RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 RBM33Q96EV2 1170 aaKnown RBP26.83■■□□□ 1.89
CLN3-247ENST00000636351 PROSER2Q86WR7 435 aaPredicted RBP26.82■■□□□ 1.88
CLN3-247ENST00000636351 BCANQ96GW7 911 aa26.82■■□□□ 1.88
CLN3-247ENST00000636351 FAM135BQ49AJ0 1406 aa26.82■■□□□ 1.88
CLN3-247ENST00000636351 NWD1Q149M9 1564 aa26.8■■□□□ 1.88
CLN3-247ENST00000636351 NKTRP30414 1462 aaKnown RBP26.8■■□□□ 1.88
CLN3-247ENST00000636351 ZFYVE9O95405 1425 aa26.79■■□□□ 1.88
CLN3-247ENST00000636351 UNC13BO14795 1591 aa26.79■■□□□ 1.88
CLN3-247ENST00000636351 GCC2Q8IWJ2 1684 aa26.76■■□□□ 1.87
CLN3-247ENST00000636351 RIMS2Q9UQ26 1411 aa26.76■■□□□ 1.87
CLN3-247ENST00000636351 PLEKHG1Q9ULL1 1385 aa26.75■■□□□ 1.87
CLN3-247ENST00000636351 PPP1R15AO75807 674 aaPredicted RBP26.75■■□□□ 1.87
CLN3-247ENST00000636351 TMEM131LA2VDJ0 1609 aa26.75■■□□□ 1.87
CLN3-247ENST00000636351 ROBO1Q9Y6N7 1651 aa26.74■■□□□ 1.87
CLN3-247ENST00000636351 MYO5BQ9ULV0 1848 aa26.74■■□□□ 1.87
CLN3-247ENST00000636351 NAIPQ13075 1403 aa26.73■■□□□ 1.87
CLN3-247ENST00000636351 HFM1A2PYH4 1435 aa26.72■■□□□ 1.87
CLN3-247ENST00000636351 CHGAP10645 457 aaKnown RBP26.71■■□□□ 1.87
CLN3-247ENST00000636351 MSH6P52701 1360 aa26.71■■□□□ 1.87
CLN3-247ENST00000636351 HDGFP51858 240 aaKnown RBP26.7■■□□□ 1.86
CLN3-247ENST00000636351 RGS17Q9UGC6 210 aaPredicted RBP26.7■■□□□ 1.86
CLN3-247ENST00000636351 E9PCH4 1651 aa26.7■■□□□ 1.86
CLN3-247ENST00000636351 IQGAP3Q86VI3 1631 aa26.67■■□□□ 1.86
CLN3-247ENST00000636351 CHD2O14647 1828 aaKnown RBP26.65■■□□□ 1.86
CLN3-247ENST00000636351 NUTM2DQ5VT03 806 aaPredicted RBP26.65■■□□□ 1.86
CLN3-247ENST00000636351 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.65■■□□□ 1.86
CLN3-247ENST00000636351 TBX22Q9Y458 520 aa26.64■■□□□ 1.86
CLN3-247ENST00000636351 NUP155O75694 1391 aa26.63■■□□□ 1.85
CLN3-247ENST00000636351 SLAIN2Q9P270 581 aa26.63■■□□□ 1.85
CLN3-247ENST00000636351 ADAMTS13Q76LX8 1427 aa26.62■■□□□ 1.85
CLN3-247ENST00000636351 DIP2AQ14689 1571 aa26.58■■□□□ 1.85
CLN3-247ENST00000636351 PHLPP1O60346 1717 aa26.57■■□□□ 1.84
CLN3-247ENST00000636351 C14orf37Q86TY3 774 aa26.57■■□□□ 1.84
CLN3-247ENST00000636351 TRIM52Q96A61 297 aa26.56■■□□□ 1.84
CLN3-247ENST00000636351 NCOA3Q9Y6Q9 1424 aa26.56■■□□□ 1.84
CLN3-247ENST00000636351 POTEAQ6S8J7 498 aa26.54■■□□□ 1.84
CLN3-247ENST00000636351 PIK3R4Q99570 1358 aa26.54■■□□□ 1.84
CLN3-247ENST00000636351 SETD5Q9C0A6 1442 aa26.54■■□□□ 1.84
CLN3-247ENST00000636351 JCADQ9P266 1359 aa26.53■■□□□ 1.84
CLN3-247ENST00000636351 TRPM2O94759 1503 aa26.51■■□□□ 1.83
CLN3-247ENST00000636351 COL16A1Q07092 1604 aaPredicted RBP26.5■■□□□ 1.83
CLN3-247ENST00000636351 AMOTL2Q9Y2J4 779 aa26.49■■□□□ 1.83
CLN3-247ENST00000636351 PTPRUQ92729 1446 aa26.48■■□□□ 1.83
CLN3-247ENST00000636351 SIPA1L2Q9P2F8 1722 aaPredicted RBP26.48■■□□□ 1.83
CLN3-247ENST00000636351 CADPS2Q86UW7 1296 aa26.48■■□□□ 1.83
CLN3-247ENST00000636351 C19orf44Q9H6X5 657 aa26.48■■□□□ 1.83
CLN3-247ENST00000636351 ATF3P18847 181 aa26.47■■□□□ 1.83
CLN3-247ENST00000636351 RAB3GAP2Q9H2M9 1393 aa26.46■■□□□ 1.83
CLN3-247ENST00000636351 SPHKAPQ2M3C7 1700 aa26.45■■□□□ 1.83
CLN3-247ENST00000636351 NRXN3Q9Y4C0 1643 aa26.44■■□□□ 1.82
CLN3-247ENST00000636351 ZNF326Q5BKZ1 582 aaKnown RBP26.43■■□□□ 1.82
CLN3-247ENST00000636351 SETBP1Q9Y6X0 1596 aa26.42■■□□□ 1.82
CLN3-247ENST00000636351 AHDC1Q5TGY3 1603 aaPredicted RBP26.42■■□□□ 1.82
CLN3-247ENST00000636351 LRP6O75581 1613 aa26.4■■□□□ 1.82
CLN3-247ENST00000636351 XRN1Q8IZH2 1706 aaKnown RBP26.4■■□□□ 1.82
CLN3-247ENST00000636351 TRIM26Q12899 539 aaPredicted RBP26.4■■□□□ 1.82
CLN3-247ENST00000636351 SLC4A1APQ9BWU0 796 aaKnown RBP26.4■■□□□ 1.82
CLN3-247ENST00000636351 SPATA31A6Q5VVP1 1343 aa26.39■■□□□ 1.81
CLN3-247ENST00000636351 ACIN1Q9UKV3 1341 aaKnown RBP26.39■■□□□ 1.81
CLN3-247ENST00000636351 CLTCL1P53675 1640 aa26.37■■□□□ 1.81
CLN3-247ENST00000636351 BRINP3Q76B58 766 aa26.37■■□□□ 1.81
CLN3-247ENST00000636351 DCCP43146 1447 aa26.37■■□□□ 1.81
CLN3-247ENST00000636351 METP08581 1390 aa26.36■■□□□ 1.81
CLN3-247ENST00000636351 MEX3CQ5U5Q3 659 aaKnown RBP26.34■■□□□ 1.81
CLN3-247ENST00000636351 SHPRHQ149N8 1683 aa26.34■■□□□ 1.81
CLN3-247ENST00000636351 NEXMIFQ5QGS0 1516 aa26.34■■□□□ 1.81
CLN3-247ENST00000636351 SETD1AO15047 1707 aaKnown RBP26.33■■□□□ 1.81
CLN3-247ENST00000636351 MST1RQ04912 1400 aa26.31■■□□□ 1.8
CLN3-247ENST00000636351 ASXL1Q8IXJ9 1541 aa26.31■■□□□ 1.8
CLN3-247ENST00000636351 MPHOSPH9Q99550 1183 aa26.3■■□□□ 1.8
CLN3-247ENST00000636351 ZNF772Q68DY9 489 aaPredicted RBP26.27■■□□□ 1.8
CLN3-247ENST00000636351 ADGRL3Q9HAR2 1447 aa26.27■■□□□ 1.8
CLN3-247ENST00000636351 HRCP23327 699 aa26.26■■□□□ 1.79
CLN3-247ENST00000636351 FOXD1Q16676 465 aa26.26■■□□□ 1.79
CLN3-247ENST00000636351 NUTM2BA6NNL0 878 aaPredicted RBP26.25■■□□□ 1.79
CLN3-247ENST00000636351 NUTM2EB1AL46 878 aaPredicted RBP26.25■■□□□ 1.79
CLN3-247ENST00000636351 NUTM2AQ8IVF1 878 aaPredicted RBP26.25■■□□□ 1.79
CLN3-247ENST00000636351 KIF1BO60333 1816 aa26.24■■□□□ 1.79
CLN3-247ENST00000636351 NHSL1Q5SYE7 1610 aa26.24■■□□□ 1.79
CLN3-247ENST00000636351 NALCNQ8IZF0 1738 aa26.22■■□□□ 1.79
CLN3-247ENST00000636351 DDX17Q92841 729 aaKnown RBP26.2■■□□□ 1.78
CLN3-247ENST00000636351 VGFO15240 615 aaPredicted RBP26.18■■□□□ 1.78
CLN3-247ENST00000636351 LRRC59Q96AG4 307 aaKnown RBP26.18■■□□□ 1.78
CLN3-247ENST00000636351 PTCH1Q13635 1447 aa26.17■■□□□ 1.78
CLN3-247ENST00000636351 ROBO2Q9HCK4 1378 aa26.15■■□□□ 1.78
CLN3-247ENST00000636351 AFF2P51816 1311 aa26.14■■□□□ 1.78
CLN3-247ENST00000636351 RXRBP28702 533 aa26.14■■□□□ 1.78
CLN3-247ENST00000636351 C1orf167Q5SNV9 1468 aa26.14■■□□□ 1.78
CLN3-247ENST00000636351 PNPLA6Q8IY17 1366 aa26.13■■□□□ 1.77
CLN3-247ENST00000636351 CCDC144AA2RUR9 1427 aa26.13■■□□□ 1.77
CLN3-247ENST00000636351 RPGRIP1LQ68CZ1 1315 aa26.13■■□□□ 1.77
CLN3-247ENST00000636351 PRAG1Q86YV5 1406 aa26.09■■□□□ 1.77
CLN3-247ENST00000636351 UPF1Q92900 1129 aaKnown RBP eCLIP26.09■■□□□ 1.77
CLN3-247ENST00000636351 C8orf37Q96NL8 207 aa26.09■■□□□ 1.77
CLN3-247ENST00000636351 PCGF6Q9BYE7 350 aa26.08■■□□□ 1.77
CLN3-247ENST00000636351 PPLO60437 1756 aa26.07■■□□□ 1.76
CLN3-247ENST00000636351 CDK12Q9NYV4 1490 aaPredicted RBP26.07■■□□□ 1.76
CLN3-247ENST00000636351 ORAI2Q96SN7 254 aa26.07■■□□□ 1.76
CLN3-247ENST00000636351 LAMC1P11047 1609 aa26.05■■□□□ 1.76
CLN3-247ENST00000636351 SOS2Q07890 1332 aaPredicted RBP26.03■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms