RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CHD2O14647 1828 aaKnown RBP19.9■□□□□ 0.78
LIG1-212ENST00000596549 TRPM2O94759 1503 aa19.89■□□□□ 0.77
LIG1-212ENST00000596549 RIMS2Q9UQ26 1411 aa19.88■□□□□ 0.77
LIG1-212ENST00000596549 NRXN3Q9Y4C0 1643 aa19.87■□□□□ 0.77
LIG1-212ENST00000596549 KIF1BO60333 1816 aa19.86■□□□□ 0.77
LIG1-212ENST00000596549 DIP2AQ14689 1571 aa19.85■□□□□ 0.77
LIG1-212ENST00000596549 PLEKHG1Q9ULL1 1385 aa19.84■□□□□ 0.77
LIG1-212ENST00000596549 NKTRP30414 1462 aaKnown RBP19.84■□□□□ 0.77
LIG1-212ENST00000596549 SOCS7O14512 581 aa19.81■□□□□ 0.76
LIG1-212ENST00000596549 ADAMTS13Q76LX8 1427 aa19.8■□□□□ 0.76
LIG1-212ENST00000596549 SLC26A8Q96RN1 970 aa19.8■□□□□ 0.76
LIG1-212ENST00000596549 NEXMIFQ5QGS0 1516 aa19.8■□□□□ 0.76
LIG1-212ENST00000596549 SETBP1Q9Y6X0 1596 aa19.78■□□□□ 0.76
LIG1-212ENST00000596549 TOM1O60784 492 aa19.77■□□□□ 0.76
LIG1-212ENST00000596549 CHGAP10645 457 aaKnown RBP19.77■□□□□ 0.76
LIG1-212ENST00000596549 SETD1AO15047 1707 aaKnown RBP19.76■□□□□ 0.75
LIG1-212ENST00000596549 XRN1Q8IZH2 1706 aaKnown RBP19.76■□□□□ 0.75
LIG1-212ENST00000596549 PIP4K2BP78356 416 aa19.76■□□□□ 0.75
LIG1-212ENST00000596549 ILDR2Q71H61 639 aa19.76■□□□□ 0.75
LIG1-212ENST00000596549 SENP3Q9H4L4 574 aaPredicted RBP19.76■□□□□ 0.75
LIG1-212ENST00000596549 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
LIG1-212ENST00000596549 TMEM94Q12767 1356 aa19.75■□□□□ 0.75
LIG1-212ENST00000596549 PPLO60437 1756 aa19.75■□□□□ 0.75
LIG1-212ENST00000596549 KCNA6P17658 529 aa19.74■□□□□ 0.75
LIG1-212ENST00000596549 ROBO1Q9Y6N7 1651 aa19.74■□□□□ 0.75
LIG1-212ENST00000596549 PPP1R15AO75807 674 aaPredicted RBP19.73■□□□□ 0.75
LIG1-212ENST00000596549 NUTM2DQ5VT03 806 aaPredicted RBP19.73■□□□□ 0.75
LIG1-212ENST00000596549 MED1Q15648 1581 aaPredicted RBP19.73■□□□□ 0.75
LIG1-212ENST00000596549 HSPA1LP34931 641 aa19.72■□□□□ 0.75
LIG1-212ENST00000596549 IFT172Q9UG01 1749 aa19.71■□□□□ 0.75
LIG1-212ENST00000596549 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.7■□□□□ 0.74
LIG1-212ENST00000596549 DISP3Q9P2K9 1392 aa19.7■□□□□ 0.74
LIG1-212ENST00000596549 SIPA1L2Q9P2F8 1722 aaPredicted RBP19.69■□□□□ 0.74
LIG1-212ENST00000596549 BCANQ96GW7 911 aa19.69■□□□□ 0.74
LIG1-212ENST00000596549 PTPRUQ92729 1446 aa19.68■□□□□ 0.74
LIG1-212ENST00000596549 HDGFP51858 240 aaKnown RBP19.68■□□□□ 0.74
LIG1-212ENST00000596549 RBM33Q96EV2 1170 aaKnown RBP19.68■□□□□ 0.74
LIG1-212ENST00000596549 TRIM52Q96A61 297 aa19.67■□□□□ 0.74
LIG1-212ENST00000596549 TBX22Q9Y458 520 aa19.67■□□□□ 0.74
LIG1-212ENST00000596549 PIK3R4Q99570 1358 aa19.67■□□□□ 0.74
LIG1-212ENST00000596549 NALCNQ8IZF0 1738 aa19.65■□□□□ 0.74
LIG1-212ENST00000596549 PROSER2Q86WR7 435 aaPredicted RBP19.64■□□□□ 0.73
LIG1-212ENST00000596549 SLC4A1APQ9BWU0 796 aaKnown RBP19.64■□□□□ 0.73
LIG1-212ENST00000596549 FAM135BQ49AJ0 1406 aa19.61■□□□□ 0.73
LIG1-212ENST00000596549 MSH6P52701 1360 aa19.61■□□□□ 0.73
LIG1-212ENST00000596549 ZNF326Q5BKZ1 582 aaKnown RBP19.61■□□□□ 0.73
LIG1-212ENST00000596549 PHLPP1O60346 1717 aa19.61■□□□□ 0.73
LIG1-212ENST00000596549 NCOA3Q9Y6Q9 1424 aa19.6■□□□□ 0.73
LIG1-212ENST00000596549 METP08581 1390 aa19.59■□□□□ 0.73
LIG1-212ENST00000596549 FOXD1Q16676 465 aa19.59■□□□□ 0.73
LIG1-212ENST00000596549 SETD5Q9C0A6 1442 aa19.59■□□□□ 0.73
LIG1-212ENST00000596549 COL16A1Q07092 1604 aaPredicted RBP19.58■□□□□ 0.72
LIG1-212ENST00000596549 CCDC144AA2RUR9 1427 aa19.56■□□□□ 0.72
LIG1-212ENST00000596549 SPATA31E1Q6ZUB1 1445 aa19.56■□□□□ 0.72
LIG1-212ENST00000596549 RAB3GAP2Q9H2M9 1393 aa19.55■□□□□ 0.72
LIG1-212ENST00000596549 MPHOSPH9Q99550 1183 aa19.54■□□□□ 0.72
LIG1-212ENST00000596549 AMOTL2Q9Y2J4 779 aa19.54■□□□□ 0.72
LIG1-212ENST00000596549 PRAG1Q86YV5 1406 aa19.53■□□□□ 0.72
LIG1-212ENST00000596549 ASXL1Q8IXJ9 1541 aa19.53■□□□□ 0.72
LIG1-212ENST00000596549 AHDC1Q5TGY3 1603 aaPredicted RBP19.53■□□□□ 0.72
LIG1-212ENST00000596549 DCCP43146 1447 aa19.52■□□□□ 0.72
LIG1-212ENST00000596549 KNDC1Q76NI1 1749 aa19.52■□□□□ 0.72
LIG1-212ENST00000596549 NHSL1Q5SYE7 1610 aa19.51■□□□□ 0.71
LIG1-212ENST00000596549 PTCH1Q13635 1447 aa19.51■□□□□ 0.71
LIG1-212ENST00000596549 ADGRL3Q9HAR2 1447 aa19.49■□□□□ 0.71
LIG1-212ENST00000596549 SHPRHQ149N8 1683 aa19.48■□□□□ 0.71
LIG1-212ENST00000596549 RPGRIP1LQ68CZ1 1315 aa19.48■□□□□ 0.71
LIG1-212ENST00000596549 SLAIN2Q9P270 581 aa19.47■□□□□ 0.71
LIG1-212ENST00000596549 MST1RQ04912 1400 aa19.47■□□□□ 0.71
LIG1-212ENST00000596549 LAMC1P11047 1609 aa19.47■□□□□ 0.71
LIG1-212ENST00000596549 C14orf37Q86TY3 774 aa19.46■□□□□ 0.71
LIG1-212ENST00000596549 PIK3C2GO75747 1445 aa19.45■□□□□ 0.7
LIG1-212ENST00000596549 VGFO15240 615 aaPredicted RBP19.45■□□□□ 0.7
LIG1-212ENST00000596549 C19orf44Q9H6X5 657 aa19.45■□□□□ 0.7
LIG1-212ENST00000596549 ADGRF5Q8IZF2 1346 aa19.44■□□□□ 0.7
LIG1-212ENST00000596549 ROBO2Q9HCK4 1378 aa19.44■□□□□ 0.7
LIG1-212ENST00000596549 MYOM2P54296 1465 aa19.43■□□□□ 0.7
LIG1-212ENST00000596549 CADPS2Q86UW7 1296 aa19.43■□□□□ 0.7
LIG1-212ENST00000596549 NRXN1Q9ULB1 1477 aa19.42■□□□□ 0.7
LIG1-212ENST00000596549 ACIN1Q9UKV3 1341 aaKnown RBP19.42■□□□□ 0.7
LIG1-212ENST00000596549 CDC42BPGQ6DT37 1551 aa19.41■□□□□ 0.7
LIG1-212ENST00000596549 ANKRD30BQ9BXX2 1392 aa19.41■□□□□ 0.7
LIG1-212ENST00000596549 ATF3P18847 181 aa19.4■□□□□ 0.7
LIG1-212ENST00000596549 RGL3Q3MIN7 710 aa19.39■□□□□ 0.69
LIG1-212ENST00000596549 TECPR2O15040 1411 aa19.39■□□□□ 0.69
LIG1-212ENST00000596549 LRP6O75581 1613 aa19.38■□□□□ 0.69
LIG1-212ENST00000596549 BRINP3Q76B58 766 aa19.37■□□□□ 0.69
LIG1-212ENST00000596549 JCADQ9P266 1359 aa19.36■□□□□ 0.69
LIG1-212ENST00000596549 FMN2Q9NZ56 1722 aa19.35■□□□□ 0.69
LIG1-212ENST00000596549 PHF23Q9BUL5 403 aaPredicted RBP19.35■□□□□ 0.69
LIG1-212ENST00000596549 C1orf167Q5SNV9 1468 aa19.35■□□□□ 0.69
LIG1-212ENST00000596549 LRPPRCP42704 1394 aaKnown RBP19.32■□□□□ 0.68
LIG1-212ENST00000596549 RGS17Q9UGC6 210 aaPredicted RBP19.32■□□□□ 0.68
LIG1-212ENST00000596549 ADGRB1O14514 1584 aa19.32■□□□□ 0.68
LIG1-212ENST00000596549 YTHDC2Q9H6S0 1430 aaKnown RBP19.31■□□□□ 0.68
LIG1-212ENST00000596549 RGPD8O14715 1765 aaPredicted RBP19.3■□□□□ 0.68
LIG1-212ENST00000596549 PLEKHH1Q9ULM0 1364 aa19.29■□□□□ 0.68
LIG1-212ENST00000596549 HRCP23327 699 aa19.28■□□□□ 0.68
LIG1-212ENST00000596549 ABCC11Q96J66 1382 aa19.28■□□□□ 0.68
LIG1-212ENST00000596549 TMEM132EQ6IEE7 984 aa19.27■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms