RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeastyeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SIR4YDR227W ENP1P38333 483 aaKnown RBP2.79□□□□□ -1.96
SIR4YDR227W TIM54P47045 478 aa2.79□□□□□ -1.96
SIR4YDR227W RRT6P53117 311 aaPredicted RBP2.79□□□□□ -1.96
SIR4YDR227W PDR1P12383 1068 aa2.79□□□□□ -1.96
SIR4YDR227W TFC3P34111 1160 aa2.79□□□□□ -1.96
SIR4YDR227W MPE1P35728 441 aaKnown RBP2.79□□□□□ -1.96
SIR4YDR227W DAS1P47005 663 aa2.79□□□□□ -1.96
SIR4YDR227W DIB1Q06819 143 aaPredicted RBP2.79□□□□□ -1.96
SIR4YDR227W BBC1P47068 1157 aa2.79□□□□□ -1.96
SIR4YDR227W WRS1Q12109 432 aaKnown RBP2.79□□□□□ -1.96
SIR4YDR227W YBL113CQ7M4S9 792 aa2.79□□□□□ -1.96
SIR4YDR227W SIT4P20604 311 aa2.78□□□□□ -1.96
SIR4YDR227W ALD6P54115 500 aaKnown RBP2.78□□□□□ -1.96
SIR4YDR227W TFG1P41895 735 aaPredicted RBP2.78□□□□□ -1.96
SIR4YDR227W CLA4P48562 842 aa2.78□□□□□ -1.96
SIR4YDR227W ECM23Q02710 187 aa2.78□□□□□ -1.96
SIR4YDR227W GCN2P15442 1659 aa2.78□□□□□ -1.96
SIR4YDR227W MHP1P43638 1398 aa2.78□□□□□ -1.96
SIR4YDR227W FBP1P09201 348 aa2.78□□□□□ -1.97
SIR4YDR227W ETP1P38748 585 aaKnown RBP2.78□□□□□ -1.97
SIR4YDR227W YEN1P40028 759 aa2.78□□□□□ -1.97
SIR4YDR227W BMT6Q12291 365 aa2.77□□□□□ -1.97
SIR4YDR227W HIF1Q12373 385 aa2.77□□□□□ -1.97
SIR4YDR227W TIF11P38912 153 aaKnown RBP2.77□□□□□ -1.97
SIR4YDR227W CTH1P47976 325 aa2.77□□□□□ -1.97
SIR4YDR227W GRX6Q12438 231 aa2.77□□□□□ -1.97
SIR4YDR227W TIF1P10081 395 aaKnown RBP2.77□□□□□ -1.97
SIR4YDR227W SEC7P11075 2009 aaKnown RBP2.77□□□□□ -1.97
SIR4YDR227W UBX7P38349 436 aa2.77□□□□□ -1.97
SIR4YDR227W KIC1P38692 1080 aa2.77□□□□□ -1.97
SIR4YDR227W NNF1P47149 201 aa2.77□□□□□ -1.97
SIR4YDR227W KAR5Q04746 504 aa2.77□□□□□ -1.97
SIR4YDR227W RPT2P40327 437 aaKnown RBP2.76□□□□□ -1.97
SIR4YDR227W TCB1Q12466 1186 aa2.76□□□□□ -1.97
SIR4YDR227W ARG8P18544 423 aa2.76□□□□□ -1.97
SIR4YDR227W PRI2P20457 528 aa2.76□□□□□ -1.97
SIR4YDR227W HEM3P28789 327 aa2.76□□□□□ -1.97
SIR4YDR227W BIO2P32451 375 aa2.76□□□□□ -1.97
SIR4YDR227W YNR021WP53723 404 aaKnown RBP2.76□□□□□ -1.97
SIR4YDR227W UBX5Q06682 500 aa2.76□□□□□ -1.97
SIR4YDR227W PKH3Q03306 898 aaPredicted RBP2.75□□□□□ -1.97
SIR4YDR227W MTC5Q03897 1148 aa2.75□□□□□ -1.97
SIR4YDR227W PRP5P21372 849 aaPredicted RBP2.75□□□□□ -1.97
SIR4YDR227W SWE1P32944 819 aa2.75□□□□□ -1.97
SIR4YDR227W YVH1Q02256 364 aaKnown RBP2.75□□□□□ -1.97
SIR4YDR227W SPP1Q03012 353 aa2.75□□□□□ -1.97
SIR4YDR227W MAL31P38156 614 aa2.75□□□□□ -1.97
SIR4YDR227W EPS1P40557 701 aa2.75□□□□□ -1.97
SIR4YDR227W MPP10P47083 593 aaKnown RBP2.74□□□□□ -1.97
SIR4YDR227W MCM6P53091 1017 aaKnown RBP2.74□□□□□ -1.97
SIR4YDR227W MET6P05694 767 aaKnown RBP2.74□□□□□ -1.97
SIR4YDR227W BLI1P35727 113 aa2.74□□□□□ -1.97
SIR4YDR227W MET1P36150 593 aa2.74□□□□□ -1.97
SIR4YDR227W MNN4P36044 1178 aa2.74□□□□□ -1.97
SIR4YDR227W VHR2P40041 505 aa2.74□□□□□ -1.97
SIR4YDR227W TY4A-JP47023 414 aa2.74□□□□□ -1.97
SIR4YDR227W CYT1P07143 309 aa2.73□□□□□ -1.97
SIR4YDR227W RAM2P29703 316 aa2.73□□□□□ -1.97
SIR4YDR227W YAF9P53930 226 aa2.73□□□□□ -1.97
SIR4YDR227W UBP3Q01477 912 aaKnown RBP RIP-Chip data2.73□□□□□ -1.97not detected
SIR4YDR227W MSN5P52918 1224 aa2.73□□□□□ -1.97
SIR4YDR227W ART5P53244 586 aaKnown RBP2.73□□□□□ -1.97
SIR4YDR227W TRX2P22803 104 aaKnown RBP2.73□□□□□ -1.97
SIR4YDR227W PMC1P38929 1173 aaPredicted RBP2.73□□□□□ -1.97
SIR4YDR227W MNN1P39106 762 aa2.73□□□□□ -1.97
SIR4YDR227W VNX1P42839 908 aa2.73□□□□□ -1.97
SIR4YDR227W BDP1P46678 594 aa2.73□□□□□ -1.97
SIR4YDR227W MAP1Q01662 387 aaKnown RBP RIP-Chip data2.73□□□□□ -1.97not detected
SIR4YDR227W ERO1Q03103 563 aa2.73□□□□□ -1.97
SIR4YDR227W POB3Q04636 552 aaKnown RBP2.73□□□□□ -1.97
SIR4YDR227W NOP8Q08287 484 aaPredicted RBP2.73□□□□□ -1.97
SIR4YDR227W SEC8P32855 1065 aa2.73□□□□□ -1.97
SIR4YDR227W SEC61P32915 480 aa2.73□□□□□ -1.97
SIR4YDR227W MGE1P38523 228 aa2.73□□□□□ -1.97
SIR4YDR227W UBX2Q04228 584 aa2.73□□□□□ -1.97
SIR4YDR227W YRM1Q12340 786 aa2.73□□□□□ -1.97
SIR4YDR227W NOC2P39744 710 aaKnown RBP2.72□□□□□ -1.97
SIR4YDR227W TY3B-IQ7LHG5 1498 aaKnown RBP2.72□□□□□ -1.97
SIR4YDR227W RAD4P14736 754 aa2.72□□□□□ -1.97
SIR4YDR227W GFD2P25370 566 aaKnown RBP2.72□□□□□ -1.97
SIR4YDR227W MCM2P29469 868 aa2.72□□□□□ -1.97
SIR4YDR227W DLD1P32891 587 aa2.72□□□□□ -1.97
SIR4YDR227W HAL5P38970 855 aaKnown RBP2.72□□□□□ -1.97
SIR4YDR227W YNR029CP53729 429 aaKnown RBP2.72□□□□□ -1.97
SIR4YDR227W APP1P53933 587 aa2.72□□□□□ -1.97
SIR4YDR227W MEH1Q02205 184 aa2.72□□□□□ -1.97
SIR4YDR227W TIM50Q02776 476 aa2.72□□□□□ -1.97
SIR4YDR227W SFP1P32432 683 aa2.72□□□□□ -1.97
SIR4YDR227W CHZ1P40019 153 aaPredicted RBP2.72□□□□□ -1.97
SIR4YDR227W CWC15Q03772 175 aaKnown RBP2.72□□□□□ -1.97
SIR4YDR227W VPS29P38759 282 aa2.71□□□□□ -1.98
SIR4YDR227W SHC1P39000 512 aa2.71□□□□□ -1.98
SIR4YDR227W CRF1Q04930 467 aa2.71□□□□□ -1.98
SIR4YDR227W YMR084WA2P2R3 262 aa2.71□□□□□ -1.98
SIR4YDR227W SRM1P21827 482 aa2.71□□□□□ -1.98
SIR4YDR227W MSM1P22438 575 aa2.71□□□□□ -1.98
SIR4YDR227W TIF4631P39935 952 aaKnown RBP2.71□□□□□ -1.98
SIR4YDR227W IES1P43579 692 aa2.71□□□□□ -1.98
SIR4YDR227W OPI1P21957 404 aa2.71□□□□□ -1.98
SIR4YDR227W PAM1P37304 830 aaKnown RBP2.71□□□□□ -1.98
Retrieved 100 of 5,963 RNA–protein pairs in 55.4 ms