RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PANK1Q8TE04 598 aa19.77■□□□□ 0.76
UPF1-204ENST00000596842 NUP160Q12769 1436 aa19.77■□□□□ 0.76
UPF1-204ENST00000596842 CLUAP1Q96AJ1 413 aa19.77■□□□□ 0.75
UPF1-204ENST00000596842 DMRT2Q9Y5R5 561 aa19.77■□□□□ 0.75
UPF1-204ENST00000596842 SPAG9O60271 1321 aaKnown RBP19.76■□□□□ 0.75
UPF1-204ENST00000596842 SAMD9LQ8IVG5 1584 aa19.75■□□□□ 0.75
UPF1-204ENST00000596842 SLKQ9H2G2 1235 aaPredicted RBP19.75■□□□□ 0.75
UPF1-204ENST00000596842 ABCA8O94911 1581 aa19.74■□□□□ 0.75
UPF1-204ENST00000596842 ADCY10Q96PN6 1610 aa19.74■□□□□ 0.75
UPF1-204ENST00000596842 SLFN5Q08AF3 891 aa19.74■□□□□ 0.75
UPF1-204ENST00000596842 FRAT2O75474 233 aaPredicted RBP19.74■□□□□ 0.75
UPF1-204ENST00000596842 NUTM2DQ5VT03 806 aaPredicted RBP19.74■□□□□ 0.75
UPF1-204ENST00000596842 MAGI2Q86UL8 1455 aa19.73■□□□□ 0.75
UPF1-204ENST00000596842 USP35Q9P2H5 1018 aa19.73■□□□□ 0.75
UPF1-204ENST00000596842 SPRYD3Q8NCJ5 442 aa19.73■□□□□ 0.75
UPF1-204ENST00000596842 GSE1Q14687 1217 aa19.72■□□□□ 0.75
UPF1-204ENST00000596842 BLMP54132 1417 aaPredicted RBP19.72■□□□□ 0.75
UPF1-204ENST00000596842 PLEKHG5O94827 1062 aa19.72■□□□□ 0.75
UPF1-204ENST00000596842 TRAK1Q9UPV9 953 aa19.72■□□□□ 0.75
UPF1-204ENST00000596842 TRPM1Q7Z4N2 1603 aa19.71■□□□□ 0.75
UPF1-204ENST00000596842 GPRASP1Q5JY77 1395 aa19.71■□□□□ 0.75
UPF1-204ENST00000596842 C8orf34Q49A92 452 aa19.71■□□□□ 0.75
UPF1-204ENST00000596842 KDM2BQ8NHM5 1336 aa19.7■□□□□ 0.74
UPF1-204ENST00000596842 IGHDP01880 384 aa19.7■□□□□ 0.74
UPF1-204ENST00000596842 SAFB2Q14151 953 aaKnown RBP eCLIP19.7■□□□□ 0.74
UPF1-204ENST00000596842 PODXL2Q9NZ53 605 aa19.69■□□□□ 0.74
UPF1-204ENST00000596842 A0A0U1RQG5 324 aaPredicted RBP19.68■□□□□ 0.74
UPF1-204ENST00000596842 MORC1Q86VD1 984 aa19.68■□□□□ 0.74
UPF1-204ENST00000596842 CENPJQ9HC77 1338 aaPredicted RBP19.67■□□□□ 0.74
UPF1-204ENST00000596842 ZMYM4Q5VZL5 1548 aa19.66■□□□□ 0.74
UPF1-204ENST00000596842 TNNQ9UQP3 1299 aa19.66■□□□□ 0.74
UPF1-204ENST00000596842 E9PSI1 815 aa19.65■□□□□ 0.74
UPF1-204ENST00000596842 E9PCH4 1651 aa19.65■□□□□ 0.74
UPF1-204ENST00000596842 TMEM132EQ6IEE7 984 aa19.65■□□□□ 0.74
UPF1-204ENST00000596842 ADGRF5Q8IZF2 1346 aa19.64■□□□□ 0.74
UPF1-204ENST00000596842 CARD14Q9BXL6 1004 aa19.64■□□□□ 0.73
UPF1-204ENST00000596842 TRAPPC8Q9Y2L5 1435 aa19.64■□□□□ 0.73
UPF1-204ENST00000596842 SEC24BO95487 1268 aa19.64■□□□□ 0.73
UPF1-204ENST00000596842 SLC12A5Q9H2X9 1139 aa19.64■□□□□ 0.73
UPF1-204ENST00000596842 CDC42BPBQ9Y5S2 1711 aa19.63■□□□□ 0.73
UPF1-204ENST00000596842 ARHGEF5Q12774 1597 aa19.63■□□□□ 0.73
UPF1-204ENST00000596842 TTC37Q6PGP7 1564 aa19.63■□□□□ 0.73
UPF1-204ENST00000596842 WDR7Q9Y4E6 1490 aa19.62■□□□□ 0.73
UPF1-204ENST00000596842 PRDM15P57071 1507 aaPredicted RBP19.62■□□□□ 0.73
UPF1-204ENST00000596842 GGT6Q6P531 493 aa19.61■□□□□ 0.73
UPF1-204ENST00000596842 ZNF521Q96K83 1311 aa19.59■□□□□ 0.73
UPF1-204ENST00000596842 WWC1Q8IX03 1113 aa19.59■□□□□ 0.73
UPF1-204ENST00000596842 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP19.59■□□□□ 0.73
UPF1-204ENST00000596842 EIF3AQ14152 1382 aaKnown RBP19.58■□□□□ 0.73
UPF1-204ENST00000596842 TCP11L2Q8N4U5 519 aa19.58■□□□□ 0.72
UPF1-204ENST00000596842 NAP1L5Q96NT1 182 aaPredicted RBP19.58■□□□□ 0.72
UPF1-204ENST00000596842 U2AF1L5P0DN76 240 aaPredicted RBP19.57■□□□□ 0.72
UPF1-204ENST00000596842 U2AF1Q01081 240 aaKnown RBP eCLIP19.57■□□□□ 0.72
UPF1-204ENST00000596842 U2SURPO15042 1029 aaKnown RBP19.57■□□□□ 0.72
UPF1-204ENST00000596842 KANK1Q14678 1352 aa19.57■□□□□ 0.72
UPF1-204ENST00000596842 NKTRP30414 1462 aaKnown RBP19.56■□□□□ 0.72
UPF1-204ENST00000596842 SCAF11Q99590 1463 aaKnown RBP19.56■□□□□ 0.72
UPF1-204ENST00000596842 PREX2Q70Z35 1606 aa19.56■□□□□ 0.72
UPF1-204ENST00000596842 UPF2Q9HAU5 1272 aaKnown RBP19.56■□□□□ 0.72
UPF1-204ENST00000596842 MTHFSP49914 203 aa19.55■□□□□ 0.72
UPF1-204ENST00000596842 ASXL1Q8IXJ9 1541 aa19.55■□□□□ 0.72
UPF1-204ENST00000596842 CGNL1Q0VF96 1302 aa19.54■□□□□ 0.72
UPF1-204ENST00000596842 FTSJ3Q8IY81 847 aaKnown RBP19.54■□□□□ 0.72
UPF1-204ENST00000596842 SCAPERQ9BY12 1400 aa19.54■□□□□ 0.72
UPF1-204ENST00000596842 STK26Q9P289 416 aa19.53■□□□□ 0.72
UPF1-204ENST00000596842 DUOX2Q9NRD8 1548 aa19.53■□□□□ 0.72
UPF1-204ENST00000596842 RLBP1P12271 317 aa19.53■□□□□ 0.72
UPF1-204ENST00000596842 BECN1Q14457 450 aa19.52■□□□□ 0.72
UPF1-204ENST00000596842 GZF1Q9H116 711 aaPredicted RBP19.52■□□□□ 0.72
UPF1-204ENST00000596842 ERCC6L2Q5T890 1561 aa19.52■□□□□ 0.72
UPF1-204ENST00000596842 MYO5CQ9NQX4 1742 aa19.52■□□□□ 0.72
UPF1-204ENST00000596842 EIF2AK4Q9P2K8 1649 aaKnown RBP19.51■□□□□ 0.71
UPF1-204ENST00000596842 TSR2Q969E8 191 aaKnown RBP19.51■□□□□ 0.71
UPF1-204ENST00000596842 POGKQ9P215 609 aa19.51■□□□□ 0.71
UPF1-204ENST00000596842 PCDHB15Q9Y5E8 787 aa19.51■□□□□ 0.71
UPF1-204ENST00000596842 PDZRN3Q9UPQ7 1066 aa19.49■□□□□ 0.71
UPF1-204ENST00000596842 CFAP53Q96M91 514 aa19.49■□□□□ 0.71
UPF1-204ENST00000596842 MAST1Q9Y2H9 1570 aa19.49■□□□□ 0.71
UPF1-204ENST00000596842 MFAP1P55081 439 aaKnown RBP19.48■□□□□ 0.71
UPF1-204ENST00000596842 PLCH2O75038 1416 aa19.48■□□□□ 0.71
UPF1-204ENST00000596842 RARSP54136 660 aaKnown RBP19.48■□□□□ 0.71
UPF1-204ENST00000596842 RUNDC1Q96C34 613 aa19.48■□□□□ 0.71
UPF1-204ENST00000596842 NSD3Q9BZ95 1437 aa19.48■□□□□ 0.71
UPF1-204ENST00000596842 PDE3AQ14432 1141 aa19.48■□□□□ 0.71
UPF1-204ENST00000596842 TRMT2AQ8IZ69 625 aaKnown RBP19.48■□□□□ 0.71
UPF1-204ENST00000596842 UGGT1Q9NYU2 1555 aa19.47■□□□□ 0.71
UPF1-204ENST00000596842 PIK3C2GO75747 1445 aa19.47■□□□□ 0.71
UPF1-204ENST00000596842 CABP2Q9NPB3 220 aa19.46■□□□□ 0.71
UPF1-204ENST00000596842 UNC13BO14795 1591 aa19.46■□□□□ 0.71
UPF1-204ENST00000596842 ATP10AO60312 1499 aa19.46■□□□□ 0.71
UPF1-204ENST00000596842 IQGAP3Q86VI3 1631 aa19.45■□□□□ 0.7
UPF1-204ENST00000596842 MAPK8IP3Q9UPT6 1336 aa19.45■□□□□ 0.7
UPF1-204ENST00000596842 ITPRIPQ8IWB1 547 aa19.45■□□□□ 0.7
UPF1-204ENST00000596842 SMC4Q9NTJ3 1288 aa19.45■□□□□ 0.7
UPF1-204ENST00000596842 PMFBP1Q8TBY8 1022 aa19.44■□□□□ 0.7
UPF1-204ENST00000596842 INSRP06213 1382 aa19.44■□□□□ 0.7
UPF1-204ENST00000596842 SRPK2P78362 688 aaKnown RBP19.43■□□□□ 0.7
UPF1-204ENST00000596842 CFAP65Q6ZU64 1925 aaKnown RBP19.43■□□□□ 0.7
UPF1-204ENST00000596842 GGNBP2Q9H3C7 697 aa19.43■□□□□ 0.7
UPF1-204ENST00000596842 RWDD1Q9H446 243 aaPredicted RBP19.42■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms