RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C Q0255P03881 472 aa4.73□□□□□ -1.65
DEF1YKL054C RPL30P14120 105 aaKnown RBP4.73□□□□□ -1.65
DEF1YKL054C LHP1P33399 275 aaKnown RBP4.73□□□□□ -1.65
DEF1YKL054C YBL081WP38180 368 aaKnown RBP4.73□□□□□ -1.65
DEF1YKL054C SYS1P41544 203 aa4.73□□□□□ -1.65
DEF1YKL054C TTI2P47168 421 aa4.73□□□□□ -1.65
DEF1YKL054C YLR281CQ05863 155 aa4.73□□□□□ -1.65
DEF1YKL054C TSC3Q3E790 80 aa4.73□□□□□ -1.65
DEF1YKL054C SNT2P53127 1403 aa4.72□□□□□ -1.65
DEF1YKL054C OPY1P38271 328 aa4.72□□□□□ -1.65
DEF1YKL054C COF1Q03048 143 aaKnown RBP4.72□□□□□ -1.65
DEF1YKL054C SLO1Q3E784 85 aa4.72□□□□□ -1.65
DEF1YKL054C RSA4P25382 515 aaKnown RBP4.72□□□□□ -1.65
DEF1YKL054C ZRT3P34240 503 aa4.72□□□□□ -1.65
DEF1YKL054C GGC1P38988 300 aa4.72□□□□□ -1.65
DEF1YKL054C DLS1P40366 167 aa4.72□□□□□ -1.65
DEF1YKL054C REE1P40893 198 aa4.72□□□□□ -1.65
DEF1YKL054C RPL21AQ02753 160 aaKnown RBP4.72□□□□□ -1.65
DEF1YKL054C API2Q04413 109 aa4.72□□□□□ -1.65
DEF1YKL054C SMT3Q12306 101 aaKnown RBP4.72□□□□□ -1.65
DEF1YKL054C YPL247CQ12523 523 aa4.72□□□□□ -1.65
DEF1YKL054C MRP49P32388 137 aa4.71□□□□□ -1.66
DEF1YKL054C YPL073CP40323 161 aa4.71□□□□□ -1.66
DEF1YKL054C BUD13P46947 266 aaPredicted RBP4.71□□□□□ -1.66
DEF1YKL054C YDR278CQ05612 105 aa4.71□□□□□ -1.66
DEF1YKL054C LDB18Q07887 179 aa4.71□□□□□ -1.66
DEF1YKL054C ATP14Q12349 124 aa4.71□□□□□ -1.66
DEF1YKL054C YCR101CP25607 182 aa4.7□□□□□ -1.66
DEF1YKL054C RPB9P27999 122 aa4.7□□□□□ -1.66
DEF1YKL054C TDA4P47153 279 aa4.7□□□□□ -1.66
DEF1YKL054C UFD1P53044 361 aa4.7□□□□□ -1.66
DEF1YKL054C HHT1P61830 136 aa4.7□□□□□ -1.66
DEF1YKL054C NKP2Q06162 153 aa4.7□□□□□ -1.66
DEF1YKL054C TAD3Q9URQ3 322 aa4.7□□□□□ -1.66
DEF1YKL054C RPB3P16370 318 aaKnown RBP4.7□□□□□ -1.66
DEF1YKL054C RFS1P38234 210 aaKnown RBP4.7□□□□□ -1.66
DEF1YKL054C PGD1P40356 397 aa4.7□□□□□ -1.66
DEF1YKL054C YDR115WQ04598 105 aa4.7□□□□□ -1.66
DEF1YKL054C DGK1Q12382 290 aa4.7□□□□□ -1.66
DEF1YKL054C DFM1Q12743 341 aaKnown RBP4.7□□□□□ -1.66
DEF1YKL054C SNM1P40993 198 aa4.69□□□□□ -1.66
DEF1YKL054C ERJ5P43613 295 aaPredicted RBP4.69□□□□□ -1.66
DEF1YKL054C YFR054CP43622 192 aa4.69□□□□□ -1.66
DEF1YKL054C FIP1P45976 327 aa4.69□□□□□ -1.66
DEF1YKL054C SLM2P53955 656 aa4.69□□□□□ -1.66
DEF1YKL054C YPL225WQ08971 146 aaKnown RBP4.69□□□□□ -1.66
DEF1YKL054C MCP1Q12106 302 aa4.69□□□□□ -1.66
DEF1YKL054C YBR063CP38083 404 aa4.69□□□□□ -1.66
DEF1YKL054C YNL200CP40165 246 aaKnown RBP4.69□□□□□ -1.66
DEF1YKL054C OSH6Q02201 448 aa4.69□□□□□ -1.66
DEF1YKL054C DIG2Q03373 323 aaKnown RBP4.69□□□□□ -1.66
DEF1YKL054C SDH7Q04401 133 aa4.69□□□□□ -1.66
DEF1YKL054C TEM1P38987 245 aa4.68□□□□□ -1.66
DEF1YKL054C PBA1Q05778 276 aa4.68□□□□□ -1.66
DEF1YKL054C YOR289WQ12012 251 aaPredicted RBP4.68□□□□□ -1.66
DEF1YKL054C YOR020W-AQ3E824 90 aa4.68□□□□□ -1.66
DEF1YKL054C ASK1P35734 292 aa4.68□□□□□ -1.66
DEF1YKL054C RPS20P38701 121 aaKnown RBP4.68□□□□□ -1.66
DEF1YKL054C PGU1P47180 361 aa4.68□□□□□ -1.66
DEF1YKL054C CNL1Q06333 122 aa4.68□□□□□ -1.66
DEF1YKL054C YLR099W-AQ3E798 87 aa4.68□□□□□ -1.66
DEF1YKL054C YPR014CQ6B0W2 109 aa4.68□□□□□ -1.66
DEF1YKL054C ADK1P07170 222 aaKnown RBP4.67□□□□□ -1.66
DEF1YKL054C TOM40P23644 387 aaKnown RBP4.67□□□□□ -1.66
DEF1YKL054C RPC19P28000 142 aaKnown RBP4.67□□□□□ -1.66
DEF1YKL054C OM14P38325 134 aa4.67□□□□□ -1.66
DEF1YKL054C OST2P46964 130 aa4.67□□□□□ -1.66
DEF1YKL054C YGR219WP53307 113 aa4.67□□□□□ -1.66
DEF1YKL054C PRP11Q07350 266 aaPredicted RBP4.67□□□□□ -1.66
DEF1YKL054C HYM1P32464 399 aa4.66□□□□□ -1.66
DEF1YKL054C VMA7P39111 118 aa4.66□□□□□ -1.66
DEF1YKL054C MIG3P39943 394 aa4.66□□□□□ -1.66
DEF1YKL054C IRC25Q07951 179 aa4.66□□□□□ -1.66
DEF1YKL054C AKR2Q12013 749 aa4.66□□□□□ -1.66
DEF1YKL054C REP2P03872 296 aa4.66□□□□□ -1.66
DEF1YKL054C YPR170W-BP0C5R9 85 aa4.66□□□□□ -1.66
DEF1YKL054C SHE2P36068 246 aaKnown RBP RIP-Chip data4.66□□□□□ -1.66not detected
DEF1YKL054C POP4P38336 279 aa4.66□□□□□ -1.66
DEF1YKL054C PTH1P38876 190 aaKnown RBP4.66□□□□□ -1.66
DEF1YKL054C RPE1P46969 238 aa4.66□□□□□ -1.66
DEF1YKL054C XPT1P47165 209 aa4.66□□□□□ -1.66
DEF1YKL054C APJ1P53940 528 aa4.66□□□□□ -1.66
DEF1YKL054C ATO3Q12359 275 aa4.66□□□□□ -1.66
DEF1YKL054C YOL085CQ99345 113 aa4.66□□□□□ -1.66
DEF1YKL054C NMT1P14743 455 aa4.65□□□□□ -1.66
DEF1YKL054C ATP15P21306 62 aa4.65□□□□□ -1.66
DEF1YKL054C TFC1P32367 649 aa4.65□□□□□ -1.66
DEF1YKL054C GSP1P32835 219 aaKnown RBP4.65□□□□□ -1.66
DEF1YKL054C GSP2P32836 220 aaKnown RBP4.65□□□□□ -1.66
DEF1YKL054C PAN3P36102 679 aaPredicted RBP4.65□□□□□ -1.66
DEF1YKL054C MIC19P43594 170 aa4.65□□□□□ -1.66
DEF1YKL054C BOR1P53838 576 aa4.65□□□□□ -1.66
DEF1YKL054C TVP15Q03860 143 aa4.65□□□□□ -1.66
DEF1YKL054C NAT3Q06504 195 aa4.65□□□□□ -1.66
DEF1YKL054C SRL1Q08673 210 aa4.65□□□□□ -1.66
DEF1YKL054C YLR156WP0CE96 114 aa4.65□□□□□ -1.67
DEF1YKL054C YLR159WP0CE97 114 aa4.65□□□□□ -1.67
DEF1YKL054C YLR161WP0CE98 114 aa4.65□□□□□ -1.67
DEF1YKL054C YPT53P36019 220 aa4.65□□□□□ -1.67
DEF1YKL054C ASP1P38986 381 aaPredicted RBP4.65□□□□□ -1.67
Retrieved 100 of 5,963 RNA–protein pairs in 47.7 ms