RNA–Protein interactions for RNA: YML097C

VPS9, Transcript of Guanine nucleotide exchange factor (GEF), yeast

Gene VPS9, Length 1,356 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS9	YML097C	UBP2	Q01476	1272 aa		4.99	□□□□□ -1.61
VPS9	YML097C	SEC20	P28791	383 aa		4.98	□□□□□ -1.61
VPS9	YML097C	GUT2	P32191	649 aa		4.98	□□□□□ -1.61
VPS9	YML097C	ATG3	P40344	310 aa		4.98	□□□□□ -1.61
VPS9	YML097C	THI12	P42883	340 aa		4.98	□□□□□ -1.61
VPS9	YML097C	THI5	P43534	340 aa		4.98	□□□□□ -1.61
VPS9	YML097C	THI11	P47183	340 aa		4.98	□□□□□ -1.61
VPS9	YML097C	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.98	□□□□□ -1.61	not detected
VPS9	YML097C	THI13	Q07748	340 aa		4.98	□□□□□ -1.61
VPS9	YML097C	ARG82	P07250	355 aa		4.97	□□□□□ -1.61
VPS9	YML097C	PHO87	P25360	923 aa		4.97	□□□□□ -1.61
VPS9	YML097C	YHL050C	P38721	697 aa		4.97	□□□□□ -1.61
VPS9	YML097C	YHR219W	P38900	624 aa		4.97	□□□□□ -1.61
VPS9	YML097C	FIG4	P42837	879 aa		4.97	□□□□□ -1.61
VPS9	YML097C	RPA14	P50106	137 aa		4.97	□□□□□ -1.61
VPS9	YML097C	TCB1	Q12466	1186 aa		4.97	□□□□□ -1.61
VPS9	YML097C	MRT4	P33201	236 aa	Known RBP	4.96	□□□□□ -1.62
VPS9	YML097C	ROG3	P43602	733 aa		4.96	□□□□□ -1.62
VPS9	YML097C	ALD2	P47771	506 aa		4.96	□□□□□ -1.62
VPS9	YML097C	ACS2	P52910	683 aa	Known RBP	4.96	□□□□□ -1.62
VPS9	YML097C	MSC6	Q08818	692 aa	Known RBP	4.96	□□□□□ -1.62
VPS9	YML097C	HAP4	P14064	554 aa		4.95	□□□□□ -1.62
VPS9	YML097C	PDI1	P17967	522 aa	Known RBP	4.95	□□□□□ -1.62
VPS9	YML097C	ASF1	P32447	279 aa		4.95	□□□□□ -1.62
VPS9	YML097C	AAD14	P42884	376 aa		4.95	□□□□□ -1.62
VPS9	YML097C	POL32	P47110	350 aa		4.95	□□□□□ -1.62
VPS9	YML097C	PUN1	Q06991	263 aa		4.95	□□□□□ -1.62
VPS9	YML097C	FRA1	Q07825	749 aa		4.95	□□□□□ -1.62
VPS9	YML097C	ROM1	P53046	1155 aa		4.94	□□□□□ -1.62
VPS9	YML097C	NSG2	P53898	299 aa		4.94	□□□□□ -1.62
VPS9	YML097C	APP1	P53933	587 aa		4.94	□□□□□ -1.62
VPS9	YML097C	CWC15	Q03772	175 aa	Known RBP	4.94	□□□□□ -1.62
VPS9	YML097C	PNP1	Q05788	311 aa		4.94	□□□□□ -1.62
VPS9	YML097C	YPR097W	Q06839	1073 aa		4.94	□□□□□ -1.62
VPS9	YML097C	FUR4	P05316	633 aa	Known RBP	4.93	□□□□□ -1.62
VPS9	YML097C	PUF6	Q04373	656 aa	Known RBP	4.93	□□□□□ -1.62
VPS9	YML097C	YPR084W	Q06821	456 aa		4.93	□□□□□ -1.62
VPS9	YML097C	GLO3	P38682	493 aa	Known RBP	4.92	□□□□□ -1.62
VPS9	YML097C	BOL3	P39724	118 aa		4.92	□□□□□ -1.62
VPS9	YML097C	MDJ2	P42834	146 aa		4.92	□□□□□ -1.62
VPS9	YML097C	YJR098C	P47139	656 aa		4.92	□□□□□ -1.62
VPS9	YML097C	TRL1	P09880	827 aa	Known RBP	4.91	□□□□□ -1.62
VPS9	YML097C	TY1A-MR1	Q04215	440 aa		4.91	□□□□□ -1.62
VPS9	YML097C	THI72	Q08579	599 aa		4.91	□□□□□ -1.62
VPS9	YML097C	PHM7	Q12252	991 aa		4.91	□□□□□ -1.62
VPS9	YML097C	DPH6	Q12429	685 aa		4.91	□□□□□ -1.62
VPS9	YML097C	ATE1	P16639	503 aa		4.91	□□□□□ -1.62
VPS9	YML097C	VAN1	P23642	535 aa		4.91	□□□□□ -1.62
VPS9	YML097C	OSH7	P38755	437 aa		4.91	□□□□□ -1.62
VPS9	YML097C	QDR1	P40475	563 aa		4.91	□□□□□ -1.62
VPS9	YML097C	ISR1	Q06098	443 aa	Known RBP	4.91	□□□□□ -1.62
VPS9	YML097C	GAS4	Q08271	471 aa		4.91	□□□□□ -1.62
VPS9	YML097C	CBC2	Q08920	208 aa	Known RBP RIP-Chip data	4.91	□□□□□ -1.62	not detected
VPS9	YML097C	WHI5	Q12416	295 aa		4.91	□□□□□ -1.62
VPS9	YML097C	TSC13	Q99190	310 aa		4.91	□□□□□ -1.62
VPS9	YML097C	SRS2	P12954	1174 aa		4.9	□□□□□ -1.63
VPS9	YML097C	ATG1	P53104	897 aa		4.9	□□□□□ -1.63
VPS9	YML097C	OYE2	Q03558	400 aa	Known RBP	4.9	□□□□□ -1.63
VPS9	YML097C	UTP13	Q05946	817 aa	Known RBP	4.9	□□□□□ -1.63
VPS9	YML097C	PPX1	P38698	397 aa		4.89	□□□□□ -1.63
VPS9	YML097C	HAL5	P38970	855 aa	Known RBP	4.89	□□□□□ -1.63
VPS9	YML097C	SBP1	P10080	294 aa	Known RBP	4.88	□□□□□ -1.63
VPS9	YML097C	AIM9	P40053	627 aa	Known RBP	4.88	□□□□□ -1.63
VPS9	YML097C	APL6	P46682	809 aa		4.88	□□□□□ -1.63
VPS9	YML097C	NUT2	Q06213	157 aa		4.88	□□□□□ -1.63
VPS9	YML097C	TRS33	Q99394	268 aa		4.88	□□□□□ -1.63
VPS9	YML097C	VAC17	P25591	423 aa		4.87	□□□□□ -1.63
VPS9	YML097C	SEC8	P32855	1065 aa		4.87	□□□□□ -1.63
VPS9	YML097C	NTH2	P35172	780 aa		4.87	□□□□□ -1.63
VPS9	YML097C	YBL086C	P38177	466 aa		4.87	□□□□□ -1.63
VPS9	YML097C	YFL034W	P43564	1073 aa		4.87	□□□□□ -1.63
VPS9	YML097C	ALD4	P46367	519 aa	Known RBP	4.87	□□□□□ -1.63
VPS9	YML097C	JIP5	Q06214	492 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS9	YML097C	RRP15	Q06511	250 aa	Predicted RBP	4.87	□□□□□ -1.63
VPS9	YML097C	FRT1	Q99332	602 aa		4.87	□□□□□ -1.63
VPS9	YML097C	CCP1	P00431	361 aa		4.86	□□□□□ -1.63
VPS9	YML097C	MGE1	P38523	228 aa		4.86	□□□□□ -1.63
VPS9	YML097C	RTT106	P40161	455 aa		4.86	□□□□□ -1.63
VPS9	YML097C	HDA3	Q06623	655 aa		4.86	□□□□□ -1.63
VPS9	YML097C	NAP1	P25293	417 aa	Known RBP	4.85	□□□□□ -1.63
VPS9	YML097C	LYS5	P50113	272 aa		4.85	□□□□□ -1.63
VPS9	YML097C	CWH41	P53008	833 aa		4.85	□□□□□ -1.63
VPS9	YML097C	ATG20	Q07528	640 aa		4.85	□□□□□ -1.63
VPS9	YML097C	CYT1	P07143	309 aa		4.84	□□□□□ -1.63
VPS9	YML097C	FOX2	Q02207	900 aa	Known RBP	4.84	□□□□□ -1.63
VPS9	YML097C	IOC4	Q04213	475 aa		4.84	□□□□□ -1.63
VPS9	YML097C	MET1	P36150	593 aa		4.83	□□□□□ -1.64
VPS9	YML097C	ACF4	P47129	309 aa		4.83	□□□□□ -1.64
VPS9	YML097C	YTA7	P40340	1379 aa		4.82	□□□□□ -1.64
VPS9	YML097C	RPS6A	P0CX37	236 aa	Known RBP	4.82	□□□□□ -1.64
VPS9	YML097C	RPS6B	P0CX38	236 aa	Predicted RBP	4.82	□□□□□ -1.64
VPS9	YML097C	MET4	P32389	672 aa		4.82	□□□□□ -1.64
VPS9	YML097C	SUV3	P32580	737 aa		4.82	□□□□□ -1.64
VPS9	YML097C	BOI1	P38041	980 aa	Known RBP	4.81	□□□□□ -1.64
VPS9	YML097C	SVF1	Q05515	481 aa		4.81	□□□□□ -1.64
VPS9	YML097C	STB3	Q12427	513 aa		4.81	□□□□□ -1.64
VPS9	YML097C	DAT1	P13483	248 aa	Known RBP	4.8	□□□□□ -1.64
VPS9	YML097C	UTR2	P32623	467 aa		4.8	□□□□□ -1.64
VPS9	YML097C	ISC10	P32645	267 aa		4.8	□□□□□ -1.64
VPS9	YML097C	JJJ3	P47138	172 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 14.5 ms