RNA–Protein interactions for RNA: YFL005W

SEC4, Transcript of Rab family GTPase, yeastyeast

Gene SEC4, Length 648 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum, Nucleus, Peroxisome .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SEC4YFL005W AST2P39945 430 aaKnown RBP1.9□□□□□ -2.11
SEC4YFL005W COG5P53951 403 aa1.9□□□□□ -2.11
SEC4YFL005W YPL162CQ12042 273 aa1.9□□□□□ -2.11
SEC4YFL005W MDM32Q12171 622 aa1.9□□□□□ -2.11
SEC4YFL005W YCL012CQ8J0M4 134 aa1.9□□□□□ -2.11
SEC4YFL005W YHR214C-EQ8TGK0 99 aa1.9□□□□□ -2.11
SEC4YFL005W TIM9O74700 87 aa1.89□□□□□ -2.11
SEC4YFL005W MAG1P22134 296 aaKnown RBP1.89□□□□□ -2.11
SEC4YFL005W PTM1P32857 523 aa1.89□□□□□ -2.11
SEC4YFL005W KDX1P36005 433 aa1.89□□□□□ -2.11
SEC4YFL005W FES1P38260 290 aa1.89□□□□□ -2.11
SEC4YFL005W POP7P38291 140 aa1.89□□□□□ -2.11
SEC4YFL005W UMP1P38293 148 aa1.89□□□□□ -2.11
SEC4YFL005W DSE2P38844 325 aa1.89□□□□□ -2.11
SEC4YFL005W PEP8P40335 379 aa1.89□□□□□ -2.11
SEC4YFL005W TMA22P47089 198 aaPredicted RBP1.89□□□□□ -2.11
SEC4YFL005W DOC1P53068 250 aa1.89□□□□□ -2.11
SEC4YFL005W YDR249CQ03787 373 aa1.89□□□□□ -2.11
SEC4YFL005W URA5P13298 226 aaKnown RBP1.88□□□□□ -2.11
SEC4YFL005W MDH2P22133 377 aa1.88□□□□□ -2.11
SEC4YFL005W BET1P22804 142 aa1.88□□□□□ -2.11
SEC4YFL005W TRR1P29509 319 aaKnown RBP1.88□□□□□ -2.11
SEC4YFL005W SNC2P33328 115 aa1.88□□□□□ -2.11
SEC4YFL005W YET1P35723 206 aa1.88□□□□□ -2.11
SEC4YFL005W SRP102P36057 244 aaPredicted RBP1.88□□□□□ -2.11
SEC4YFL005W SRP14P38985 146 aa1.88□□□□□ -2.11
SEC4YFL005W VTC1P40046 129 aaRIP-Chip data1.88□□□□□ -2.11not detected
SEC4YFL005W POG1P40473 351 aa1.88□□□□□ -2.11
SEC4YFL005W AGE2P40529 298 aa1.88□□□□□ -2.11
SEC4YFL005W NOP19P53317 196 aaPredicted RBP1.88□□□□□ -2.11
SEC4YFL005W YNG1Q08465 219 aa1.88□□□□□ -2.11
SEC4YFL005W QCR7P00128 127 aa1.87□□□□□ -2.11
SEC4YFL005W RPL35AP0CX84 120 aaKnown RBP1.87□□□□□ -2.11
SEC4YFL005W RPL35BP0CX85 120 aaKnown RBP1.87□□□□□ -2.11
SEC4YFL005W RPB3P16370 318 aaKnown RBP1.87□□□□□ -2.11
SEC4YFL005W APA2P22108 325 aa1.87□□□□□ -2.11
SEC4YFL005W ADE1P27616 306 aa1.87□□□□□ -2.11
SEC4YFL005W AME1P38313 324 aa1.87□□□□□ -2.11
SEC4YFL005W HMF1P40037 129 aaKnown RBP1.87□□□□□ -2.11
SEC4YFL005W GVP36P40531 326 aaKnown RBP1.87□□□□□ -2.11
SEC4YFL005W BOL2P53082 120 aa1.87□□□□□ -2.11
SEC4YFL005W YFR032C-BQ8TGU2 87 aa1.87□□□□□ -2.11
SEC4YFL005W YIL177CP40434 1758 aa1.86□□□□□ -2.11
SEC4YFL005W YJL225CP40889 1758 aa1.86□□□□□ -2.11
SEC4YFL005W UBC6P33296 250 aaPredicted RBP1.86□□□□□ -2.11
SEC4YFL005W FIG1P38224 298 aa1.86□□□□□ -2.11
SEC4YFL005W YNL217WP40152 326 aa1.86□□□□□ -2.11
SEC4YFL005W ERG10P41338 398 aaKnown RBP1.86□□□□□ -2.11
SEC4YFL005W AIM25P47140 327 aa1.86□□□□□ -2.11
SEC4YFL005W BAT2P47176 376 aaKnown RBP1.86□□□□□ -2.11
SEC4YFL005W MMS2P53152 137 aa1.86□□□□□ -2.11
SEC4YFL005W RTC4P53850 401 aa1.86□□□□□ -2.11
SEC4YFL005W BUD25P85052 153 aa1.86□□□□□ -2.11
SEC4YFL005W SPC2Q04969 178 aa1.86□□□□□ -2.11
SEC4YFL005W BRX1Q08235 291 aaKnown RBP1.86□□□□□ -2.11
SEC4YFL005W YOL160WQ08321 113 aa1.86□□□□□ -2.11
SEC4YFL005W YAP3P38749 330 aa1.85□□□□□ -2.11
SEC4YFL005W GIM4P40005 111 aaKnown RBP1.85□□□□□ -2.11
SEC4YFL005W SOK1P40317 901 aa1.85□□□□□ -2.11
SEC4YFL005W LSM1P47017 172 aaKnown RBP1.85□□□□□ -2.11
SEC4YFL005W PLP1Q04004 230 aa1.85□□□□□ -2.11
SEC4YFL005W SML1Q04964 104 aa1.85□□□□□ -2.11
SEC4YFL005W GGA1Q06336 557 aa1.85□□□□□ -2.11
SEC4YFL005W YLR036CQ07986 203 aa1.85□□□□□ -2.11
SEC4YFL005W FSF1Q12029 327 aaKnown RBP1.85□□□□□ -2.11
SEC4YFL005W BEM2P39960 2167 aaKnown RBP1.85□□□□□ -2.11
SEC4YFL005W CKS1P20486 150 aaKnown RBP1.84□□□□□ -2.11
SEC4YFL005W ATP15P21306 62 aa1.84□□□□□ -2.11
SEC4YFL005W MGT1P26188 188 aa1.84□□□□□ -2.11
SEC4YFL005W ACP1P32463 125 aa1.84□□□□□ -2.11
SEC4YFL005W MAK5P38112 773 aaPredicted RBP1.84□□□□□ -2.11
SEC4YFL005W AVT2P39981 480 aa1.84□□□□□ -2.11
SEC4YFL005W MAK3Q03503 176 aa1.84□□□□□ -2.11
SEC4YFL005W YDL085C-AQ3E7B7 68 aaKnown RBP1.84□□□□□ -2.11
SEC4YFL005W SIR2P06700 562 aa1.83□□□□□ -2.12
SEC4YFL005W MRS1P07266 363 aa1.83□□□□□ -2.12
SEC4YFL005W RPS28BP0C0X0 67 aaKnown RBP1.83□□□□□ -2.12
SEC4YFL005W CNB1P25296 175 aa1.83□□□□□ -2.12
SEC4YFL005W FZF1P32805 299 aa1.83□□□□□ -2.12
SEC4YFL005W YBR285WP38354 144 aa1.83□□□□□ -2.12
SEC4YFL005W LSM4P40070 187 aaKnown RBP1.83□□□□□ -2.12
SEC4YFL005W EAF6P47128 113 aa1.83□□□□□ -2.12
SEC4YFL005W SBH2P52871 88 aa1.83□□□□□ -2.12
SEC4YFL005W YIP3P53633 176 aa1.83□□□□□ -2.12
SEC4YFL005W YNR077CP53758 84 aa1.83□□□□□ -2.12
SEC4YFL005W YLR460CP54007 376 aa1.83□□□□□ -2.12
SEC4YFL005W YDR274CP87283 123 aa1.83□□□□□ -2.12
SEC4YFL005W RPS28AQ3E7X9 67 aaPredicted RBP1.83□□□□□ -2.12
SEC4YFL005W TAF2P23255 1407 aa1.83□□□□□ -2.12
SEC4YFL005W GCY1P14065 312 aaKnown RBP RIP-Chip data1.82□□□□□ -2.12not detected
SEC4YFL005W SHE2P36068 246 aaKnown RBP RIP-Chip data1.82□□□□□ -2.12not detected
SEC4YFL005W GAA1P39012 614 aa1.82□□□□□ -2.12
SEC4YFL005W PDS1P40316 373 aaPredicted RBP1.82□□□□□ -2.12
SEC4YFL005W YFR054CP43622 192 aa1.82□□□□□ -2.12
SEC4YFL005W JAC1P53193 184 aa1.82□□□□□ -2.12
SEC4YFL005W YNL140CP53910 189 aa1.82□□□□□ -2.12
SEC4YFL005W NRK1P53915 240 aa1.82□□□□□ -2.12
SEC4YFL005W YDR476CQ03362 224 aa1.82□□□□□ -2.12
SEC4YFL005W HNT1Q04344 158 aaKnown RBP1.82□□□□□ -2.12
SEC4YFL005W YLR053CQ12026 108 aa1.82□□□□□ -2.12
Retrieved 100 of 5,963 RNA–protein pairs in 29 ms