RNA–Protein interactions for RNA: YDR049W

VMS1, Transcript of Component of a Cdc48p-complex involved in protein quality control, yeastyeast

Gene VMS1, Length 1,899 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VMS1YDR049W ATG16Q03818 150 aa6.87□□□□□ -1.31
VMS1YDR049W YOR378WQ08902 515 aa6.87□□□□□ -1.31
VMS1YDR049W MIF2P35201 549 aa6.87□□□□□ -1.31
VMS1YDR049W MUM2P38236 366 aa6.87□□□□□ -1.31
VMS1YDR049W PEX8P53248 589 aa6.87□□□□□ -1.31
VMS1YDR049W PEP12P32854 288 aa6.86□□□□□ -1.31
VMS1YDR049W YGR021WP53212 290 aa6.86□□□□□ -1.31
VMS1YDR049W CWC15Q03772 175 aaKnown RBP6.86□□□□□ -1.31
VMS1YDR049W SPO20Q04359 397 aa6.86□□□□□ -1.31
VMS1YDR049W MET4P32389 672 aa6.85□□□□□ -1.31
VMS1YDR049W SWI3P32591 825 aa6.85□□□□□ -1.31
VMS1YDR049W CRP1P38845 465 aaKnown RBP6.85□□□□□ -1.31
VMS1YDR049W SYH1Q02875 849 aaKnown RBP6.85□□□□□ -1.31
VMS1YDR049W JIP4Q03361 876 aa6.85□□□□□ -1.31
VMS1YDR049W ESF1Q06344 628 aaKnown RBP6.85□□□□□ -1.31
VMS1YDR049W CLN2P20438 545 aa6.84□□□□□ -1.31
VMS1YDR049W SPT5P27692 1063 aaKnown RBP6.84□□□□□ -1.31
VMS1YDR049W BOI1P38041 980 aaKnown RBP6.84□□□□□ -1.31
VMS1YDR049W UBX7P38349 436 aa6.84□□□□□ -1.31
VMS1YDR049W NUP82P40368 713 aa6.84□□□□□ -1.31
VMS1YDR049W NUT2Q06213 157 aa6.84□□□□□ -1.31
VMS1YDR049W TFC3P34111 1160 aa6.83□□□□□ -1.32
VMS1YDR049W VHR2P40041 505 aa6.83□□□□□ -1.32
VMS1YDR049W RAD4P14736 754 aa6.83□□□□□ -1.32
VMS1YDR049W SNF7P39929 240 aaKnown RBP6.83□□□□□ -1.32
VMS1YDR049W PKH3Q03306 898 aaPredicted RBP6.83□□□□□ -1.32
VMS1YDR049W VPS5Q92331 675 aa6.83□□□□□ -1.32
VMS1YDR049W SRM1P21827 482 aa6.82□□□□□ -1.32
VMS1YDR049W CDC11P32458 415 aa6.82□□□□□ -1.32
VMS1YDR049W VID27P40157 782 aa6.82□□□□□ -1.32
VMS1YDR049W RTF1P53064 558 aa6.82□□□□□ -1.32
VMS1YDR049W SLX4Q12098 748 aa6.82□□□□□ -1.32
VMS1YDR049W GYP5Q12344 894 aa6.82□□□□□ -1.32
VMS1YDR049W FRT1Q99332 602 aa6.82□□□□□ -1.32
VMS1YDR049W SAP30P38429 201 aa6.81□□□□□ -1.32
VMS1YDR049W PKH1Q03407 766 aa6.81□□□□□ -1.32
VMS1YDR049W IMH1Q06704 911 aaKnown RBP6.81□□□□□ -1.32
VMS1YDR049W PPM2Q08282 695 aa6.81□□□□□ -1.32
VMS1YDR049W MTC2P34246 357 aa6.81□□□□□ -1.32
VMS1YDR049W IES5P40060 125 aa6.81□□□□□ -1.32
VMS1YDR049W MTO1P53070 669 aa6.81□□□□□ -1.32
VMS1YDR049W GDE1Q02979 1223 aa6.81□□□□□ -1.32
VMS1YDR049W FOB1O13329 566 aa6.8□□□□□ -1.32
VMS1YDR049W TY1B-AO13527 1196 aaKnown RBP6.8□□□□□ -1.32
VMS1YDR049W GAL2P13181 574 aa6.8□□□□□ -1.32
VMS1YDR049W TAT2P38967 592 aa6.8□□□□□ -1.32
VMS1YDR049W KTR7P40504 517 aa6.8□□□□□ -1.32
VMS1YDR049W HUL5P53119 910 aa6.8□□□□□ -1.32
VMS1YDR049W HST2P53686 357 aa6.8□□□□□ -1.32
VMS1YDR049W SPR28Q04921 423 aa6.8□□□□□ -1.32
VMS1YDR049W PUS1Q12211 544 aaKnown RBP6.8□□□□□ -1.32
VMS1YDR049W HTA1P04911 132 aaKnown RBP6.79□□□□□ -1.32
VMS1YDR049W HTA2P04912 132 aa6.79□□□□□ -1.32
VMS1YDR049W PHO8P11491 566 aa6.79□□□□□ -1.32
VMS1YDR049W BOL3P39724 118 aa6.79□□□□□ -1.32
VMS1YDR049W DAN4P47179 1161 aa6.79□□□□□ -1.32
VMS1YDR049W RMD1Q03441 430 aa6.79□□□□□ -1.32
VMS1YDR049W YLR326WQ06170 240 aaKnown RBP6.79□□□□□ -1.32
VMS1YDR049W MPH2P0CD99 609 aa6.79□□□□□ -1.32
VMS1YDR049W MPH3P0CE00 602 aa6.79□□□□□ -1.32
VMS1YDR049W YDL129WQ07555 291 aa6.79□□□□□ -1.32
VMS1YDR049W RRI2Q12348 645 aa6.79□□□□□ -1.32
VMS1YDR049W MIP1P15801 1254 aa6.78□□□□□ -1.32
VMS1YDR049W MCM2P29469 868 aa6.78□□□□□ -1.32
VMS1YDR049W TIM23P32897 222 aa6.78□□□□□ -1.32
VMS1YDR049W KIC1P38692 1080 aa6.78□□□□□ -1.32
VMS1YDR049W YAP1801P38856 637 aa6.78□□□□□ -1.32
VMS1YDR049W DAS1P47005 663 aa6.78□□□□□ -1.32
VMS1YDR049W ACF4P47129 309 aa6.78□□□□□ -1.32
VMS1YDR049W HOS2P53096 452 aaPredicted RBP6.78□□□□□ -1.32
VMS1YDR049W RDS2P19541 446 aaKnown RBP6.77□□□□□ -1.33
VMS1YDR049W HSE1P38753 452 aa6.77□□□□□ -1.33
VMS1YDR049W YNR029CP53729 429 aaKnown RBP6.77□□□□□ -1.33
VMS1YDR049W PUF6Q04373 656 aaKnown RBP6.77□□□□□ -1.33
VMS1YDR049W NOP14Q99207 810 aaKnown RBP6.77□□□□□ -1.33
VMS1YDR049W ATP4P05626 244 aa6.77□□□□□ -1.33
VMS1YDR049W HAP4P14064 554 aa6.77□□□□□ -1.33
VMS1YDR049W CHL1P22516 861 aaPredicted RBP6.77□□□□□ -1.33
VMS1YDR049W ESS1P22696 170 aa6.77□□□□□ -1.33
VMS1YDR049W BCK2P33306 851 aa6.77□□□□□ -1.33
VMS1YDR049W DCW1P36091 449 aa6.77□□□□□ -1.33
VMS1YDR049W PES4P39684 611 aa6.77□□□□□ -1.33
VMS1YDR049W GRX3Q03835 250 aa6.77□□□□□ -1.33
VMS1YDR049W YLR125WQ12138 136 aa6.77□□□□□ -1.33
VMS1YDR049W TMA7Q3E764 64 aaKnown RBP6.77□□□□□ -1.33
VMS1YDR049W HSC82P15108 705 aaKnown RBP6.76□□□□□ -1.33
VMS1YDR049W GRX1P25373 110 aaKnown RBP6.76□□□□□ -1.33
VMS1YDR049W JNM1P36224 373 aa6.76□□□□□ -1.33
VMS1YDR049W QDR1P40475 563 aa6.76□□□□□ -1.33
VMS1YDR049W FPK1P53739 893 aa6.76□□□□□ -1.33
VMS1YDR049W NAB6Q03735 1134 aaKnown RBP RIP-Chip data6.76□□□□□ -1.33not detected
VMS1YDR049W SXM1Q04175 944 aaKnown RBP6.76□□□□□ -1.33
VMS1YDR049W PNP1Q05788 311 aa6.76□□□□□ -1.33
VMS1YDR049W NYV1Q12255 253 aa6.76□□□□□ -1.33
VMS1YDR049W MMP1Q12372 583 aa6.76□□□□□ -1.33
VMS1YDR049W RTP1Q12751 981 aa6.76□□□□□ -1.33
VMS1YDR049W INH1P01097 85 aa6.75□□□□□ -1.33
VMS1YDR049W YPP1P46951 817 aa6.75□□□□□ -1.33
VMS1YDR049W NIS1P53939 407 aa6.75□□□□□ -1.33
VMS1YDR049W GRC3Q07845 632 aa6.75□□□□□ -1.33
Retrieved 100 of 5,963 RNA–protein pairs in 29.1 ms