RNA–Protein interactions for RNA: YDR007W

TRP1, Transcript of Phosphoribosylanthranilate isomerase, yeast

Gene TRP1, Length 675 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRP1	YDR007W	QCR2	P07257	368 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	PHO2	P07269	559 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	RPS25B	P0C0T4	108 aa	Known RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	TIR1	P10863	254 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	BGL2	P15703	313 aa	Known RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	UTR5	P32630	166 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	FMT1	P32785	401 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	YBR096W	P38256	230 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	IGO1	P53897	168 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	DIA1	P54005	336 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	ACT1	P60010	375 aa	Known RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	UTP15	Q04305	513 aa	Known RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	NAT5	Q08689	176 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	UTP23	Q12339	254 aa	Known RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	COX19	Q3E731	98 aa		4.82	□□□□□ -1.64
TRP1	YDR007W	RPS25A	Q3E792	108 aa	Predicted RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	SLH1	P53327	1967 aa	Known RBP	4.82	□□□□□ -1.64
TRP1	YDR007W	SEC4	P07560	215 aa	Known RBP	4.81	□□□□□ -1.64
TRP1	YDR007W	MSF1	P08425	469 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	SPS100	P13130	326 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	MRP49	P32388	137 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	SHE1	P38200	338 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	LSM2	P38203	95 aa	Known RBP	4.81	□□□□□ -1.64
TRP1	YDR007W	LDB7	P38210	180 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	PEX22	P39718	180 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	SNU13	P39990	126 aa	Known RBP	4.81	□□□□□ -1.64
TRP1	YDR007W	CAT5	P41735	233 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	PAU5	P43575	122 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	GPI14	P47088	403 aa	Known RBP	4.81	□□□□□ -1.64
TRP1	YDR007W	YGL262W	P53054	175 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	BOL2	P53082	120 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	YPL077C	Q02831	240 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	TMA23	Q03525	211 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	EMI1	Q04406	187 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	KEI1	Q06346	221 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	YLR030W	Q07967	263 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	CSI2	Q08054	341 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	TIR4	Q12218	487 aa	Predicted RBP	4.81	□□□□□ -1.64
TRP1	YDR007W	FOL3	Q12676	427 aa	Predicted RBP	4.81	□□□□□ -1.64
TRP1	YDR007W	HKR1	P41809	1802 aa		4.81	□□□□□ -1.64
TRP1	YDR007W	RPL16B	P26785	198 aa	Known RBP	4.8	□□□□□ -1.64
TRP1	YDR007W	URA8	P38627	578 aa	Predicted RBP	4.8	□□□□□ -1.64
TRP1	YDR007W	NSA2	P40078	261 aa	Known RBP	4.8	□□□□□ -1.64
TRP1	YDR007W	COX15	P40086	486 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	YER188W	P40103	239 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	FIS1	P40515	155 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	YPI1	P43587	155 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	SDH7	Q04401	133 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	MRX8	Q05473	314 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	LOA1	Q06508	300 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	BSC6	Q08280	497 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	PRR2	Q12310	699 aa		4.8	□□□□□ -1.64
TRP1	YDR007W	TDH2	P00358	332 aa	Known RBP	4.79	□□□□□ -1.64
TRP1	YDR007W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
TRP1	YDR007W	TPI1	P00942	248 aa	Known RBP	4.79	□□□□□ -1.64
TRP1	YDR007W	STE7	P06784	515 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	RPL35A	P0CX84	120 aa	Known RBP	4.79	□□□□□ -1.64
TRP1	YDR007W	RPL35B	P0CX85	120 aa	Known RBP	4.79	□□□□□ -1.64
TRP1	YDR007W	OCH1	P31755	480 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	MRP21	P38175	177 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	DOG1	P38774	246 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	BAT1	P38891	393 aa	Known RBP	4.79	□□□□□ -1.64
TRP1	YDR007W	MIG3	P39943	394 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	PHS1	P40857	217 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	RPA43	P46669	326 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	YJL118W	P47022	219 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	CDH1	P53197	566 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	PAU12	P53343	120 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	HHT1	P61830	136 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	CDC14	Q00684	551 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	YMR166C	Q03829	368 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	THI74	Q04083	370 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	YOR385W	Q08909	290 aa		4.79	□□□□□ -1.64
TRP1	YDR007W	FLO1	P32768	1537 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	YKL187C	P34231	750 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	MCH2	P36032	473 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	YKL071W	P36086	256 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	PAU24	P38155	120 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	WSC4	P38739	605 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	TRR2	P38816	342 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	HSP10	P38910	106 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	TIM17	P39515	158 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	YEA6	P39953	335 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	YNL184C	P53876	108 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	GOT1	Q03554	138 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	HNT1	Q04344	158 aa	Known RBP	4.78	□□□□□ -1.64
TRP1	YDR007W	YPR114W	Q06107	315 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	PRP11	Q07350	266 aa	Predicted RBP	4.78	□□□□□ -1.64
TRP1	YDR007W	YLR036C	Q07986	203 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	PLB3	Q08108	686 aa		4.78	□□□□□ -1.64
TRP1	YDR007W	INO2	P26798	304 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	ALK2	P32789	676 aa	Predicted RBP	4.77	□□□□□ -1.65
TRP1	YDR007W	YKL102C	P34249	101 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	UPS2	P35200	230 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	NIF3	P53081	288 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	PDR17	P53844	350 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	RNH201	P53942	307 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	EST3	Q03096	181 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	LIP2	Q06005	328 aa		4.77	□□□□□ -1.65
TRP1	YDR007W	YLR361C-A	Q3E795	98 aa		4.77	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 62.7 ms