RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 SCAF11Q99590 1463 aaKnown RBP17■□□□□ 0.31
CCDC88A-214ENST00000621814 GOLGA2Q08379 1002 aa17■□□□□ 0.31
CCDC88A-214ENST00000621814 BLMP54132 1417 aaPredicted RBP17■□□□□ 0.31
CCDC88A-214ENST00000621814 TCERG1O14776 1098 aaKnown RBP16.99■□□□□ 0.31
CCDC88A-214ENST00000621814 UGGT1Q9NYU2 1555 aa16.99■□□□□ 0.31
CCDC88A-214ENST00000621814 NEUROD2Q15784 382 aa16.98■□□□□ 0.31
CCDC88A-214ENST00000621814 BCL11AQ9H165 835 aa16.98■□□□□ 0.31
CCDC88A-214ENST00000621814 DUSP27Q5VZP5 1158 aa16.97■□□□□ 0.31
CCDC88A-214ENST00000621814 TMEM132EQ6IEE7 984 aa16.97■□□□□ 0.31
CCDC88A-214ENST00000621814 EIF3AQ14152 1382 aaKnown RBP16.97■□□□□ 0.31
CCDC88A-214ENST00000621814 ADGRL1O94910 1474 aa16.97■□□□□ 0.31
CCDC88A-214ENST00000621814 ZFYVE16Q7Z3T8 1539 aa16.96■□□□□ 0.31
CCDC88A-214ENST00000621814 RTEL1-TNFRSF6BF6WH68 1400 aa16.96■□□□□ 0.31
CCDC88A-214ENST00000621814 CARD14Q9BXL6 1004 aa16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 SPINK5Q9NQ38 1064 aaPredicted RBP16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 UHRF1BP1LA0JNW5 1464 aa16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 MADDQ8WXG6 1647 aa16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 NPM1P06748 294 aaKnown RBP eCLIP16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 CLTCL1P53675 1640 aa16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 LAMC1P11047 1609 aa16.95■□□□□ 0.3
CCDC88A-214ENST00000621814 TRPM2O94759 1503 aa16.94■□□□□ 0.3
CCDC88A-214ENST00000621814 LAS1LQ9Y4W2 734 aaKnown RBP16.94■□□□□ 0.3
CCDC88A-214ENST00000621814 PTPRTO14522 1441 aa16.94■□□□□ 0.3
CCDC88A-214ENST00000621814 DEKP35659 375 aaKnown RBP16.93■□□□□ 0.3
CCDC88A-214ENST00000621814 BACH2Q9BYV9 841 aa16.93■□□□□ 0.3
CCDC88A-214ENST00000621814 ATP7AQ04656 1500 aa16.93■□□□□ 0.3
CCDC88A-214ENST00000621814 SAFB2Q14151 953 aaKnown RBP eCLIP16.92■□□□□ 0.3
CCDC88A-214ENST00000621814 CLASP1Q7Z460 1538 aa16.92■□□□□ 0.3
CCDC88A-214ENST00000621814 BCAR3O75815 825 aa16.92■□□□□ 0.3
CCDC88A-214ENST00000621814 ZMYM4Q5VZL5 1548 aa16.92■□□□□ 0.3
CCDC88A-214ENST00000621814 STAC3Q96MF2 364 aa16.92■□□□□ 0.3
CCDC88A-214ENST00000621814 SLC12A5Q9H2X9 1139 aa16.92■□□□□ 0.3
CCDC88A-214ENST00000621814 RRP7AQ9Y3A4 280 aaKnown RBP16.91■□□□□ 0.3
CCDC88A-214ENST00000621814 RGS3P49796 1198 aa16.9■□□□□ 0.3
CCDC88A-214ENST00000621814 DMRT2Q9Y5R5 561 aa16.9■□□□□ 0.3
CCDC88A-214ENST00000621814 ASXL1Q8IXJ9 1541 aa16.9■□□□□ 0.3
CCDC88A-214ENST00000621814 SLFN5Q08AF3 891 aa16.9■□□□□ 0.3
CCDC88A-214ENST00000621814 RTL5Q5HYW3 569 aaPredicted RBP16.9■□□□□ 0.3
CCDC88A-214ENST00000621814 ASXL2Q76L83 1435 aa16.89■□□□□ 0.3
CCDC88A-214ENST00000621814 RNF17Q9BXT8 1623 aaKnown RBP16.89■□□□□ 0.3
CCDC88A-214ENST00000621814 MORC1Q86VD1 984 aa16.89■□□□□ 0.29
CCDC88A-214ENST00000621814 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.89■□□□□ 0.29
CCDC88A-214ENST00000621814 SPHKAPQ2M3C7 1700 aa16.89■□□□□ 0.29
CCDC88A-214ENST00000621814 CENPJQ9HC77 1338 aaPredicted RBP16.88■□□□□ 0.29
CCDC88A-214ENST00000621814 NOS1P29475 1434 aa16.88■□□□□ 0.29
CCDC88A-214ENST00000621814 CANXP27824 592 aaKnown RBP16.87■□□□□ 0.29
CCDC88A-214ENST00000621814 ZNF521Q96K83 1311 aa16.86■□□□□ 0.29
CCDC88A-214ENST00000621814 RAPGEF3O95398 923 aa16.86■□□□□ 0.29
CCDC88A-214ENST00000621814 MS4A1P11836 297 aa16.86■□□□□ 0.29
CCDC88A-214ENST00000621814 IQGAP1P46940 1657 aa16.86■□□□□ 0.29
CCDC88A-214ENST00000621814 SLC4A3P48751 1232 aa16.85■□□□□ 0.29
CCDC88A-214ENST00000621814 FRAT1Q92837 279 aaPredicted RBP16.85■□□□□ 0.29
CCDC88A-214ENST00000621814 CFAP65Q6ZU64 1925 aaKnown RBP16.85■□□□□ 0.29
CCDC88A-214ENST00000621814 ERVK-7P63135 1459 aa16.84■□□□□ 0.29
CCDC88A-214ENST00000621814 INSRP06213 1382 aa16.84■□□□□ 0.29
CCDC88A-214ENST00000621814 STK26Q9P289 416 aa16.84■□□□□ 0.29
CCDC88A-214ENST00000621814 CEP152O94986 1710 aa16.84■□□□□ 0.29
CCDC88A-214ENST00000621814 SYNMO15061 1565 aa16.84■□□□□ 0.29
CCDC88A-214ENST00000621814 TET3O43151 1660 aa16.84■□□□□ 0.29
CCDC88A-214ENST00000621814 PIK3C2GO75747 1445 aa16.82■□□□□ 0.28
CCDC88A-214ENST00000621814 CENPQQ7L2Z9 268 aaPredicted RBP16.82■□□□□ 0.28
CCDC88A-214ENST00000621814 E9PSI1 815 aa16.81■□□□□ 0.28
CCDC88A-214ENST00000621814 SLC24A1O60721 1099 aa16.81■□□□□ 0.28
CCDC88A-214ENST00000621814 NSD3Q9BZ95 1437 aa16.81■□□□□ 0.28
CCDC88A-214ENST00000621814 BCL2L13Q9BXK5 485 aa16.81■□□□□ 0.28
CCDC88A-214ENST00000621814 MTHFSP49914 203 aa16.8■□□□□ 0.28
CCDC88A-214ENST00000621814 PANK1Q8TE04 598 aa16.8■□□□□ 0.28
CCDC88A-214ENST00000621814 KDM2BQ8NHM5 1336 aa16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 INO80Q9ULG1 1556 aaPredicted RBP16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 NEFMP07197 916 aa16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 WWC1Q8IX03 1113 aa16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 CABP2Q9NPB3 220 aa16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 COG6Q9Y2V7 657 aa16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 ARAP3Q8WWN8 1544 aa16.79■□□□□ 0.28
CCDC88A-214ENST00000621814 DEPDC5O75140 1603 aa16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 ABCA6Q8N139 1617 aa16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 C14orf93Q9H972 538 aaKnown RBP16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 DAXXQ9UER7 740 aaPredicted RBP16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 CD109Q6YHK3 1445 aa16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 KDM5AP29375 1690 aaKnown RBP16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 ABCA9Q8IUA7 1624 aa16.78■□□□□ 0.28
CCDC88A-214ENST00000621814 NPC1L1Q9UHC9 1359 aa16.77■□□□□ 0.28
CCDC88A-214ENST00000621814 MAP3K4Q9Y6R4 1608 aa16.77■□□□□ 0.28
CCDC88A-214ENST00000621814 TCP11L2Q8N4U5 519 aa16.77■□□□□ 0.27
CCDC88A-214ENST00000621814 TRMT2AQ8IZ69 625 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-214ENST00000621814 NKTRP30414 1462 aaKnown RBP16.76■□□□□ 0.27
CCDC88A-214ENST00000621814 MYOM1P52179 1685 aa16.76■□□□□ 0.27
CCDC88A-214ENST00000621814 NPATQ14207 1427 aa16.76■□□□□ 0.27
CCDC88A-214ENST00000621814 OSCARQ8IYS5 282 aa16.76■□□□□ 0.27
CCDC88A-214ENST00000621814 VWDEQ8N2E2 1590 aa16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 ZNF518AQ6AHZ1 1483 aa16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 IGHDP01880 384 aa16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 U2AF1L5P0DN76 240 aaPredicted RBP16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 U2AF1Q01081 240 aaKnown RBP eCLIP16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 CLUAP1Q96AJ1 413 aa16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 MROH1Q8NDA8 1641 aa16.75■□□□□ 0.27
CCDC88A-214ENST00000621814 EFCAB6Q5THR3 1501 aa16.74■□□□□ 0.27
CCDC88A-214ENST00000621814 MYOM2P54296 1465 aa16.74■□□□□ 0.27
CCDC88A-214ENST00000621814 SRPK2P78362 688 aaKnown RBP16.74■□□□□ 0.27
CCDC88A-214ENST00000621814 PPRC1Q5VV67 1664 aaKnown RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms