RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 RPGRIP1LQ68CZ1 1315 aa20.92■□□□□ 0.94
VRK3-212ENST00000596814 TRPM1Q7Z4N2 1603 aa20.9■□□□□ 0.94
VRK3-212ENST00000596814 RALGAPBQ86X10 1494 aa20.9■□□□□ 0.94
VRK3-212ENST00000596814 SETD1BQ9UPS6 1966 aaKnown RBP20.89■□□□□ 0.93
VRK3-212ENST00000596814 ZNF142P52746 1687 aaPredicted RBP20.88■□□□□ 0.93
VRK3-212ENST00000596814 CEP170BQ9Y4F5 1589 aaPredicted RBP20.88■□□□□ 0.93
VRK3-212ENST00000596814 NRXN1Q9ULB1 1477 aa20.88■□□□□ 0.93
VRK3-212ENST00000596814 RIMS2Q9UQ26 1411 aa20.85■□□□□ 0.93
VRK3-212ENST00000596814 KIAA1210Q9ULL0 1709 aa20.84■□□□□ 0.93
VRK3-212ENST00000596814 ADGRF5Q8IZF2 1346 aa20.84■□□□□ 0.93
VRK3-212ENST00000596814 ZFYVE9O95405 1425 aa20.84■□□□□ 0.93
VRK3-212ENST00000596814 PIK3C2GO75747 1445 aa20.83■□□□□ 0.92
VRK3-212ENST00000596814 KDM4FA0A1W2PPD8 638 aa20.82■□□□□ 0.92
VRK3-212ENST00000596814 VGFO15240 615 aaPredicted RBP20.82■□□□□ 0.92
VRK3-212ENST00000596814 ROCK2O75116 1388 aaKnown RBP20.81■□□□□ 0.92
VRK3-212ENST00000596814 TMEM2Q9UHN6 1383 aa20.81■□□□□ 0.92
VRK3-212ENST00000596814 LAMC1P11047 1609 aa20.8■□□□□ 0.92
VRK3-212ENST00000596814 NUTM2DQ5VT03 806 aaPredicted RBP20.8■□□□□ 0.92
VRK3-212ENST00000596814 SLIT1O75093 1534 aa20.79■□□□□ 0.92
VRK3-212ENST00000596814 ARHGAP23Q9P227 1491 aa20.78■□□□□ 0.92
VRK3-212ENST00000596814 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.78■□□□□ 0.92
VRK3-212ENST00000596814 GPRASP1Q5JY77 1395 aa20.77■□□□□ 0.92
VRK3-212ENST00000596814 THEMISQ8N1K5 641 aaPredicted RBP20.77■□□□□ 0.92
VRK3-212ENST00000596814 HDGFP51858 240 aaKnown RBP20.76■□□□□ 0.91
VRK3-212ENST00000596814 CARD11Q9BXL7 1154 aa20.75■□□□□ 0.91
VRK3-212ENST00000596814 SETBP1Q9Y6X0 1596 aa20.74■□□□□ 0.91
VRK3-212ENST00000596814 NBPF1Q3BBV0 1214 aa20.74■□□□□ 0.91
VRK3-212ENST00000596814 CFAP70Q5T0N1 1121 aa20.73■□□□□ 0.91
VRK3-212ENST00000596814 USP47Q96K76 1375 aa20.72■□□□□ 0.91
VRK3-212ENST00000596814 EIF4G2P78344 907 aaKnown RBP eCLIP20.72■□□□□ 0.911e-6■■■■■ 27.9
VRK3-212ENST00000596814 C14orf93Q9H972 538 aaKnown RBP20.72■□□□□ 0.91
VRK3-212ENST00000596814 IQGAP1P46940 1657 aa20.72■□□□□ 0.91
VRK3-212ENST00000596814 NRXN3Q9Y4C0 1643 aa20.72■□□□□ 0.91
VRK3-212ENST00000596814 EID1Q9Y6B2 187 aa20.71■□□□□ 0.91
VRK3-212ENST00000596814 ZNF316A6NFI3 1004 aaPredicted RBP20.7■□□□□ 0.9
VRK3-212ENST00000596814 SCAF11Q99590 1463 aaKnown RBP20.7■□□□□ 0.9
VRK3-212ENST00000596814 ALKQ9UM73 1620 aa20.7■□□□□ 0.9
VRK3-212ENST00000596814 ADGRB1O14514 1584 aa20.7■□□□□ 0.9
VRK3-212ENST00000596814 SETD1AO15047 1707 aaKnown RBP20.69■□□□□ 0.9
VRK3-212ENST00000596814 PLEKHG1Q9ULL1 1385 aa20.68■□□□□ 0.9
VRK3-212ENST00000596814 HSPA5P11021 654 aaKnown RBP20.68■□□□□ 0.9
VRK3-212ENST00000596814 LTKP29376 864 aa20.68■□□□□ 0.9
VRK3-212ENST00000596814 TXNDC2Q86VQ3 553 aa20.68■□□□□ 0.9
VRK3-212ENST00000596814 ASXL1Q8IXJ9 1541 aa20.67■□□□□ 0.9
VRK3-212ENST00000596814 SENP3Q9H4L4 574 aaPredicted RBP20.67■□□□□ 0.9
VRK3-212ENST00000596814 POLR1AO95602 1720 aaPredicted RBP20.65■□□□□ 0.9
VRK3-212ENST00000596814 HIRIP3Q9BW71 556 aaPredicted RBP20.64■□□□□ 0.9
VRK3-212ENST00000596814 BCANQ96GW7 911 aa20.62■□□□□ 0.89
VRK3-212ENST00000596814 DIP2AQ14689 1571 aa20.62■□□□□ 0.89
VRK3-212ENST00000596814 EIF3AQ14152 1382 aaKnown RBP20.62■□□□□ 0.89
VRK3-212ENST00000596814 TMEM132EQ6IEE7 984 aa20.61■□□□□ 0.89
VRK3-212ENST00000596814 ANKLE2Q86XL3 938 aa20.61■□□□□ 0.89
VRK3-212ENST00000596814 ADAMTS13Q76LX8 1427 aa20.61■□□□□ 0.89
VRK3-212ENST00000596814 LMTK3Q96Q04 1460 aa20.6■□□□□ 0.89
VRK3-212ENST00000596814 ARHGEF28Q8N1W1 1705 aaKnown RBP20.59■□□□□ 0.89
VRK3-212ENST00000596814 YTHDC2Q9H6S0 1430 aaKnown RBP20.58■□□□□ 0.89
VRK3-212ENST00000596814 MED14O60244 1454 aa20.58■□□□□ 0.88
VRK3-212ENST00000596814 ST20-MTHFSA0A0A6YYL1 179 aa20.58■□□□□ 0.88
VRK3-212ENST00000596814 METP08581 1390 aa20.55■□□□□ 0.88
VRK3-212ENST00000596814 KNDC1Q76NI1 1749 aa20.55■□□□□ 0.88
VRK3-212ENST00000596814 TRAK1Q9UPV9 953 aa20.55■□□□□ 0.88
VRK3-212ENST00000596814 NPHP4O75161 1426 aaPredicted RBP20.54■□□□□ 0.88
VRK3-212ENST00000596814 LRPPRCP42704 1394 aaKnown RBP20.54■□□□□ 0.88
VRK3-212ENST00000596814 QRICH2Q9H0J4 1663 aa20.53■□□□□ 0.88
VRK3-212ENST00000596814 SLC26A8Q96RN1 970 aa20.53■□□□□ 0.88
VRK3-212ENST00000596814 DLC1Q96QB1 1528 aa20.52■□□□□ 0.88
VRK3-212ENST00000596814 STK26Q9P289 416 aa20.52■□□□□ 0.88
VRK3-212ENST00000596814 TBX22Q9Y458 520 aa20.52■□□□□ 0.88
VRK3-212ENST00000596814 NCKAP5LQ9HCH0 1330 aa20.51■□□□□ 0.87
VRK3-212ENST00000596814 HSPA2P54652 639 aa20.5■□□□□ 0.87
VRK3-212ENST00000596814 CENPJQ9HC77 1338 aaPredicted RBP20.5■□□□□ 0.87
VRK3-212ENST00000596814 CPS1P31327 1500 aa20.5■□□□□ 0.87
VRK3-212ENST00000596814 TECPR2O15040 1411 aa20.49■□□□□ 0.87
VRK3-212ENST00000596814 ABCC11Q96J66 1382 aa20.49■□□□□ 0.87
VRK3-212ENST00000596814 TESK2Q96S53 571 aa20.49■□□□□ 0.87
VRK3-212ENST00000596814 PIK3R4Q99570 1358 aa20.48■□□□□ 0.87
VRK3-212ENST00000596814 SBNO2Q9Y2G9 1366 aa20.47■□□□□ 0.87
VRK3-212ENST00000596814 CCDC7Q96M83 1385 aa20.47■□□□□ 0.87
VRK3-212ENST00000596814 XRN1Q8IZH2 1706 aaKnown RBP20.46■□□□□ 0.87
VRK3-212ENST00000596814 WASHC2AQ641Q2 1341 aa20.46■□□□□ 0.87
VRK3-212ENST00000596814 PTPRUQ92729 1446 aa20.46■□□□□ 0.87
VRK3-212ENST00000596814 C11orf95C9JLR9 678 aaPredicted RBP20.46■□□□□ 0.87
VRK3-212ENST00000596814 STRCQ7RTU9 1775 aa20.45■□□□□ 0.86
VRK3-212ENST00000596814 CHD2O14647 1828 aaKnown RBP20.44■□□□□ 0.86
VRK3-212ENST00000596814 KIF7Q2M1P5 1343 aa20.44■□□□□ 0.86
VRK3-212ENST00000596814 DISP3Q9P2K9 1392 aa20.44■□□□□ 0.86
VRK3-212ENST00000596814 TMF1P82094 1093 aa20.44■□□□□ 0.86
VRK3-212ENST00000596814 PRAM1Q96QH2 718 aa20.44■□□□□ 0.86
VRK3-212ENST00000596814 FAM135BQ49AJ0 1406 aa20.44■□□□□ 0.86
VRK3-212ENST00000596814 SLC24A1O60721 1099 aa20.43■□□□□ 0.86
VRK3-212ENST00000596814 POGKQ9P215 609 aa20.43■□□□□ 0.86
VRK3-212ENST00000596814 PTCH1Q13635 1447 aa20.42■□□□□ 0.86
VRK3-212ENST00000596814 SIRT1Q96EB6 747 aa20.41■□□□□ 0.86
VRK3-212ENST00000596814 AMOTL2Q9Y2J4 779 aa20.41■□□□□ 0.86
VRK3-212ENST00000596814 ROBO2Q9HCK4 1378 aa20.4■□□□□ 0.86
VRK3-212ENST00000596814 PLEKHH1Q9ULM0 1364 aa20.4■□□□□ 0.86
VRK3-212ENST00000596814 SAFB2Q14151 953 aaKnown RBP eCLIP20.39■□□□□ 0.86
VRK3-212ENST00000596814 NWD1Q149M9 1564 aa20.39■□□□□ 0.85
VRK3-212ENST00000596814 TULP4Q9NRJ4 1543 aa20.38■□□□□ 0.85
VRK3-212ENST00000596814 WAPLQ7Z5K2 1190 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms