RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 RIMS2Q9UQ26 1411 aa26.84■■□□□ 1.89
PNKP-230ENST00000638016 NUTM2DQ5VT03 806 aaPredicted RBP26.81■■□□□ 1.88
PNKP-230ENST00000638016 XIRP1Q702N8 1843 aaKnown RBP26.81■■□□□ 1.88
PNKP-230ENST00000638016 PIP4K2BP78356 416 aa26.8■■□□□ 1.88
PNKP-230ENST00000638016 SCAF1Q9H7N4 1312 aaKnown RBP26.79■■□□□ 1.88
PNKP-230ENST00000638016 BCANQ96GW7 911 aa26.77■■□□□ 1.88
PNKP-230ENST00000638016 CLTCL1P53675 1640 aa26.76■■□□□ 1.87
PNKP-230ENST00000638016 PLEKHG1Q9ULL1 1385 aa26.75■■□□□ 1.87
PNKP-230ENST00000638016 PPP1R15AO75807 674 aaPredicted RBP26.75■■□□□ 1.87
PNKP-230ENST00000638016 TRIM52Q96A61 297 aa26.75■■□□□ 1.87
PNKP-230ENST00000638016 TOM1O60784 492 aa26.74■■□□□ 1.87
PNKP-230ENST00000638016 RBM33Q96EV2 1170 aaKnown RBP26.73■■□□□ 1.87
PNKP-230ENST00000638016 NWD1Q149M9 1564 aa26.71■■□□□ 1.87
PNKP-230ENST00000638016 TRPM2O94759 1503 aa26.7■■□□□ 1.87
PNKP-230ENST00000638016 KCNA6P17658 529 aa26.7■■□□□ 1.86
PNKP-230ENST00000638016 ADAMTS13Q76LX8 1427 aa26.68■■□□□ 1.86
PNKP-230ENST00000638016 HSPA1LP34931 641 aa26.68■■□□□ 1.86
PNKP-230ENST00000638016 TMEM94Q12767 1356 aa26.68■■□□□ 1.86
PNKP-230ENST00000638016 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.66■■□□□ 1.86
PNKP-230ENST00000638016 CHD2O14647 1828 aaKnown RBP26.66■■□□□ 1.86
PNKP-230ENST00000638016 SLC4A1APQ9BWU0 796 aaKnown RBP26.65■■□□□ 1.86
PNKP-230ENST00000638016 HDGFP51858 240 aaKnown RBP26.64■■□□□ 1.86
PNKP-230ENST00000638016 FOXD1Q16676 465 aa26.64■■□□□ 1.86
PNKP-230ENST00000638016 NKTRP30414 1462 aaKnown RBP26.62■■□□□ 1.85
PNKP-230ENST00000638016 NRXN3Q9Y4C0 1643 aa26.62■■□□□ 1.85
PNKP-230ENST00000638016 ZNF326Q5BKZ1 582 aaKnown RBP26.62■■□□□ 1.85
PNKP-230ENST00000638016 PROSER2Q86WR7 435 aaPredicted RBP26.62■■□□□ 1.85
PNKP-230ENST00000638016 KIF1BO60333 1816 aa26.61■■□□□ 1.85
PNKP-230ENST00000638016 NEXMIFQ5QGS0 1516 aa26.6■■□□□ 1.85
PNKP-230ENST00000638016 DISP3Q9P2K9 1392 aa26.59■■□□□ 1.85
PNKP-230ENST00000638016 TBX22Q9Y458 520 aa26.59■■□□□ 1.85
PNKP-230ENST00000638016 DIP2AQ14689 1571 aa26.58■■□□□ 1.85
PNKP-230ENST00000638016 PTPRUQ92729 1446 aa26.56■■□□□ 1.84
PNKP-230ENST00000638016 SETBP1Q9Y6X0 1596 aa26.54■■□□□ 1.84
PNKP-230ENST00000638016 MPHOSPH9Q99550 1183 aa26.51■■□□□ 1.83
PNKP-230ENST00000638016 SETD5Q9C0A6 1442 aa26.49■■□□□ 1.83
PNKP-230ENST00000638016 METP08581 1390 aa26.48■■□□□ 1.83
PNKP-230ENST00000638016 PIK3R4Q99570 1358 aa26.48■■□□□ 1.83
PNKP-230ENST00000638016 MSH6P52701 1360 aa26.47■■□□□ 1.83
PNKP-230ENST00000638016 ILDR2Q71H61 639 aa26.47■■□□□ 1.83
PNKP-230ENST00000638016 AMOTL2Q9Y2J4 779 aa26.47■■□□□ 1.83
PNKP-230ENST00000638016 XRN1Q8IZH2 1706 aaKnown RBP26.47■■□□□ 1.83
PNKP-230ENST00000638016 ROBO1Q9Y6N7 1651 aa26.47■■□□□ 1.83
PNKP-230ENST00000638016 RAB3GAP2Q9H2M9 1393 aa26.46■■□□□ 1.83
PNKP-230ENST00000638016 PPLO60437 1756 aa26.45■■□□□ 1.82
PNKP-230ENST00000638016 MED1Q15648 1581 aaPredicted RBP26.45■■□□□ 1.82
PNKP-230ENST00000638016 SETD1AO15047 1707 aaKnown RBP26.42■■□□□ 1.82
PNKP-230ENST00000638016 FAM135BQ49AJ0 1406 aa26.42■■□□□ 1.82
PNKP-230ENST00000638016 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.42■■□□□ 1.82
PNKP-230ENST00000638016 CCDC144AA2RUR9 1427 aa26.41■■□□□ 1.82
PNKP-230ENST00000638016 C14orf37Q86TY3 774 aa26.41■■□□□ 1.82
PNKP-230ENST00000638016 SPATA31E1Q6ZUB1 1445 aa26.38■■□□□ 1.81
PNKP-230ENST00000638016 RGL3Q3MIN7 710 aa26.37■■□□□ 1.81
PNKP-230ENST00000638016 NCOA3Q9Y6Q9 1424 aa26.37■■□□□ 1.81
PNKP-230ENST00000638016 SLAIN2Q9P270 581 aa26.36■■□□□ 1.81
PNKP-230ENST00000638016 IFT172Q9UG01 1749 aa26.34■■□□□ 1.81
PNKP-230ENST00000638016 VGFO15240 615 aaPredicted RBP26.34■■□□□ 1.81
PNKP-230ENST00000638016 RPGRIP1LQ68CZ1 1315 aa26.34■■□□□ 1.81
PNKP-230ENST00000638016 ADGRF5Q8IZF2 1346 aa26.33■■□□□ 1.81
PNKP-230ENST00000638016 C19orf44Q9H6X5 657 aa26.31■■□□□ 1.8
PNKP-230ENST00000638016 NALCNQ8IZF0 1738 aa26.31■■□□□ 1.8
PNKP-230ENST00000638016 PHLPP1O60346 1717 aa26.29■■□□□ 1.8
PNKP-230ENST00000638016 ATF3P18847 181 aa26.27■■□□□ 1.8
PNKP-230ENST00000638016 ROBO2Q9HCK4 1378 aa26.27■■□□□ 1.8
PNKP-230ENST00000638016 CADPS2Q86UW7 1296 aa26.26■■□□□ 1.79
PNKP-230ENST00000638016 ADGRL3Q9HAR2 1447 aa26.24■■□□□ 1.79
PNKP-230ENST00000638016 ASXL1Q8IXJ9 1541 aa26.24■■□□□ 1.79
PNKP-230ENST00000638016 COL16A1Q07092 1604 aaPredicted RBP26.23■■□□□ 1.79
PNKP-230ENST00000638016 DCCP43146 1447 aa26.22■■□□□ 1.79
PNKP-230ENST00000638016 MST1RQ04912 1400 aa26.22■■□□□ 1.79
PNKP-230ENST00000638016 PTCH1Q13635 1447 aa26.22■■□□□ 1.79
PNKP-230ENST00000638016 ANKRD30BQ9BXX2 1392 aa26.21■■□□□ 1.79
PNKP-230ENST00000638016 ACIN1Q9UKV3 1341 aaKnown RBP26.21■■□□□ 1.79
PNKP-230ENST00000638016 PIK3C2GO75747 1445 aa26.2■■□□□ 1.78
PNKP-230ENST00000638016 BRINP3Q76B58 766 aa26.19■■□□□ 1.78
PNKP-230ENST00000638016 PRAG1Q86YV5 1406 aa26.18■■□□□ 1.78
PNKP-230ENST00000638016 PHF23Q9BUL5 403 aaPredicted RBP26.18■■□□□ 1.78
PNKP-230ENST00000638016 AHDC1Q5TGY3 1603 aaPredicted RBP26.17■■□□□ 1.78
PNKP-230ENST00000638016 TMEM132EQ6IEE7 984 aa26.16■■□□□ 1.78
PNKP-230ENST00000638016 STK26Q9P289 416 aa26.15■■□□□ 1.78
PNKP-230ENST00000638016 DDX17Q92841 729 aaKnown RBP26.13■■□□□ 1.77
PNKP-230ENST00000638016 NRXN1Q9ULB1 1477 aa26.12■■□□□ 1.77
PNKP-230ENST00000638016 RGS17Q9UGC6 210 aaPredicted RBP26.12■■□□□ 1.77
PNKP-230ENST00000638016 MYOM2P54296 1465 aa26.11■■□□□ 1.77
PNKP-230ENST00000638016 JCADQ9P266 1359 aa26.11■■□□□ 1.77
PNKP-230ENST00000638016 NHSL1Q5SYE7 1610 aa26.1■■□□□ 1.77
PNKP-230ENST00000638016 PLEKHH1Q9ULM0 1364 aa26.1■■□□□ 1.77
PNKP-230ENST00000638016 HRCP23327 699 aa26.1■■□□□ 1.77
PNKP-230ENST00000638016 LRPPRCP42704 1394 aaKnown RBP26.09■■□□□ 1.77
PNKP-230ENST00000638016 KNDC1Q76NI1 1749 aa26.09■■□□□ 1.77
PNKP-230ENST00000638016 SOCS7O14512 581 aa26.09■■□□□ 1.77
PNKP-230ENST00000638016 WAPLQ7Z5K2 1190 aa26.09■■□□□ 1.77
PNKP-230ENST00000638016 C1orf167Q5SNV9 1468 aa26.09■■□□□ 1.77
PNKP-230ENST00000638016 TECPR2O15040 1411 aa26.08■■□□□ 1.77
PNKP-230ENST00000638016 CFAP70Q5T0N1 1121 aa26.08■■□□□ 1.77
PNKP-230ENST00000638016 LRP6O75581 1613 aa26.06■■□□□ 1.76
PNKP-230ENST00000638016 YTHDC2Q9H6S0 1430 aaKnown RBP26.06■■□□□ 1.76
PNKP-230ENST00000638016 C14orf93Q9H972 538 aaKnown RBP26.05■■□□□ 1.76
PNKP-230ENST00000638016 SHPRHQ149N8 1683 aa26.05■■□□□ 1.76
PNKP-230ENST00000638016 ORAI2Q96SN7 254 aa26.04■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms