P36010	153 aa	Known RBP	3.12	□□□□□ -1.91
USA1	YML029W	YAR068W	P39564	161 aa		3.12	□□□□□ -1.91
USA1	YML029W	URM1	P40554	99 aa	Predicted RBP	3.12	□□□□□ -1.91
USA1	YML029W	SAS2	P40963	338 aa		3.12	□□□□□ -1.91
USA1	YML029W	TAX4	P47030	604 aa		3.12	□□□□□ -1.91
USA1	YML029W	SNN1	P48232	102 aa		3.12	□□□□□ -1.91
USA1	YML029W	COX18	P53239	316 aa		3.12	□□□□□ -1.91
USA1	YML029W	CRH1	P53301	507 aa		3.12	□□□□□ -1.91
USA1	YML029W	FRQ1	Q06389	190 aa		3.12	□□□□□ -1.91
USA1	YML029W	TDA6	Q06466	467 aa		3.12	□□□□□ -1.91
USA1	YML029W	YDL242W	Q07746	117 aa		3.12	□□□□□ -1.91
USA1	YML029W	VTS1	Q08831	523 aa	Known RBP RIP-Chip data	3.12	□□□□□ -1.91	not detected
USA1	YML029W	PRM3	Q08931	133 aa		3.12	□□□□□ -1.91
USA1	YML029W	ATO3	Q12359	275 aa		3.12	□□□□□ -1.91
USA1	YML029W	POM34	Q12445	299 aa		3.12	□□□□□ -1.91
USA1	YML029W	MRPL23	Q12487	163 aa	Predicted RBP	3.12	□□□□□ -1.91
USA1	YML029W	YGR035W-A	Q45U48	73 aa		3.12	□□□□□ -1.91
USA1	YML029W	NOP1	P15646	327 aa	Known RBP	3.11	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 89.1 ms