RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 SOD2P04179 222 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 DLATP10515 647 aaKnown RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 KRT13P13646 458 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 PLCB2Q00722 1185 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 PSMD6Q15008 389 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 TIGD5Q53EQ6 642 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 FAM171A1Q5VUB5 890 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 KIAA0319Q5VV43 1072 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 C9orf57Q5W0N0 161 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 SARM1Q6SZW1 724 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 C1orf127Q8N9H9 656 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 CXorf38Q8TB03 319 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 TSPAN18Q96SJ8 248 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 MTMR12Q9C0I1 747 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 INTS13Q9NVM9 706 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 TAB2Q9NYJ8 693 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 CARNS1A5YM72 827 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 C2orf71A6NGG8 1288 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 SPTLC1O15269 473 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 XPOTO43592 962 aaKnown RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 LILRB3O75022 631 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 CTSAP10619 480 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 PRKCSHP14314 528 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 CA8P35219 290 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 VAMP7P51809 220 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 COPB1P53618 953 aaKnown RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 BFSP1Q12934 665 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 MAN2A1Q16706 1144 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 MIIPQ5JXC2 388 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 RTP2Q5QGT7 225 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 C1orf220Q5T0J3 134 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 CEP57Q86XR8 500 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 MRPL43Q8N983 215 aaKnown RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 MAFAQ8NHW3 353 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 TMC2Q8TDI7 906 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 PARD3BQ8TEW8 1205 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 NAP1L5Q96NT1 182 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 VPS16Q9H269 839 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 NSUN3Q9H649 340 aaKnown RBP16.17■□□□□ 0.18
TRIM28-207ENST00000597136 IGFLR1Q9H665 355 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 CHST7Q9NS84 486 aa16.17■□□□□ 0.18
TRIM28-207ENST00000597136 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.17■□□□□ 0.181e-7■□□□□ 10.5
TRIM28-207ENST00000597136 LRRIQ3A6PVS8 624 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-207ENST00000597136 CST3P01034 146 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-207ENST00000597136 ITGB3P05106 788 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 TNNI1P19237 187 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 UBASH3AP57075 661 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 LILRA4P59901 499 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 RBM10P98175 930 aaKnown RBP16.16■□□□□ 0.18
TRIM28-207ENST00000597136 ENPEPQ07075 957 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 HYAL1Q12794 435 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 PRSS55Q6UWB4 352 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-207ENST00000597136 NT5DC4Q86YG4 428 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 CACTINQ8WUQ7 758 aaKnown RBP16.16■□□□□ 0.18
TRIM28-207ENST00000597136 SLC35C1Q96A29 364 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 HERC2P3Q9BVR0 1158 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 PRDM6Q9NQX0 595 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 IFNKQ9P0W0 207 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 SIX4Q9UIU6 781 aa16.16■□□□□ 0.18
TRIM28-207ENST00000597136 MYO10Q9HD67 2058 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 A0A1B0GTH6 734 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 TPM2P07951 284 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 TRIM49P0CI25 452 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 TRIM49CP0CI26 452 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 RPL17P18621 184 aaKnown RBP16.15■□□□□ 0.18
TRIM28-207ENST00000597136 TKTP29401 623 aaKnown RBP16.15■□□□□ 0.18
TRIM28-207ENST00000597136 POLR2BP30876 1174 aaKnown RBP16.15■□□□□ 0.18
TRIM28-207ENST00000597136 NRIP1P48552 1158 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 SMC1AQ14683 1233 aaKnown RBP16.15■□□□□ 0.18
TRIM28-207ENST00000597136 SURF1Q15526 300 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 PTPN14Q15678 1187 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 DUOXA2Q1HG44 320 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 USP41Q3LFD5 358 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 VWA3BQ502W6 1294 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 DCAF17Q5H9S7 520 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-207ENST00000597136 TCERG1LQ5VWI1 586 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 FNBP1Q96RU3 617 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 CGRRF1Q99675 332 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 NDST4Q9H3R1 872 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 NGRNQ9NPE2 291 aaKnown RBP16.15■□□□□ 0.18
TRIM28-207ENST00000597136 AGAP1Q9UPQ3 857 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 NUB1Q9Y5A7 615 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 A0A0C4DFX4 3053 aa16.15■□□□□ 0.18
TRIM28-207ENST00000597136 SF3B1O75533 1304 aaKnown RBP eCLIP16.15■□□□□ 0.182e-6■■■■■ 66.5
TRIM28-207ENST00000597136 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-207ENST00000597136 LINC01565O15544 149 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 TMEM191BP0C7N4 346 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 FGFR3P22607 806 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 GLUD2P49448 558 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 CLDN10P78369 228 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 DSG1Q02413 1049 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 KCNH2Q12809 1159 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 NR1I3Q14994 352 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 FILIP1LQ4L180 1135 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 TRAPPC11Q7Z392 1133 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 USP37Q86T82 979 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 WDR49Q8IV35 697 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 GLYCTKQ8IVS8 523 aa16.14■□□□□ 0.17
TRIM28-207ENST00000597136 RIN2Q8WYP3 895 aaPredicted RBP16.14■□□□□ 0.17
TRIM28-207ENST00000597136 ELMO3Q96BJ8 720 aa16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms