RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 SLC26A8Q96RN1 970 aa39.33■■■■□ 3.89
PNKP-216ENST00000601816 PPP1R15AO75807 674 aaPredicted RBP39.32■■■■□ 3.89
PNKP-216ENST00000601816 PIP4K2BP78356 416 aa39.32■■■■□ 3.89
PNKP-216ENST00000601816 BCANQ96GW7 911 aa39.32■■■■□ 3.89
PNKP-216ENST00000601816 PLEKHG1Q9ULL1 1385 aa39.29■■■■□ 3.88
PNKP-216ENST00000601816 SPHKAPQ2M3C7 1700 aa39.28■■■■□ 3.88
PNKP-216ENST00000601816 ABCF1Q8NE71 845 aaKnown RBP eCLIP39.27■■■■□ 3.88
PNKP-216ENST00000601816 KCNA6P17658 529 aa39.25■■■■□ 3.87
PNKP-216ENST00000601816 ALKQ9UM73 1620 aa39.23■■■■□ 3.87
PNKP-216ENST00000601816 SENP3Q9H4L4 574 aaPredicted RBP39.23■■■■□ 3.87
PNKP-216ENST00000601816 TRIM52Q96A61 297 aa39.21■■■■□ 3.87
PNKP-216ENST00000601816 NUTM2DQ5VT03 806 aaPredicted RBP39.17■■■■□ 3.86
PNKP-216ENST00000601816 NWD1Q149M9 1564 aa39.16■■■■□ 3.86
PNKP-216ENST00000601816 XIRP1Q702N8 1843 aaKnown RBP39.15■■■■□ 3.86
PNKP-216ENST00000601816 TRPM2O94759 1503 aa39.14■■■■□ 3.86
PNKP-216ENST00000601816 NKTRP30414 1462 aaKnown RBP39.14■■■■□ 3.86
PNKP-216ENST00000601816 TMEM94Q12767 1356 aa39.14■■■■□ 3.86
PNKP-216ENST00000601816 HSPA1LP34931 641 aa39.14■■■■□ 3.86
PNKP-216ENST00000601816 DISP3Q9P2K9 1392 aa39.11■■■■□ 3.85
PNKP-216ENST00000601816 PROSER2Q86WR7 435 aaPredicted RBP39.11■■■■□ 3.85
PNKP-216ENST00000601816 TBX22Q9Y458 520 aa39.11■■■■□ 3.85
PNKP-216ENST00000601816 CLTCL1P53675 1640 aa39.1■■■■□ 3.85
PNKP-216ENST00000601816 SLC4A1APQ9BWU0 796 aaKnown RBP39.08■■■■□ 3.85
PNKP-216ENST00000601816 DIP2AQ14689 1571 aa39.08■■■■□ 3.85
PNKP-216ENST00000601816 ADAMTS13Q76LX8 1427 aa39.07■■■■□ 3.85
PNKP-216ENST00000601816 ZNF326Q5BKZ1 582 aaKnown RBP39.06■■■■□ 3.84
PNKP-216ENST00000601816 CHD2O14647 1828 aaKnown RBP39.04■■■■□ 3.84
PNKP-216ENST00000601816 RBM33Q96EV2 1170 aaKnown RBP39.03■■■■□ 3.84
PNKP-216ENST00000601816 PIK3R4Q99570 1358 aa38.99■■■■□ 3.83
PNKP-216ENST00000601816 KIF1BO60333 1816 aa38.96■■■■□ 3.83
PNKP-216ENST00000601816 MSH6P52701 1360 aa38.94■■■■□ 3.82
PNKP-216ENST00000601816 SETBP1Q9Y6X0 1596 aa38.93■■■■□ 3.82
PNKP-216ENST00000601816 NEXMIFQ5QGS0 1516 aa38.93■■■■□ 3.82
PNKP-216ENST00000601816 NRXN3Q9Y4C0 1643 aa38.9■■■■□ 3.82
PNKP-216ENST00000601816 FAM135BQ49AJ0 1406 aa38.88■■■■□ 3.81
PNKP-216ENST00000601816 FOXD1Q16676 465 aa38.86■■■■□ 3.81
PNKP-216ENST00000601816 NCOA3Q9Y6Q9 1424 aa38.86■■■■□ 3.81
PNKP-216ENST00000601816 PTPRUQ92729 1446 aa38.84■■■■□ 3.81
PNKP-216ENST00000601816 MPHOSPH9Q99550 1183 aa38.84■■■■□ 3.81
PNKP-216ENST00000601816 AMOTL2Q9Y2J4 779 aa38.84■■■■□ 3.81
PNKP-216ENST00000601816 SETD5Q9C0A6 1442 aa38.83■■■■□ 3.81
PNKP-216ENST00000601816 C14orf37Q86TY3 774 aa38.82■■■■□ 3.8
PNKP-216ENST00000601816 ACIN1Q9UKV3 1341 aaKnown RBP38.82■■■■□ 3.8
PNKP-216ENST00000601816 MED1Q15648 1581 aaPredicted RBP38.79■■■■□ 3.8
PNKP-216ENST00000601816 VGFO15240 615 aaPredicted RBP38.77■■■■□ 3.8
PNKP-216ENST00000601816 RPGRIP1LQ68CZ1 1315 aa38.77■■■■□ 3.8
PNKP-216ENST00000601816 ROBO1Q9Y6N7 1651 aa38.77■■■■□ 3.8
PNKP-216ENST00000601816 CCDC144AA2RUR9 1427 aa38.76■■■■□ 3.8
PNKP-216ENST00000601816 METP08581 1390 aa38.76■■■■□ 3.8
PNKP-216ENST00000601816 ILDR2Q71H61 639 aa38.76■■■■□ 3.8
PNKP-216ENST00000601816 XRN1Q8IZH2 1706 aaKnown RBP38.76■■■■□ 3.8
PNKP-216ENST00000601816 SLAIN2Q9P270 581 aa38.75■■■■□ 3.79
PNKP-216ENST00000601816 C19orf44Q9H6X5 657 aa38.71■■■■□ 3.79
PNKP-216ENST00000601816 CADPS2Q86UW7 1296 aa38.68■■■■□ 3.78
PNKP-216ENST00000601816 SIPA1L2Q9P2F8 1722 aaPredicted RBP38.68■■■■□ 3.78
PNKP-216ENST00000601816 RAB3GAP2Q9H2M9 1393 aa38.68■■■■□ 3.78
PNKP-216ENST00000601816 PPLO60437 1756 aa38.67■■■■□ 3.78
PNKP-216ENST00000601816 ATF3P18847 181 aa38.67■■■■□ 3.78
PNKP-216ENST00000601816 SPATA31E1Q6ZUB1 1445 aa38.62■■■■□ 3.77
PNKP-216ENST00000601816 SETD1AO15047 1707 aaKnown RBP38.6■■■■□ 3.77
PNKP-216ENST00000601816 DCCP43146 1447 aa38.59■■■■□ 3.77
PNKP-216ENST00000601816 RGL3Q3MIN7 710 aa38.59■■■■□ 3.77
PNKP-216ENST00000601816 PHF23Q9BUL5 403 aaPredicted RBP38.56■■■■□ 3.76
PNKP-216ENST00000601816 PHLPP1O60346 1717 aa38.54■■■■□ 3.76
PNKP-216ENST00000601816 ANKRD30BQ9BXX2 1392 aa38.54■■■■□ 3.76
PNKP-216ENST00000601816 PTCH1Q13635 1447 aa38.52■■■■□ 3.76
PNKP-216ENST00000601816 ADGRL3Q9HAR2 1447 aa38.52■■■■□ 3.76
PNKP-216ENST00000601816 ADGRF5Q8IZF2 1346 aa38.51■■■■□ 3.76
PNKP-216ENST00000601816 IFT172Q9UG01 1749 aa38.49■■■■□ 3.75
PNKP-216ENST00000601816 PRAG1Q86YV5 1406 aa38.47■■■■□ 3.75
PNKP-216ENST00000601816 NALCNQ8IZF0 1738 aa38.46■■■■□ 3.75
PNKP-216ENST00000601816 ROBO2Q9HCK4 1378 aa38.45■■■■□ 3.75
PNKP-216ENST00000601816 SOCS7O14512 581 aa38.45■■■■□ 3.75
PNKP-216ENST00000601816 COL16A1Q07092 1604 aaPredicted RBP38.44■■■■□ 3.74
PNKP-216ENST00000601816 MST1RQ04912 1400 aa38.44■■■■□ 3.74
PNKP-216ENST00000601816 AHDC1Q5TGY3 1603 aaPredicted RBP38.43■■■■□ 3.74
PNKP-216ENST00000601816 BRINP3Q76B58 766 aa38.43■■■■□ 3.74
PNKP-216ENST00000601816 JCADQ9P266 1359 aa38.42■■■■□ 3.74
PNKP-216ENST00000601816 HRCP23327 699 aa38.41■■■■□ 3.74
PNKP-216ENST00000601816 PIK3C2GO75747 1445 aa38.38■■■■□ 3.74
PNKP-216ENST00000601816 ASXL1Q8IXJ9 1541 aa38.38■■■■□ 3.73
PNKP-216ENST00000601816 LRPPRCP42704 1394 aaKnown RBP38.31■■■■□ 3.72
PNKP-216ENST00000601816 MYOM2P54296 1465 aa38.3■■■■□ 3.72
PNKP-216ENST00000601816 STK26Q9P289 416 aa38.29■■■■□ 3.72
PNKP-216ENST00000601816 TECPR2O15040 1411 aa38.28■■■■□ 3.72
PNKP-216ENST00000601816 TMEM132EQ6IEE7 984 aa38.27■■■■□ 3.72
PNKP-216ENST00000601816 C1orf167Q5SNV9 1468 aa38.27■■■■□ 3.72
PNKP-216ENST00000601816 NRXN1Q9ULB1 1477 aa38.27■■■■□ 3.72
PNKP-216ENST00000601816 NHSL1Q5SYE7 1610 aa38.25■■■■□ 3.71
PNKP-216ENST00000601816 RGS17Q9UGC6 210 aaPredicted RBP38.25■■■■□ 3.71
PNKP-216ENST00000601816 ABCC11Q96J66 1382 aa38.24■■■■□ 3.71
PNKP-216ENST00000601816 SPATA31A6Q5VVP1 1343 aa38.23■■■■□ 3.71
PNKP-216ENST00000601816 C14orf93Q9H972 538 aaKnown RBP38.23■■■■□ 3.71
PNKP-216ENST00000601816 KNDC1Q76NI1 1749 aa38.23■■■■□ 3.71
PNKP-216ENST00000601816 SHPRHQ149N8 1683 aa38.22■■■■□ 3.71
PNKP-216ENST00000601816 YTHDC2Q9H6S0 1430 aaKnown RBP38.21■■■■□ 3.71
PNKP-216ENST00000601816 LAMC1P11047 1609 aa38.21■■■■□ 3.71
PNKP-216ENST00000601816 CDC42BPGQ6DT37 1551 aa38.19■■■■□ 3.7
PNKP-216ENST00000601816 CFAP70Q5T0N1 1121 aa38.18■■■■□ 3.7
PNKP-216ENST00000601816 WAPLQ7Z5K2 1190 aa38.18■■■■□ 3.7
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms