RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 ZFYVE9O95405 1425 aa20.08■□□□□ 0.81
CLN3-242ENST00000635958 PPLO60437 1756 aa20.08■□□□□ 0.81
CLN3-242ENST00000635958 NEXMIFQ5QGS0 1516 aa20.08■□□□□ 0.81
CLN3-242ENST00000635958 MYO5BQ9ULV0 1848 aa20.08■□□□□ 0.8
CLN3-242ENST00000635958 RALGAPBQ86X10 1494 aa20.07■□□□□ 0.8
CLN3-242ENST00000635958 VGFO15240 615 aaPredicted RBP20.06■□□□□ 0.8
CLN3-242ENST00000635958 ADGRF5Q8IZF2 1346 aa20.05■□□□□ 0.8
CLN3-242ENST00000635958 UBR1Q8IWV7 1749 aa20.05■□□□□ 0.8
CLN3-242ENST00000635958 PLPPR3Q6T4P5 718 aa20.04■□□□□ 0.8
CLN3-242ENST00000635958 CENPBP07199 599 aaPredicted RBP20.03■□□□□ 0.8
CLN3-242ENST00000635958 TRPM1Q7Z4N2 1603 aa20.03■□□□□ 0.8
CLN3-242ENST00000635958 SCAF1Q9H7N4 1312 aaKnown RBP20.03■□□□□ 0.8
CLN3-242ENST00000635958 GPRASP1Q5JY77 1395 aa20.02■□□□□ 0.8
CLN3-242ENST00000635958 DIEXFQ68CQ4 756 aaKnown RBP20.02■□□□□ 0.8
CLN3-242ENST00000635958 MYO3AQ8NEV4 1616 aa20.02■□□□□ 0.8
CLN3-242ENST00000635958 PIK3C2GO75747 1445 aa20.01■□□□□ 0.79
CLN3-242ENST00000635958 RIMS2Q9UQ26 1411 aa20.01■□□□□ 0.79
CLN3-242ENST00000635958 TMEM2Q9UHN6 1383 aa20■□□□□ 0.79
CLN3-242ENST00000635958 HDGFP51858 240 aaKnown RBP20■□□□□ 0.79
CLN3-242ENST00000635958 ABCF1Q8NE71 845 aaKnown RBP eCLIP20■□□□□ 0.79
CLN3-242ENST00000635958 KIAA1210Q9ULL0 1709 aa20■□□□□ 0.79
CLN3-242ENST00000635958 THEMISQ8N1K5 641 aaPredicted RBP19.99■□□□□ 0.79
CLN3-242ENST00000635958 NBPF1Q3BBV0 1214 aa19.99■□□□□ 0.79
CLN3-242ENST00000635958 C14orf93Q9H972 538 aaKnown RBP19.98■□□□□ 0.79
CLN3-242ENST00000635958 ROCK2O75116 1388 aaKnown RBP19.98■□□□□ 0.79
CLN3-242ENST00000635958 CEP170BQ9Y4F5 1589 aaPredicted RBP19.98■□□□□ 0.79
CLN3-242ENST00000635958 ZNF316A6NFI3 1004 aaPredicted RBP19.97■□□□□ 0.79
CLN3-242ENST00000635958 ARHGAP23Q9P227 1491 aa19.97■□□□□ 0.79
CLN3-242ENST00000635958 CARD11Q9BXL7 1154 aa19.97■□□□□ 0.79
CLN3-242ENST00000635958 SLIT1O75093 1534 aa19.96■□□□□ 0.79
CLN3-242ENST00000635958 EIF4G2P78344 907 aaKnown RBP eCLIP19.96■□□□□ 0.791e-9■■■■□ 22.4
CLN3-242ENST00000635958 NUTM2DQ5VT03 806 aaPredicted RBP19.96■□□□□ 0.79
CLN3-242ENST00000635958 LAMC1P11047 1609 aa19.96■□□□□ 0.79
CLN3-242ENST00000635958 ZNF142P52746 1687 aaPredicted RBP19.96■□□□□ 0.79
CLN3-242ENST00000635958 CFAP70Q5T0N1 1121 aa19.95■□□□□ 0.78
CLN3-242ENST00000635958 HSPA5P11021 654 aaKnown RBP19.92■□□□□ 0.78
CLN3-242ENST00000635958 SETBP1Q9Y6X0 1596 aa19.91■□□□□ 0.78
CLN3-242ENST00000635958 LTKP29376 864 aa19.91■□□□□ 0.78
CLN3-242ENST00000635958 LMTK3Q96Q04 1460 aa19.91■□□□□ 0.78
CLN3-242ENST00000635958 USP47Q96K76 1375 aa19.91■□□□□ 0.78
CLN3-242ENST00000635958 EID1Q9Y6B2 187 aa19.9■□□□□ 0.78
CLN3-242ENST00000635958 TXNDC2Q86VQ3 553 aa19.9■□□□□ 0.78
CLN3-242ENST00000635958 ADGRB1O14514 1584 aa19.89■□□□□ 0.77
CLN3-242ENST00000635958 PLEKHG1Q9ULL1 1385 aa19.88■□□□□ 0.77
CLN3-242ENST00000635958 ALKQ9UM73 1620 aa19.87■□□□□ 0.77
CLN3-242ENST00000635958 SCAF11Q99590 1463 aaKnown RBP19.86■□□□□ 0.77
CLN3-242ENST00000635958 HIRIP3Q9BW71 556 aaPredicted RBP19.86■□□□□ 0.77
CLN3-242ENST00000635958 NRXN3Q9Y4C0 1643 aa19.85■□□□□ 0.77
CLN3-242ENST00000635958 IQGAP1P46940 1657 aa19.84■□□□□ 0.77
CLN3-242ENST00000635958 ANKLE2Q86XL3 938 aa19.83■□□□□ 0.77
CLN3-242ENST00000635958 ST20-MTHFSA0A0A6YYL1 179 aa19.83■□□□□ 0.76
CLN3-242ENST00000635958 TMEM132EQ6IEE7 984 aa19.83■□□□□ 0.76
CLN3-242ENST00000635958 MED14O60244 1454 aa19.82■□□□□ 0.76
CLN3-242ENST00000635958 SETD1AO15047 1707 aaKnown RBP19.82■□□□□ 0.76
CLN3-242ENST00000635958 ADAMTS13Q76LX8 1427 aa19.82■□□□□ 0.76
CLN3-242ENST00000635958 ASXL1Q8IXJ9 1541 aa19.81■□□□□ 0.76
CLN3-242ENST00000635958 ILDR1Q86SU0 546 aaPredicted RBP19.8■□□□□ 0.76
CLN3-242ENST00000635958 TBX22Q9Y458 520 aa19.79■□□□□ 0.76
CLN3-242ENST00000635958 EIF3AQ14152 1382 aaKnown RBP19.79■□□□□ 0.76
CLN3-242ENST00000635958 YTHDC2Q9H6S0 1430 aaKnown RBP19.77■□□□□ 0.76
CLN3-242ENST00000635958 HSPA2P54652 639 aa19.77■□□□□ 0.76
CLN3-242ENST00000635958 TESK2Q96S53 571 aa19.77■□□□□ 0.76
CLN3-242ENST00000635958 SENP3Q9H4L4 574 aaPredicted RBP19.77■□□□□ 0.76
CLN3-242ENST00000635958 METP08581 1390 aa19.77■□□□□ 0.75
CLN3-242ENST00000635958 BCANQ96GW7 911 aa19.76■□□□□ 0.75
CLN3-242ENST00000635958 LRPPRCP42704 1394 aaKnown RBP19.76■□□□□ 0.75
CLN3-242ENST00000635958 TRAK1Q9UPV9 953 aa19.76■□□□□ 0.75
CLN3-242ENST00000635958 ABCC11Q96J66 1382 aa19.75■□□□□ 0.75
CLN3-242ENST00000635958 C11orf95C9JLR9 678 aaPredicted RBP19.75■□□□□ 0.75
CLN3-242ENST00000635958 DIP2AQ14689 1571 aa19.74■□□□□ 0.75
CLN3-242ENST00000635958 SLC24A1O60721 1099 aa19.74■□□□□ 0.75
CLN3-242ENST00000635958 SLC26A8Q96RN1 970 aa19.73■□□□□ 0.75
CLN3-242ENST00000635958 WASHC2AQ641Q2 1341 aa19.72■□□□□ 0.75
CLN3-242ENST00000635958 SIRT1Q96EB6 747 aa19.72■□□□□ 0.75
CLN3-242ENST00000635958 SBNO2Q9Y2G9 1366 aa19.72■□□□□ 0.75
CLN3-242ENST00000635958 DLC1Q96QB1 1528 aa19.71■□□□□ 0.75
CLN3-242ENST00000635958 CENPJQ9HC77 1338 aaPredicted RBP19.71■□□□□ 0.75
CLN3-242ENST00000635958 TECPR2O15040 1411 aa19.71■□□□□ 0.75
CLN3-242ENST00000635958 NPHP4O75161 1426 aaPredicted RBP19.71■□□□□ 0.75
CLN3-242ENST00000635958 STK26Q9P289 416 aa19.71■□□□□ 0.75
CLN3-242ENST00000635958 PIK3R4Q99570 1358 aa19.71■□□□□ 0.75
CLN3-242ENST00000635958 POLR1AO95602 1720 aaPredicted RBP19.71■□□□□ 0.74
CLN3-242ENST00000635958 CCDC7Q96M83 1385 aa19.7■□□□□ 0.74
CLN3-242ENST00000635958 ARHGEF28Q8N1W1 1705 aaKnown RBP19.7■□□□□ 0.74
CLN3-242ENST00000635958 NCKAP5LQ9HCH0 1330 aa19.7■□□□□ 0.74
CLN3-242ENST00000635958 KIF7Q2M1P5 1343 aa19.68■□□□□ 0.74
CLN3-242ENST00000635958 TMF1P82094 1093 aa19.67■□□□□ 0.74
CLN3-242ENST00000635958 KNDC1Q76NI1 1749 aa19.67■□□□□ 0.74
CLN3-242ENST00000635958 PTPRUQ92729 1446 aa19.67■□□□□ 0.74
CLN3-242ENST00000635958 FAM135BQ49AJ0 1406 aa19.66■□□□□ 0.74
CLN3-242ENST00000635958 PRAM1Q96QH2 718 aa19.65■□□□□ 0.74
CLN3-242ENST00000635958 CPS1P31327 1500 aa19.64■□□□□ 0.74
CLN3-242ENST00000635958 DISP3Q9P2K9 1392 aa19.64■□□□□ 0.73
CLN3-242ENST00000635958 AMOTL2Q9Y2J4 779 aa19.64■□□□□ 0.73
CLN3-242ENST00000635958 POGKQ9P215 609 aa19.63■□□□□ 0.73
CLN3-242ENST00000635958 GTF3C3Q9Y5Q9 886 aa19.63■□□□□ 0.73
CLN3-242ENST00000635958 QRICH2Q9H0J4 1663 aa19.63■□□□□ 0.73
CLN3-242ENST00000635958 CDCA8Q53HL2 280 aa19.62■□□□□ 0.73
CLN3-242ENST00000635958 DDX10Q13206 875 aaKnown RBP19.62■□□□□ 0.73
CLN3-242ENST00000635958 ROBO2Q9HCK4 1378 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms