RNA–Protein interactions for RNA: ENST00000612946.4

TTC28-208, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TTC28, Length 11,274 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-208ENST00000612946 GOLGA6L10A0A0M3HER8 536 aa10.58□□□□□ -0.72
TTC28-208ENST00000612946 RBM28Q9NW13 759 aaKnown RBP10.58□□□□□ -0.72
TTC28-208ENST00000612946 SETSIPP0DME0 302 aa10.58□□□□□ -0.72
TTC28-208ENST00000612946 MICALCLQ6ZW33 695 aa10.58□□□□□ -0.72
TTC28-208ENST00000612946 DDX19BQ9UMR2 479 aa10.58□□□□□ -0.72
TTC28-208ENST00000612946 HSP90AB3PQ58FF7 597 aa10.58□□□□□ -0.72
TTC28-208ENST00000612946 PIP4K2AP48426 406 aaPredicted RBP10.58□□□□□ -0.72
TTC28-208ENST00000612946 MORC1Q86VD1 984 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 CUX1P39880 1505 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 ZBTB7CA1YPR0 619 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 CCDC73Q6ZRK6 1079 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 NBPF1Q3BBV0 1214 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 U2SURPO15042 1029 aaKnown RBP10.57□□□□□ -0.72
TTC28-208ENST00000612946 IVLP07476 585 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 C22orf23Q9BZE7 217 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 POTEB2H3BUK9 544 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 ERLIN2O94905 339 aa10.57□□□□□ -0.72
TTC28-208ENST00000612946 ZSCAN21Q9Y5A6 473 aaPredicted RBP10.57□□□□□ -0.72
TTC28-208ENST00000612946 PPP1R15AO75807 674 aaPredicted RBP10.56□□□□□ -0.72
TTC28-208ENST00000612946 MAP9Q49MG5 647 aa10.56□□□□□ -0.72
TTC28-208ENST00000612946 PATL2C9JE40 543 aaKnown RBP10.56□□□□□ -0.72
TTC28-208ENST00000612946 SMC4Q9NTJ3 1288 aa10.56□□□□□ -0.72
TTC28-208ENST00000612946 ZKSCAN1P17029 563 aaPredicted RBP10.56□□□□□ -0.72
TTC28-208ENST00000612946 CCDC47Q96A33 483 aaKnown RBP10.56□□□□□ -0.72
TTC28-208ENST00000612946 CREBRFQ8IUR6 639 aa10.56□□□□□ -0.72
TTC28-208ENST00000612946 KIF20AO95235 890 aa10.56□□□□□ -0.72
TTC28-208ENST00000612946 INTS3Q68E01 1043 aaKnown RBP10.55□□□□□ -0.72
TTC28-208ENST00000612946 SMARCE1Q969G3 411 aa10.55□□□□□ -0.72
TTC28-208ENST00000612946 CT47B1P0C2W7 299 aaPredicted RBP10.55□□□□□ -0.72
TTC28-208ENST00000612946 ZKSCAN2Q63HK3 967 aa10.55□□□□□ -0.72
TTC28-208ENST00000612946 SPAG9O60271 1321 aaKnown RBP10.55□□□□□ -0.72
TTC28-208ENST00000612946 KIAA1328Q86T90 577 aa10.55□□□□□ -0.72
TTC28-208ENST00000612946 SCAPERQ9BY12 1400 aa10.55□□□□□ -0.72
TTC28-208ENST00000612946 CCDC192P0DO97 292 aa10.55□□□□□ -0.72
TTC28-208ENST00000612946 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.54□□□□□ -0.72
TTC28-208ENST00000612946 NEUROD2Q15784 382 aa10.54□□□□□ -0.72
TTC28-208ENST00000612946 C11orf95C9JLR9 678 aaPredicted RBP10.54□□□□□ -0.72
TTC28-208ENST00000612946 GBP2P32456 591 aaPredicted RBP10.54□□□□□ -0.72
TTC28-208ENST00000612946 LUC7LQ9NQ29 371 aaKnown RBP10.54□□□□□ -0.72
TTC28-208ENST00000612946 BRD4O60885 1362 aaPredicted RBP10.54□□□□□ -0.72
TTC28-208ENST00000612946 SHTN1A0MZ66 631 aa10.54□□□□□ -0.72
TTC28-208ENST00000612946 NEMFO60524 1076 aa10.54□□□□□ -0.72
TTC28-208ENST00000612946 TRIM6-TRIM34B2RNG4 842 aa10.54□□□□□ -0.72
TTC28-208ENST00000612946 HS1BP3Q53T59 392 aa10.54□□□□□ -0.72
TTC28-208ENST00000612946 CPLX2Q6PUV4 134 aaKnown RBP10.53□□□□□ -0.72
TTC28-208ENST00000612946 SMG6Q86US8 1419 aaKnown RBP10.53□□□□□ -0.72
TTC28-208ENST00000612946 OLFM4Q6UX06 510 aa10.53□□□□□ -0.72
TTC28-208ENST00000612946 STK31Q9BXU1 1019 aa10.53□□□□□ -0.72
TTC28-208ENST00000612946 CAVIN2O95810 425 aa10.53□□□□□ -0.72
TTC28-208ENST00000612946 TUBB4AP04350 444 aa10.53□□□□□ -0.72
TTC28-208ENST00000612946 SMAP1Q8IYB5 467 aaPredicted RBP10.53□□□□□ -0.72
TTC28-208ENST00000612946 TUBB4BP68371 445 aa10.52□□□□□ -0.72
TTC28-208ENST00000612946 SIN3AQ96ST3 1273 aa10.52□□□□□ -0.72
TTC28-208ENST00000612946 CLGNO14967 610 aa10.52□□□□□ -0.72
TTC28-208ENST00000612946 WWC1Q8IX03 1113 aa10.52□□□□□ -0.72
TTC28-208ENST00000612946 DHX57Q6P158 1386 aaKnown RBP10.52□□□□□ -0.73
TTC28-208ENST00000612946 TULP1O00294 542 aaPredicted RBP10.52□□□□□ -0.73
TTC28-208ENST00000612946 RASSF8Q8NHQ8 419 aa10.52□□□□□ -0.73
TTC28-208ENST00000612946 PLEKHH1Q9ULM0 1364 aa10.52□□□□□ -0.73
TTC28-208ENST00000612946 CFDP1Q9UEE9 299 aaPredicted RBP10.52□□□□□ -0.73
TTC28-208ENST00000612946 UACAQ9BZF9 1416 aa10.52□□□□□ -0.73
TTC28-208ENST00000612946 CLCN1P35523 988 aa10.52□□□□□ -0.73
TTC28-208ENST00000612946 SLC26A8Q96RN1 970 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 TRIM5Q9C035 493 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 CBFA2T2O43439 604 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 RTF1Q92541 710 aaKnown RBP10.51□□□□□ -0.73
TTC28-208ENST00000612946 SPATA24Q86W54 205 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 CCDC91Q7Z6B0 441 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 MCTP1Q6DN14 999 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 FILIP1Q7Z7B0 1213 aa10.51□□□□□ -0.73
TTC28-208ENST00000612946 BBXQ8WY36 941 aaPredicted RBP10.51□□□□□ -0.73
TTC28-208ENST00000612946 PRKRIP1Q9H875 184 aaPredicted RBP10.51□□□□□ -0.73
TTC28-208ENST00000612946 TMCO3Q6UWJ1 677 aa10.5□□□□□ -0.73
TTC28-208ENST00000612946 GTF2A1P52655 376 aaPredicted RBP10.5□□□□□ -0.73
TTC28-208ENST00000612946 TERF1P54274 439 aa10.5□□□□□ -0.73
TTC28-208ENST00000612946 ANKRD18AQ8IVF6 992 aa10.5□□□□□ -0.73
TTC28-208ENST00000612946 CCDC18Q5T9S5 1454 aa10.5□□□□□ -0.73
TTC28-208ENST00000612946 BICD2Q8TD16 824 aa10.5□□□□□ -0.73
TTC28-208ENST00000612946 BACH2Q9BYV9 841 aa10.5□□□□□ -0.73
TTC28-208ENST00000612946 C14orf37Q86TY3 774 aa10.49□□□□□ -0.73
TTC28-208ENST00000612946 CDC45O75419 566 aa10.49□□□□□ -0.73
TTC28-208ENST00000612946 LRRCC1Q9C099 1032 aa10.49□□□□□ -0.73
TTC28-208ENST00000612946 MIA2Q96PC5 1412 aa10.49□□□□□ -0.73
TTC28-208ENST00000612946 KINO60870 393 aaKnown RBP10.49□□□□□ -0.73
TTC28-208ENST00000612946 KRT222Q8N1A0 295 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 PLEKHG5O94827 1062 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 PAXBP1Q9Y5B6 917 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 FRAT2O75474 233 aaPredicted RBP10.48□□□□□ -0.73
TTC28-208ENST00000612946 PAIP2Q9BPZ3 127 aaKnown RBP10.48□□□□□ -0.73
TTC28-208ENST00000612946 SMC3Q9UQE7 1217 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 V9GYY5 206 aaPredicted RBP10.48□□□□□ -0.73
TTC28-208ENST00000612946 PLEKHD1A6NEE1 506 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 CCDC144AA2RUR9 1427 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 KIF18AQ8NI77 898 aa10.48□□□□□ -0.73
TTC28-208ENST00000612946 CCDC94Q9BW85 323 aaPredicted RBP10.48□□□□□ -0.73
TTC28-208ENST00000612946 DHX29Q7Z478 1369 aaKnown RBP10.47□□□□□ -0.73
TTC28-208ENST00000612946 CLSTN1O94985 981 aa10.47□□□□□ -0.73
TTC28-208ENST00000612946 RBM10P98175 930 aaKnown RBP10.47□□□□□ -0.73
TTC28-208ENST00000612946 EZRP15311 586 aaKnown RBP10.47□□□□□ -0.73
TTC28-208ENST00000612946 CHMP7Q8WUX9 453 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms