RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-208ENST00000459947 AVENQ9NQS1 362 aaPredicted RBP11.47□□□□□ -0.57
UBR4-208ENST00000459947 MBTPS2O43462 519 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 ASS1P00966 412 aaKnown RBP11.47□□□□□ -0.57
UBR4-208ENST00000459947 RPL10AP62906 217 aaKnown RBP11.47□□□□□ -0.57
UBR4-208ENST00000459947 VEPH1Q14D04 833 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 TDRD10Q5VZ19 366 aaKnown RBP11.47□□□□□ -0.57
UBR4-208ENST00000459947 PTCRAQ6ISU1 281 aaPredicted RBP11.47□□□□□ -0.57
UBR4-208ENST00000459947 SV2AQ7L0J3 742 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 GPR149Q86SP6 731 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 DUSP9Q99956 384 aaKnown RBP11.47□□□□□ -0.57
UBR4-208ENST00000459947 NIF3L1Q9GZT8 377 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 COQ4Q9Y3A0 265 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 PCDHB5Q9Y5E4 795 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.47□□□□□ -0.57
UBR4-208ENST00000459947 TSC2P49815 1807 aa11.47□□□□□ -0.57
UBR4-208ENST00000459947 MYO9BQ13459 2157 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 GRXCR2A6NFK2 248 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 ATF2P15336 505 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 CD44P16070 742 aaKnown RBP11.46□□□□□ -0.57
UBR4-208ENST00000459947 TPM4P67936 248 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 PLCD3Q8N3E9 789 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 RABGGTAQ92696 567 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 SRRTQ9BXP5 876 aaKnown RBP11.46□□□□□ -0.57
UBR4-208ENST00000459947 PRKD2Q9BZL6 878 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 PIDD1Q9HB75 910 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 MTCL1Q9Y4B5 1905 aaKnown RBP11.46□□□□□ -0.57
UBR4-208ENST00000459947 SMTNL1A8MU46 457 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 PRRG1O14668 218 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 TGM5O43548 720 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 TBX10O75333 385 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 GLP2RO95838 553 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 EEF1GP26641 437 aaKnown RBP11.46□□□□□ -0.57
UBR4-208ENST00000459947 SMAD2Q15796 467 aaKnown RBP11.46□□□□□ -0.57
UBR4-208ENST00000459947 LLGL2Q6P1M3 1020 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 PDCL2Q8N4E4 241 aa11.46□□□□□ -0.57
UBR4-208ENST00000459947 VWA8A3KMH1 1905 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 F8W810 466 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 PER2O15055 1255 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 AFPP02771 609 aaKnown RBP11.46□□□□□ -0.58
UBR4-208ENST00000459947 EPCAMP16422 314 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 DCAF17Q5H9S7 520 aaPredicted RBP11.46□□□□□ -0.58
UBR4-208ENST00000459947 INTS6LQ5JSJ4 861 aaKnown RBP11.46□□□□□ -0.58
UBR4-208ENST00000459947 WSCD1Q658N2 575 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 ISM2Q6H9L7 571 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 ERCC4Q92889 916 aaPredicted RBP11.46□□□□□ -0.58
UBR4-208ENST00000459947 MMS19Q96T76 1030 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 CLEC1BQ9P126 229 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 CACNG4Q9UBN1 327 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 CENPFP49454 3210 aa11.46□□□□□ -0.58
UBR4-208ENST00000459947 I3L4J1 428 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 ZNF197O14709 1029 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 GABRDO14764 452 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 PPEF2O14830 753 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 C8AP07357 584 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 BMP6P22004 513 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 MAGEA11P43364 429 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 LMBRD2Q68DH5 695 aaPredicted RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 IQCEQ6IPM2 695 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 ENOSF1Q7L5Y1 443 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 TRIM59Q8IWR1 403 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 SUSD6Q92537 303 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 L1RE1Q9UN81 338 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 USTQ9Y2C2 406 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 GTPBP10A4D1E9 387 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 TRIM49BA6NDI0 452 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 SOBPA7XYQ1 873 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 SPTLC1O15269 473 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 MICAL2O94851 1124 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 CSPG5O95196 566 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 LTBRP36941 435 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 EPHB3P54753 998 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 WNT7BP56706 349 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 MYL6P60660 151 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 WDR72Q3MJ13 1102 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 RARS2Q5T160 578 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 SMG7Q92540 1137 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 ZNF516Q92618 1163 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 JAKMIP2Q96AA8 810 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 BPIFA3Q9BQP9 254 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 SYT15Q9BQS2 421 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 DDX43Q9NXZ2 648 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 BARX2Q9UMQ3 279 aaPredicted RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 PCDHGC5Q9Y5F6 944 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 PTPRJQ12913 1337 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 PRRC2BQ5JSZ5 2229 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 MTIF2P46199 727 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 ALDH1A3P47895 512 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 FMO5P49326 533 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 NOP14P78316 857 aaKnown RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 MAN2A1Q16706 1144 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 OTOP3Q7RTS5 596 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 PALB2Q86YC2 1186 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 PLEKHO2Q8TD55 490 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 SLC35C1Q96A29 364 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 ACSF2Q96CM8 615 aaPredicted RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 NT5C1BQ96P26 610 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 PHF7Q9BWX1 381 aaPredicted RBP11.45□□□□□ -0.58
UBR4-208ENST00000459947 RAB20Q9NX57 234 aa11.45□□□□□ -0.58
UBR4-208ENST00000459947 GCLMP48507 274 aa11.44□□□□□ -0.58
UBR4-208ENST00000459947 SYCE2Q6PIF2 218 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 119.2 ms