RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	ECM33	P38248	429 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	ICS2	P38284	255 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	PCL5	P38794	229 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YHR127W	P38833	243 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	RPB11	P38902	120 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YNL198C	P40166	100 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	PRM5	P40476	318 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	SMK1	P41808	388 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	MID1	P41821	548 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YJR015W	P47090	510 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	MSY1	P48527	492 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YGL230C	P53074	147 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	CDH1	P53197	566 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	SCW4	P53334	386 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	DAD3	P69850	94 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	APS2	Q00381	147 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	SNT309	Q06091	175 aa	Predicted RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	ENB1	Q08299	606 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YPL162C	Q12042	273 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	FCY22	Q12119	530 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YLR050C	Q12155	161 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	YPR071W	Q12346	211 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YLR358C	O13565	187 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	MCK1	P21965	375 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	AHT1	P29589	182 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	AUR1	P36107	401 aa	Predicted RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	DAD2	P36162	133 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	RPP1	P38786	293 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	TEM1	P38987	245 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YND1	P40009	630 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YIL169C	P40442	995 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YIL012W	P40551	113 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	HAC1	P41546	238 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	YFR020W	P43600	232 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	HIT1	P46973	164 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	RPL21A	Q02753	160 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	TRI1	Q05024	226 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	MCT1	Q12283	360 aa		4.23	□□□□□ -1.73
CAF4	YKR036C	RPL21B	Q12672	160 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	DET1	Q99288	334 aa	Known RBP	4.23	□□□□□ -1.73
CAF4	YKR036C	CSF1	Q12150	2958 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	FMP49	A0A023PZB3	126 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	URA5	P13298	226 aa	Known RBP	4.22	□□□□□ -1.73
CAF4	YKR036C	SEC11	P15367	167 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	SAC7	P17121	654 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	ARO4	P32449	370 aa	Known RBP	4.22	□□□□□ -1.73
CAF4	YKR036C	MKK2	P32491	506 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	KKQ8	P36004	724 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	YKL071W	P36086	256 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	VBA2	P38358	474 aa	Known RBP	4.22	□□□□□ -1.73
CAF4	YKR036C	ECM34	P38728	170 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	PCL7	P40186	285 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	YIL067C	P40514	678 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	RPA43	P46669	326 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	SAM37	P50110	327 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	COX18	P53239	316 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	DIC1	Q06143	298 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	ISU2	Q12056	156 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	YDR262W	Q12331	272 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	YCR075W-A	Q3E830	75 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	HFA1	P32874	2273 aa		4.22	□□□□□ -1.73
CAF4	YKR036C	YDR157W	A0A023PZE8	133 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	COX1	P00401	534 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	CBS1	P14066	229 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	MEK1	P24719	497 aa	Predicted RBP	4.21	□□□□□ -1.74
CAF4	YKR036C	YGL010W	P25338	174 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	SSH4	P32343	579 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	SPS18	P32572	300 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	GPP2	P40106	250 aa	Known RBP	4.21	□□□□□ -1.74
CAF4	YKR036C	SNO3	P43544	222 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	PMT3	P47190	753 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	ERG25	P53045	309 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	PDR17	P53844	350 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	ELC1	Q03071	99 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	GIS1	Q03833	894 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	4.21	□□□□□ -1.74	not detected
CAF4	YKR036C	STF1	P01098	86 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	STE7	P06784	515 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	MDH2	P22133	377 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	GAS1	P22146	559 aa	Known RBP	4.21	□□□□□ -1.74
CAF4	YKR036C	YSR3	P23501	404 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	PRE2	P30656	287 aa	Known RBP	4.21	□□□□□ -1.74
CAF4	YKR036C	HMX1	P32339	317 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	RTG1	P32607	177 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	FYV4	P38783	130 aa	Predicted RBP	4.21	□□□□□ -1.74
CAF4	YKR036C	APQ12	P40532	138 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	MSL1	P40567	111 aa	Predicted RBP	4.21	□□□□□ -1.74
CAF4	YKR036C	ERF2	Q06551	359 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	RKI1	Q12189	258 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	ATO3	Q12359	275 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	YCR024C-B	Q3E7Z8	88 aa		4.21	□□□□□ -1.74
CAF4	YKR036C	MDM35	O60200	86 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	SPO13	P23624	291 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	HOG1	P32485	435 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	SOR1	P35497	357 aa	Known RBP	4.2	□□□□□ -1.74
CAF4	YKR036C	NNK1	P36003	928 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	SEC24	P40482	926 aa	Known RBP	4.2	□□□□□ -1.74
CAF4	YKR036C	YJL163C	P46996	555 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	XPT1	P47165	209 aa		4.2	□□□□□ -1.74
CAF4	YKR036C	YLR152C	P54072	576 aa		4.2	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 23.7 ms