RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 C11orf95C9JLR9 678 aaPredicted RBP2.78□□□□□ -1.96
VPS35-212ENST00000640313 TNFRSF10AO00220 468 aa2.78□□□□□ -1.96
VPS35-212ENST00000640313 DPYSL4O14531 572 aa2.78□□□□□ -1.96
VPS35-212ENST00000640313 GTPBP6O43824 516 aaPredicted RBP2.78□□□□□ -1.96
VPS35-212ENST00000640313 SMCPP49901 116 aaPredicted RBP2.78□□□□□ -1.96
VPS35-212ENST00000640313 NBR1Q14596 966 aa2.78□□□□□ -1.96
VPS35-212ENST00000640313 NUDT18Q6ZVK8 323 aa2.78□□□□□ -1.96
VPS35-212ENST00000640313 RBM27Q9P2N5 1060 aaKnown RBP2.78□□□□□ -1.96
VPS35-212ENST00000640313 DACH1Q9UI36 760 aa2.78□□□□□ -1.96
VPS35-212ENST00000640313 FAM181BA6NEQ2 426 aa2.77□□□□□ -1.97
VPS35-212ENST00000640313 RNF40O75150 1001 aa2.77□□□□□ -1.97
VPS35-212ENST00000640313 CTC1Q2NKJ3 1217 aa2.77□□□□□ -1.97
VPS35-212ENST00000640313 SWT1Q5T5J6 900 aaKnown RBP2.77□□□□□ -1.97
VPS35-212ENST00000640313 TTC13Q8NBP0 860 aa2.77□□□□□ -1.97
VPS35-212ENST00000640313 PKD2L1Q9P0L9 805 aa2.77□□□□□ -1.97
VPS35-212ENST00000640313 GMPR2Q9P2T1 348 aaKnown RBP2.77□□□□□ -1.97
VPS35-212ENST00000640313 PCDHB3Q9Y5E6 796 aa2.77□□□□□ -1.97
VPS35-212ENST00000640313 SPDYE16A6NNV3 312 aaPredicted RBP2.76□□□□□ -1.97
VPS35-212ENST00000640313 TERTO14746 1132 aaKnown RBP2.76□□□□□ -1.97
VPS35-212ENST00000640313 PPEF1O14829 653 aaPredicted RBP2.76□□□□□ -1.97
VPS35-212ENST00000640313 AXIN1O15169 862 aa2.76□□□□□ -1.97
VPS35-212ENST00000640313 SLC4A3P48751 1232 aa2.76□□□□□ -1.97
VPS35-212ENST00000640313 SUZ12Q15022 739 aaKnown RBP2.76□□□□□ -1.97
VPS35-212ENST00000640313 PDIA6Q15084 440 aa2.76□□□□□ -1.97
VPS35-212ENST00000640313 LCE2CQ5TA81 110 aa2.76□□□□□ -1.97
VPS35-212ENST00000640313 BLOC1S3Q6QNY0 202 aa2.76□□□□□ -1.97
VPS35-212ENST00000640313 TOR4AQ9NXH8 423 aa2.76□□□□□ -1.97
VPS35-212ENST00000640313 S1PR4O95977 384 aa2.75□□□□□ -1.97
VPS35-212ENST00000640313 CADPS2Q86UW7 1296 aa2.75□□□□□ -1.97
VPS35-212ENST00000640313 ACTN4O43707 911 aaKnown RBP2.74□□□□□ -1.97
VPS35-212ENST00000640313 ADH1BP00325 375 aa2.74□□□□□ -1.97
VPS35-212ENST00000640313 LORP23490 312 aaPredicted RBP2.74□□□□□ -1.97
VPS35-212ENST00000640313 RPIAP49247 311 aa2.74□□□□□ -1.97
VPS35-212ENST00000640313 PRIM1P49642 420 aaKnown RBP2.74□□□□□ -1.97
VPS35-212ENST00000640313 PLA2G2CQ5R387 149 aa2.74□□□□□ -1.97
VPS35-212ENST00000640313 EYA1Q99502 592 aa2.74□□□□□ -1.97
VPS35-212ENST00000640313 TLL1O43897 1013 aa2.73□□□□□ -1.97
VPS35-212ENST00000640313 FOXC1Q12948 553 aa2.73□□□□□ -1.97
VPS35-212ENST00000640313 SLC6A16Q9GZN6 736 aa2.73□□□□□ -1.97
VPS35-212ENST00000640313 SENP2Q9HC62 589 aa2.73□□□□□ -1.97
VPS35-212ENST00000640313 CD2BP2O95400 341 aaKnown RBP2.72□□□□□ -1.97
VPS35-212ENST00000640313 SNRPBP14678 240 aaKnown RBP2.72□□□□□ -1.97
VPS35-212ENST00000640313 OSBPP22059 807 aa2.72□□□□□ -1.97
VPS35-212ENST00000640313 CYP4X1Q8N118 509 aa2.72□□□□□ -1.97
VPS35-212ENST00000640313 ZSCAN1Q8NBB4 408 aa2.72□□□□□ -1.97
VPS35-212ENST00000640313 TRIM47Q96LD4 638 aa2.72□□□□□ -1.97
VPS35-212ENST00000640313 ATP13A2Q9NQ11 1180 aa2.72□□□□□ -1.97
VPS35-212ENST00000640313 NPDC1Q9NQX5 325 aaPredicted RBP2.72□□□□□ -1.97
VPS35-212ENST00000640313 NR1I2O75469 434 aa2.71□□□□□ -1.98
VPS35-212ENST00000640313 KMT5BQ4FZB7 885 aa2.71□□□□□ -1.98
VPS35-212ENST00000640313 PADI6Q6TGC4 694 aa2.71□□□□□ -1.98
VPS35-212ENST00000640313 SLC16A10Q8TF71 515 aa2.71□□□□□ -1.98
VPS35-212ENST00000640313 KIFC2Q96AC6 838 aa2.71□□□□□ -1.98
VPS35-212ENST00000640313 CDHR5Q9HBB8 845 aa2.71□□□□□ -1.98
VPS35-212ENST00000640313 ARIH1Q9Y4X5 557 aaPredicted RBP2.71□□□□□ -1.98
VPS35-212ENST00000640313 GRXCR2A6NFK2 248 aa2.7□□□□□ -1.98
VPS35-212ENST00000640313 SCUBE3Q8IX30 993 aa2.7□□□□□ -1.98
VPS35-212ENST00000640313 NPAS3Q8IXF0 933 aa2.7□□□□□ -1.98
VPS35-212ENST00000640313 SMPD1P17405 629 aa2.69□□□□□ -1.98
VPS35-212ENST00000640313 DNAJB2P25686 324 aa2.69□□□□□ -1.98
VPS35-212ENST00000640313 GMPRP36959 345 aa2.69□□□□□ -1.98
VPS35-212ENST00000640313 SPSB2Q99619 263 aa2.69□□□□□ -1.98
VPS35-212ENST00000640313 TMEM134Q9H6X4 195 aa2.69□□□□□ -1.98
VPS35-212ENST00000640313 NXF1Q9UBU9 619 aaKnown RBP2.69□□□□□ -1.98
VPS35-212ENST00000640313 TTC24A2A3L6 582 aaPredicted RBP2.68□□□□□ -1.98
VPS35-212ENST00000640313 CFHP08603 1231 aa2.68□□□□□ -1.98
VPS35-212ENST00000640313 KCNMA1Q12791 1236 aa2.68□□□□□ -1.98
VPS35-212ENST00000640313 SNIP1Q8TAD8 396 aaKnown RBP2.68□□□□□ -1.98
VPS35-212ENST00000640313 IRF7Q92985 503 aa2.68□□□□□ -1.98
VPS35-212ENST00000640313 WNT7AO00755 349 aa2.67□□□□□ -1.98
VPS35-212ENST00000640313 SLC10A3P09131 477 aa2.67□□□□□ -1.98
VPS35-212ENST00000640313 RBM46Q8TBY0 533 aaKnown RBP2.67□□□□□ -1.98
VPS35-212ENST00000640313 H3BM21 787 aa2.66□□□□□ -1.98
VPS35-212ENST00000640313 GSK3AP49840 483 aa2.66□□□□□ -1.98
VPS35-212ENST00000640313 E2F4Q16254 413 aa2.66□□□□□ -1.98
VPS35-212ENST00000640313 THAP11Q96EK4 314 aa2.66□□□□□ -1.98
VPS35-212ENST00000640313 FCF1Q9Y324 198 aaKnown RBP2.66□□□□□ -1.98
VPS35-212ENST00000640313 RCCD1A6NED2 376 aa2.65□□□□□ -1.99
VPS35-212ENST00000640313 J3QL48 77 aa2.65□□□□□ -1.99
VPS35-212ENST00000640313 ZBTB24O43167 697 aaPredicted RBP2.65□□□□□ -1.99
VPS35-212ENST00000640313 KCTD17Q8N5Z5 321 aa2.65□□□□□ -1.99
VPS35-212ENST00000640313 FAM160A2Q8N612 972 aaPredicted RBP2.65□□□□□ -1.99
VPS35-212ENST00000640313 HPS1Q92902 700 aa2.65□□□□□ -1.99
VPS35-212ENST00000640313 SALL2Q9Y467 1007 aaPredicted RBP2.65□□□□□ -1.99
VPS35-212ENST00000640313 ADGRG1Q9Y653 693 aa2.65□□□□□ -1.99
VPS35-212ENST00000640313 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP2.64□□□□□ -1.99
VPS35-212ENST00000640313 PUS10Q3MIT2 529 aaKnown RBP2.64□□□□□ -1.99
VPS35-212ENST00000640313 RSPH4AQ5TD94 716 aa2.64□□□□□ -1.99
VPS35-212ENST00000640313 TMEM151AQ8N4L1 468 aa2.64□□□□□ -1.99
VPS35-212ENST00000640313 MRGPRX2Q96LB1 330 aa2.64□□□□□ -1.99
VPS35-212ENST00000640313 ERBB4Q15303 1308 aa2.64□□□□□ -1.99
VPS35-212ENST00000640313 FMNL1O95466 1100 aaPredicted RBP2.63□□□□□ -1.99
VPS35-212ENST00000640313 TRIM32Q13049 653 aa2.63□□□□□ -1.99
VPS35-212ENST00000640313 PTGDRQ13258 359 aa2.63□□□□□ -1.99
VPS35-212ENST00000640313 MORN1Q5T089 497 aa2.63□□□□□ -1.99
VPS35-212ENST00000640313 REPIN1Q9BWE0 567 aaKnown RBP2.63□□□□□ -1.99
VPS35-212ENST00000640313 VSIG8P0DPA2 414 aa2.62□□□□□ -1.99
VPS35-212ENST00000640313 VEGFBP49765 207 aa2.62□□□□□ -1.99
VPS35-212ENST00000640313 MSS51Q4VC12 460 aa2.62□□□□□ -1.99
VPS35-212ENST00000640313 BRICD5Q6PL45 260 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms