RNA–Protein interactions for RNA: YPR110C

RPC40, Transcript of RNA polymerase subunit AC40, yeastyeast

Gene RPC40, Length 1,008 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPC40YPR110C GET4Q12125 312 aa1.93□□□□□ -2.1
RPC40YPR110C RFA3P26755 122 aaKnown RBP1.92□□□□□ -2.1
RPC40YPR110C IDH1P28834 360 aaKnown RBP RIP-Chip data1.92□□□□□ -2.1not detected
RPC40YPR110C MDH3P32419 343 aaKnown RBP RIP-Chip data1.92□□□□□ -2.1not detected
RPC40YPR110C POP4P38336 279 aa1.92□□□□□ -2.1
RPC40YPR110C YHR180WP38868 163 aa1.92□□□□□ -2.1
RPC40YPR110C FCY21P40039 528 aa1.92□□□□□ -2.1
RPC40YPR110C PRM10P42946 383 aa1.92□□□□□ -2.1
RPC40YPR110C DAN1P47178 298 aa1.92□□□□□ -2.1
RPC40YPR110C HOP2P53187 214 aa1.92□□□□□ -2.1
RPC40YPR110C YGR219WP53307 113 aa1.92□□□□□ -2.1
RPC40YPR110C TRM12Q04235 462 aa1.92□□□□□ -2.1
RPC40YPR110C YPR170W-BP0C5R9 85 aa1.91□□□□□ -2.1
RPC40YPR110C ATG22P25568 528 aa1.91□□□□□ -2.1
RPC40YPR110C SEC17P32602 292 aa1.91□□□□□ -2.1
RPC40YPR110C ECM4P36156 370 aa1.91□□□□□ -2.1
RPC40YPR110C YCR087C-AP37263 153 aa1.91□□□□□ -2.1
RPC40YPR110C TVP23P38962 199 aa1.91□□□□□ -2.1
RPC40YPR110C YIL001WP40560 513 aa1.91□□□□□ -2.1
RPC40YPR110C MRPS8Q03799 155 aa1.91□□□□□ -2.1
RPC40YPR110C ABP140Q08641 628 aaKnown RBP1.91□□□□□ -2.1
RPC40YPR110C YDR524C-BQ3E6R4 66 aa1.91□□□□□ -2.1
RPC40YPR110C YCL012CQ8J0M4 134 aa1.91□□□□□ -2.1
RPC40YPR110C YLR422WQ06409 1932 aa1.9□□□□□ -2.11
RPC40YPR110C HTB1P02293 131 aaKnown RBP1.9□□□□□ -2.11
RPC40YPR110C HTB2P02294 131 aa1.9□□□□□ -2.11
RPC40YPR110C CDC7P06243 507 aa1.9□□□□□ -2.11
RPC40YPR110C YLR156WP0CE96 114 aa1.9□□□□□ -2.11
RPC40YPR110C YLR159WP0CE97 114 aa1.9□□□□□ -2.11
RPC40YPR110C YLR161WP0CE98 114 aa1.9□□□□□ -2.11
RPC40YPR110C SCL1P21243 252 aaKnown RBP1.9□□□□□ -2.11
RPC40YPR110C ADE1P27616 306 aa1.9□□□□□ -2.11
RPC40YPR110C PEX4P29340 183 aa1.9□□□□□ -2.11
RPC40YPR110C NRG2P38082 220 aa1.9□□□□□ -2.11
RPC40YPR110C YGR050CP53231 118 aa1.9□□□□□ -2.11
RPC40YPR110C PET191Q02772 108 aa1.9□□□□□ -2.11
RPC40YPR110C DAS2Q12084 232 aa1.9□□□□□ -2.11
RPC40YPR110C ATO3Q12359 275 aa1.9□□□□□ -2.11
RPC40YPR110C TDA8Q6B2U8 126 aa1.9□□□□□ -2.11
RPC40YPR110C CBF1P17106 351 aa1.89□□□□□ -2.11
RPC40YPR110C MEI4P29467 408 aa1.89□□□□□ -2.11
RPC40YPR110C BMT5P40493 336 aa1.89□□□□□ -2.11
RPC40YPR110C YKE4P40544 346 aa1.89□□□□□ -2.11
RPC40YPR110C YJL027CP47063 138 aaPredicted RBP1.89□□□□□ -2.11
RPC40YPR110C YNR062CP53748 327 aa1.89□□□□□ -2.11
RPC40YPR110C MZM1Q03429 123 aaPredicted RBP1.89□□□□□ -2.11
RPC40YPR110C SML1Q04964 104 aa1.89□□□□□ -2.11
RPC40YPR110C MEU1Q07938 337 aaKnown RBP RIP-Chip data1.89□□□□□ -2.11not detected
RPC40YPR110C YRA1Q12159 226 aaKnown RBP1.89□□□□□ -2.11
RPC40YPR110C USB1Q12208 290 aaKnown RBP1.89□□□□□ -2.11
RPC40YPR110C QCR7P00128 127 aa1.88□□□□□ -2.11
RPC40YPR110C FBA1P14540 359 aaKnown RBP1.88□□□□□ -2.11
RPC40YPR110C UTP30P36144 274 aaKnown RBP1.88□□□□□ -2.11
RPC40YPR110C MRPL28P36527 147 aa1.88□□□□□ -2.11
RPC40YPR110C ERV15P38312 142 aa1.88□□□□□ -2.11
RPC40YPR110C TRM5P38793 499 aa1.88□□□□□ -2.11
RPC40YPR110C ICE2P40499 491 aa1.88□□□□□ -2.11
RPC40YPR110C CIS3P47001 227 aa1.88□□□□□ -2.11
RPC40YPR110C GET1P53192 235 aa1.88□□□□□ -2.11
RPC40YPR110C NOP19P53317 196 aaPredicted RBP1.88□□□□□ -2.11
RPC40YPR110C LSM7P53905 115 aaKnown RBP1.88□□□□□ -2.11
RPC40YPR110C COG5P53951 403 aa1.88□□□□□ -2.11
RPC40YPR110C SWP1Q02795 286 aa1.88□□□□□ -2.11
RPC40YPR110C ARO80Q04052 950 aa1.88□□□□□ -2.11
RPC40YPR110C YDR278CQ05612 105 aa1.88□□□□□ -2.11
RPC40YPR110C GRE1Q08969 168 aa1.88□□□□□ -2.11
RPC40YPR110C MCP1Q12106 302 aa1.88□□□□□ -2.11
RPC40YPR110C BEM2P39960 2167 aaKnown RBP1.88□□□□□ -2.11
RPC40YPR110C HAP2P06774 265 aa1.87□□□□□ -2.11
RPC40YPR110C SPS18P32572 300 aa1.87□□□□□ -2.11
RPC40YPR110C KDX1P36005 433 aa1.87□□□□□ -2.11
RPC40YPR110C SVP26P38869 228 aa1.87□□□□□ -2.11
RPC40YPR110C AIF1P52923 378 aa1.87□□□□□ -2.11
RPC40YPR110C GAS3Q03655 524 aa1.87□□□□□ -2.11
RPC40YPR110C YDR249CQ03787 373 aa1.87□□□□□ -2.11
RPC40YPR110C YNG1Q08465 219 aa1.87□□□□□ -2.11
RPC40YPR110C GPM2Q12008 311 aa1.87□□□□□ -2.11
RPC40YPR110C RAS2P01120 322 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C RPL27AP0C2H6 136 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C RPL27BP0C2H7 136 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C KSS1P14681 368 aa1.86□□□□□ -2.11
RPC40YPR110C UBC6P33296 250 aaPredicted RBP1.86□□□□□ -2.11
RPC40YPR110C SKG1P36169 355 aa1.86□□□□□ -2.11
RPC40YPR110C RMD6P39975 231 aa1.86□□□□□ -2.11
RPC40YPR110C AVT2P39981 480 aa1.86□□□□□ -2.11
RPC40YPR110C PGD1P40356 397 aa1.86□□□□□ -2.11
RPC40YPR110C RPL33BP41056 107 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C ERG10P41338 398 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C ERG25P53045 309 aa1.86□□□□□ -2.11
RPC40YPR110C DOC1P53068 250 aa1.86□□□□□ -2.11
RPC40YPR110C YNL247WP53852 767 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C SPG3Q04398 127 aaPredicted RBP1.86□□□□□ -2.11
RPC40YPR110C GIM5Q04493 163 aa1.86□□□□□ -2.11
RPC40YPR110C GGA1Q06336 557 aa1.86□□□□□ -2.11
RPC40YPR110C RIO1Q12196 484 aaKnown RBP1.86□□□□□ -2.11
RPC40YPR110C BOL1Q3E793 110 aa1.86□□□□□ -2.11
RPC40YPR110C CMC2Q3E7A4 109 aa1.86□□□□□ -2.11
RPC40YPR110C RPL25P04456 142 aaKnown RBP1.85□□□□□ -2.11
RPC40YPR110C DDI2P0CH63 225 aa1.85□□□□□ -2.11
RPC40YPR110C DDI3P0CH64 225 aa1.85□□□□□ -2.11
Retrieved 100 of 5,963 RNA–protein pairs in 22.4 ms