RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 PCDHGC5Q9Y5F6 944 aa23.35■■□□□ 1.33
SNX1-206ENST00000559389 CHD7Q9P2D1 2997 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 SYN3O14994 580 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 STAU1O95793 577 aaKnown RBP23.34■■□□□ 1.33
SNX1-206ENST00000559389 CST3P01034 146 aaPredicted RBP23.34■■□□□ 1.33
SNX1-206ENST00000559389 TKTP29401 623 aaKnown RBP23.34■■□□□ 1.33
SNX1-206ENST00000559389 PIK3CAP42336 1068 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 ZNF165P49910 485 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 DSG1Q02413 1049 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 TRPC3Q13507 836 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 NCOA4Q13772 614 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 SMC1AQ14683 1233 aaKnown RBP23.34■■□□□ 1.33
SNX1-206ENST00000559389 PTPN14Q15678 1187 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 USP41Q3LFD5 358 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 CBWD6Q4V339 395 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 CBWD3Q5JTY5 395 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 RTP2Q5QGT7 225 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 CBWD5Q5RIA9 395 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 PLPP4Q5VZY2 271 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 KRT39Q6A163 491 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 TMC7Q7Z402 723 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 GPR65Q8IYL9 337 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 HPDLQ96IR7 371 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 TTPALQ9BTX7 342 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 XYLT2Q9H1B5 865 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 NGRNQ9NPE2 291 aaKnown RBP23.34■■□□□ 1.33
SNX1-206ENST00000559389 PCDHB8Q9UN66 801 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 R3HCC1Q9Y3T6 440 aaKnown RBP23.34■■□□□ 1.33
SNX1-206ENST00000559389 MTCH2Q9Y6C9 303 aa23.34■■□□□ 1.33
SNX1-206ENST00000559389 KPNA7A9QM74 516 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 ATICP31939 592 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 MYL6P60660 151 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 MYO1EQ12965 1108 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 DSTYKQ6XUX3 929 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 TAS1R2Q8TE23 839 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 PIK3R5Q8WYR1 880 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 VRTNQ9H8Y1 702 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 MAGEC2Q9UBF1 373 aaPredicted RBP23.33■■□□□ 1.33
SNX1-206ENST00000559389 UTP18Q9Y5J1 556 aaKnown RBP eCLIP23.33■■□□□ 1.33
SNX1-206ENST00000559389 IRAK3Q9Y616 596 aa23.33■■□□□ 1.33
SNX1-206ENST00000559389 KCNJ18B7U540 433 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 HLA-DRAP01903 254 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 ODC1P11926 461 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 FMO5P49326 533 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 KCNJ12Q14500 433 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 BMS1Q14692 1282 aaKnown RBP23.32■■□□□ 1.32
SNX1-206ENST00000559389 HSP90AA4PQ58FG1 418 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 KIAA0319Q5VV43 1072 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 KIAA1841Q6NSI8 718 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 DHX40Q8IX18 779 aaKnown RBP23.32■■□□□ 1.32
SNX1-206ENST00000559389 AUTS2Q8WXX7 1259 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 SENP8Q96LD8 212 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 MRPL17Q9NRX2 175 aaKnown RBP23.32■■□□□ 1.32
SNX1-206ENST00000559389 FANCLQ9NW38 375 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 GDAP2Q9NXN4 497 aa23.32■■□□□ 1.32
SNX1-206ENST00000559389 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 ARHGEF37A1IGU5 675 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 C2orf71A6NGG8 1288 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 LILRB3O75022 631 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 N4BP1O75113 896 aaKnown RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 CAVIN2O95810 425 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 IGFBP4P22692 258 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 EEF1GP26641 437 aaKnown RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 MTIF2P46199 727 aaKnown RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 MYL7Q01449 175 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 ZNF699Q32M78 642 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 CEP57Q86XR8 500 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 MRPL43Q8N983 215 aaKnown RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 MICAL1Q8TDZ2 1067 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 RIN2Q8WYP3 895 aaPredicted RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 HSD3B7Q9H2F3 369 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 NSUN3Q9H649 340 aaKnown RBP23.31■■□□□ 1.32
SNX1-206ENST00000559389 SSX2IPQ9Y2D8 614 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 COQ4Q9Y3A0 265 aa23.31■■□□□ 1.32
SNX1-206ENST00000559389 HIDE1A8MVS5 230 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 C2CD2LO14523 706 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 PMM2O15305 246 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 ASS1P00966 412 aaKnown RBP23.3■■□□□ 1.32
SNX1-206ENST00000559389 AFPP02771 609 aaKnown RBP23.3■■□□□ 1.32
SNX1-206ENST00000559389 CYP11A1P05108 521 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 FOSL2P15408 326 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 ZNF18P17022 549 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 TYMPP19971 482 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 ZNF445P59923 1031 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 KCNH2Q12809 1159 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 IQCB1Q15051 598 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 MAN2A1Q16706 1144 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 TCP11X2Q5H9J9 407 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 VARS2Q5ST30 1063 aaKnown RBP23.3■■□□□ 1.32
SNX1-206ENST00000559389 PDXDC1Q6P996 788 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 PRSS55Q6UWB4 352 aaPredicted RBP23.3■■□□□ 1.32
SNX1-206ENST00000559389 LRSAM1Q6UWE0 723 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 ADGRD2Q7Z7M1 963 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 FBXL13Q8NEE6 735 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 APPL2Q8NEU8 664 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 TAF4BQ92750 862 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 SNX9Q9Y5X1 595 aa23.3■■□□□ 1.32
SNX1-206ENST00000559389 SMTNL1A8MU46 457 aa23.29■■□□□ 1.32
SNX1-206ENST00000559389 CYB561D2O14569 222 aa23.29■■□□□ 1.32
SNX1-206ENST00000559389 P4HA2O15460 535 aa23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms