RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 ZCWPW1Q9H0M4 648 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 IKZF4Q9H2S9 585 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 CHRDQ9H2X0 955 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 SLITRK6Q9H5Y7 841 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 DPP3Q9NY33 737 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 SEL1LQ9UBV2 794 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 CCDC39Q9UFE4 941 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 PIAS3Q9Y6X2 628 aa18.52■□□□□ 0.56
CLN3-216ENST00000565316 MORC2Q9Y6X9 1032 aaPredicted RBP18.52■□□□□ 0.56
CLN3-216ENST00000565316 MYMKA6NI61 221 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 TDGF1P13385 188 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 WEE1P30291 646 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 TUFMP49411 452 aaKnown RBP18.51■□□□□ 0.55
CLN3-216ENST00000565316 RESTQ13127 1097 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 POSTNQ15063 836 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 DYMQ7RTS9 669 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 ITIH5Q86UX2 942 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 NT5DC4Q86YG4 428 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 ATRIPQ8WXE1 791 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 FAM3CQ92520 227 aa18.51■□□□□ 0.55
CLN3-216ENST00000565316 FAM126AQ9BYI3 521 aaPredicted RBP18.51■□□□□ 0.55
CLN3-216ENST00000565316 CYB561D2O14569 222 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 CHADO15335 359 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 SOAT2O75908 522 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 IL18RAPO95256 599 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 GAP43P17677 238 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 TAF6P49848 677 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 SMARCB1Q12824 385 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 STXBP5Q5T5C0 1151 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 RRAGBQ5VZM2 374 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 ARID3BQ8IVW6 561 aaPredicted RBP18.5■□□□□ 0.55
CLN3-216ENST00000565316 EFCAB13Q8IY85 973 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 KIAA2013Q8IYS2 634 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 CLIC6Q96NY7 704 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 NDRG2Q9UN36 371 aaKnown RBP18.5■□□□□ 0.55
CLN3-216ENST00000565316 TSC2P49815 1807 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 SCN1AP35498 2009 aa18.5■□□□□ 0.55
CLN3-216ENST00000565316 SYT1P21579 422 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 KCNA1Q09470 495 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 SLC39A12Q504Y0 691 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 L1TD1Q5T7N2 865 aaKnown RBP18.49■□□□□ 0.55
CLN3-216ENST00000565316 SV2BQ7L1I2 683 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 LRRTM3Q86VH5 581 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 METTL23Q86XA0 190 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 DCLK2Q8N568 766 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 C2orf15Q8WU43 125 aaKnown RBP18.49■□□□□ 0.55
CLN3-216ENST00000565316 POMGNT1Q8WZA1 660 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 MSANTD3Q96H12 275 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 LRRC3BQ96PB8 259 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 PYM1Q9BRP8 204 aaKnown RBP18.49■□□□□ 0.55
CLN3-216ENST00000565316 EPC1Q9H2F5 836 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 MRPL44Q9H9J2 332 aaKnown RBP18.49■□□□□ 0.55
CLN3-216ENST00000565316 LMAN1LQ9HAT1 526 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 OBP2AQ9NY56 170 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 ANK1P16157 1881 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 DNAH14Q0VDD8 3507 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 FRMD3A2A2Y4 597 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 CHRNB1P11230 501 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 ATF6P18850 670 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 WSCD1Q658N2 575 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 FAM173BQ6P4H8 233 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 C1orf228Q6PIY5 440 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 TSSK4Q6SA08 328 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 YAF2Q8IY57 180 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 THEM5Q8N1Q8 247 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 RMDN1Q96DB5 314 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 ACCSQ96QU6 501 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 ATXN3LQ9H3M9 355 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 C8orf33Q9H7E9 229 aaPredicted RBP18.49■□□□□ 0.55
CLN3-216ENST00000565316 IL21Q9HBE4 155 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 OLFML3Q9NRN5 406 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 EXOC7Q9UPT5 735 aa18.49■□□□□ 0.55
CLN3-216ENST00000565316 TICRRQ7Z2Z1 1910 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 KPNA7A9QM74 516 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 CCNE1P24864 410 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 GABRR2P28476 465 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 TXLNAP40222 546 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 SV2CQ496J9 727 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 ARHGAP15Q53QZ3 475 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 GPR158Q5T848 1215 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 SPPL2BQ8TCT7 592 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 CSGALNACT1Q8TDX6 532 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 SEPT5Q99719 369 aaPredicted RBP18.48■□□□□ 0.55
CLN3-216ENST00000565316 HINFPQ9BQA5 517 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 LPIN3Q9BQK8 851 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 TASP1Q9H6P5 420 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 PCDHB13Q9Y5F0 798 aa18.48■□□□□ 0.55
CLN3-216ENST00000565316 HAPLN1P10915 354 aaPredicted RBP18.47■□□□□ 0.55
CLN3-216ENST00000565316 GARTP22102 1010 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 PNPLA4P41247 253 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 WNT7BP56706 349 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 ALCAMQ13740 583 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 VEPH1Q14D04 833 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 SLC39A14Q15043 492 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 MGAT5BQ3V5L5 792 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 ARHGAP29Q52LW3 1261 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 CCDC73Q6ZRK6 1079 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 BRSK2Q8IWQ3 736 aa18.47■□□□□ 0.55
CLN3-216ENST00000565316 DCP1BQ8IZD4 617 aaKnown RBP18.47■□□□□ 0.55
CLN3-216ENST00000565316 ZSWIM2Q8NEG5 633 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms