RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 BEND6Q5SZJ8 279 aaPredicted RBP24.18■■□□□ 1.46
CDX1-201ENST00000231656 SPOPLQ6IQ16 392 aa24.18■■□□□ 1.46
CDX1-201ENST00000231656 ANKRD33Q7Z3H0 272 aa24.18■■□□□ 1.46
CDX1-201ENST00000231656 DAAM2Q86T65 1068 aa24.18■■□□□ 1.46
CDX1-201ENST00000231656 ACO1P21399 889 aaKnown RBP24.17■■□□□ 1.46
CDX1-201ENST00000231656 BFSP2Q13515 415 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 RHOT2Q8IXI1 618 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 EFCAB13Q8IY85 973 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 PBKQ96KB5 322 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 ASB7Q9H672 318 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 PRDM10Q9NQV6 1147 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 RALGAPA2Q2PPJ7 1873 aa24.17■■□□□ 1.46
CDX1-201ENST00000231656 FAM170AA1A519 330 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 KCNK3O14649 394 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 TLR3O15455 904 aaKnown RBP24.16■■□□□ 1.46
CDX1-201ENST00000231656 ERLIN1O75477 346 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 GPC5P78333 572 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 CUL2Q13617 745 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 C1orf53Q5VUE5 145 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 HES6Q96HZ4 224 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 CALR3Q96L12 384 aaKnown RBP24.16■■□□□ 1.46
CDX1-201ENST00000231656 TMEM106CQ9BVX2 250 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 RBM12Q9NTZ6 932 aaKnown RBP24.16■■□□□ 1.46
CDX1-201ENST00000231656 SASH3O75995 380 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 SELPP16109 830 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 NCOA4Q13772 614 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 PTPROQ16827 1216 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 DUOXA2Q1HG44 320 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 LRRC8DQ7L1W4 858 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 FUT8Q9BYC5 575 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 MTMR12Q9C0I1 747 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 IPPQ9Y573 584 aa24.16■■□□□ 1.46
CDX1-201ENST00000231656 MCM3P25205 808 aa24.15■■□□□ 1.46
CDX1-201ENST00000231656 TFAMQ00059 246 aaKnown RBP24.15■■□□□ 1.46
CDX1-201ENST00000231656 TRIM60Q495X7 471 aa24.15■■□□□ 1.46
CDX1-201ENST00000231656 JADE1Q6IE81 842 aa24.15■■□□□ 1.46
CDX1-201ENST00000231656 SMG8Q8ND04 991 aaKnown RBP24.15■■□□□ 1.46
CDX1-201ENST00000231656 PAWRQ96IZ0 340 aaKnown RBP24.15■■□□□ 1.46
CDX1-201ENST00000231656 TOX2Q96NM4 488 aa24.15■■□□□ 1.46
CDX1-201ENST00000231656 MCOLN1Q9GZU1 580 aa24.15■■□□□ 1.46
CDX1-201ENST00000231656 AMFRQ9UKV5 643 aa24.15■■□□□ 1.46
CDX1-201ENST00000231656 DCDC2CA8MYV0 355 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 PITPNM1O00562 1244 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 RECQL4O94761 1208 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 MTA2O94776 668 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 NFICP08651 508 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 YARSP54577 528 aaKnown RBP24.14■■□□□ 1.46
CDX1-201ENST00000231656 SCARA3Q6AZY7 606 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 LRRC1Q9BTT6 524 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 APOL6Q9BWW8 343 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 RNF39Q9H2S5 420 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 PLEKHA5Q9HAU0 1116 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 FAM105AQ9NUU6 356 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 NUB1Q9Y5A7 615 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 PCDHB2Q9Y5E7 798 aa24.14■■□□□ 1.46
CDX1-201ENST00000231656 PHACTR2O75167 634 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 CALCAP01258 141 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 TMEM191BP0C7N4 346 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 AKAP5P24588 427 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 NOP14P78316 857 aaKnown RBP24.14■■□□□ 1.45
CDX1-201ENST00000231656 TLE2Q04725 743 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 FAAP100Q0VG06 881 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 CLEC16AQ2KHT3 1053 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 CCDC70Q6NSX1 233 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 ZNF677Q86XU0 584 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 CD302Q8IX05 232 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 ACTRT1Q8TDG2 376 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 ANKRD36BP1Q96IX9 119 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 SNX27Q96L92 541 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 CNTN6Q9UQ52 1028 aa24.14■■□□□ 1.45
CDX1-201ENST00000231656 UMODL1Q5DID0 1318 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 MGEA5O60502 916 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 TBXAS1P24557 533 aaPredicted RBP24.13■■□□□ 1.45
CDX1-201ENST00000231656 BPIFB4P59827 614 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 DSC3Q14574 896 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 ACAD10Q6JQN1 1059 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 C11orf63Q6NUN7 778 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 RUBCNQ92622 972 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 CXCL16Q9H2A7 254 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 C11orf49Q9H6J7 331 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 CTTNBP2NLQ9P2B4 639 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 TMEM59LQ9UK28 342 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 L1RE1Q9UN81 338 aa24.13■■□□□ 1.45
CDX1-201ENST00000231656 PDCD11Q14690 1871 aaKnown RBP24.12■■□□□ 1.45
CDX1-201ENST00000231656 ASS1P00966 412 aaKnown RBP24.12■■□□□ 1.45
CDX1-201ENST00000231656 TNNC2P02585 160 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 CYP1A2P05177 515 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 CBX1P83916 185 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 ALKAL1Q6UXT8 129 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 SELENOOQ9BVL4 669 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 TRAIPQ9BWF2 469 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 C2CD2Q9Y426 696 aa24.12■■□□□ 1.45
CDX1-201ENST00000231656 DDX3YO15523 660 aaKnown RBP24.11■■□□□ 1.45
CDX1-201ENST00000231656 CST3P01034 146 aaPredicted RBP24.11■■□□□ 1.45
CDX1-201ENST00000231656 CAPN2P17655 700 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 PLA2G4AP47712 749 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 TMEM132DQ14C87 1099 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 NT5DC4Q86YG4 428 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 KRT222Q8N1A0 295 aa24.11■■□□□ 1.45
CDX1-201ENST00000231656 RASGEF1CQ8N431 466 aa24.11■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 94 ms