RNA–Protein interactions for RNA: ENST00000592927.5

DDX39A-219, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-219ENST00000592927 SLIT1O75093 1534 aa17.68■□□□□ 0.42
DDX39A-219ENST00000592927 SLC26A8Q96RN1 970 aa17.68■□□□□ 0.42
DDX39A-219ENST00000592927 MSH6P52701 1360 aa17.67■□□□□ 0.42
DDX39A-219ENST00000592927 UBR1Q8IWV7 1749 aa17.67■□□□□ 0.42
DDX39A-219ENST00000592927 CDK12Q9NYV4 1490 aaPredicted RBP17.67■□□□□ 0.42
DDX39A-219ENST00000592927 GCC2Q8IWJ2 1684 aa17.66■□□□□ 0.42
DDX39A-219ENST00000592927 ABCC3O15438 1527 aa17.66■□□□□ 0.42
DDX39A-219ENST00000592927 KANK1Q14678 1352 aa17.66■□□□□ 0.42
DDX39A-219ENST00000592927 SETD5Q9C0A6 1442 aa17.65■□□□□ 0.42
DDX39A-219ENST00000592927 ZRANB1Q9UGI0 708 aa17.64■□□□□ 0.41
DDX39A-219ENST00000592927 PRDM15P57071 1507 aaPredicted RBP17.63■□□□□ 0.41
DDX39A-219ENST00000592927 NUTM2BA6NNL0 878 aaPredicted RBP17.63■□□□□ 0.41
DDX39A-219ENST00000592927 NUTM2EB1AL46 878 aaPredicted RBP17.63■□□□□ 0.41
DDX39A-219ENST00000592927 NUTM2DQ5VT03 806 aaPredicted RBP17.63■□□□□ 0.41
DDX39A-219ENST00000592927 NUTM2AQ8IVF1 878 aaPredicted RBP17.63■□□□□ 0.41
DDX39A-219ENST00000592927 TMEM2Q9UHN6 1383 aa17.63■□□□□ 0.41
DDX39A-219ENST00000592927 COL16A1Q07092 1604 aaPredicted RBP17.62■□□□□ 0.41
DDX39A-219ENST00000592927 STAG3Q9UJ98 1225 aa17.62■□□□□ 0.41
DDX39A-219ENST00000592927 MROH1Q8NDA8 1641 aa17.61■□□□□ 0.41
DDX39A-219ENST00000592927 AFF2P51816 1311 aa17.61■□□□□ 0.41
DDX39A-219ENST00000592927 NUP155O75694 1391 aa17.61■□□□□ 0.41
DDX39A-219ENST00000592927 UNC13BO14795 1591 aa17.59■□□□□ 0.41
DDX39A-219ENST00000592927 RAB3GAP2Q9H2M9 1393 aa17.59■□□□□ 0.41
DDX39A-219ENST00000592927 ACIN1Q9UKV3 1341 aaKnown RBP17.59■□□□□ 0.41
DDX39A-219ENST00000592927 FOXD1Q16676 465 aa17.58■□□□□ 0.4
DDX39A-219ENST00000592927 RGS12O14924 1447 aa17.57■□□□□ 0.4
DDX39A-219ENST00000592927 RBM6P78332 1123 aaKnown RBP17.57■□□□□ 0.4
DDX39A-219ENST00000592927 BCANQ96GW7 911 aa17.57■□□□□ 0.4
DDX39A-219ENST00000592927 QTRT2Q9H974 415 aaKnown RBP17.57■□□□□ 0.4
DDX39A-219ENST00000592927 NKTRP30414 1462 aaKnown RBP17.56■□□□□ 0.4
DDX39A-219ENST00000592927 HRCP23327 699 aa17.55■□□□□ 0.4
DDX39A-219ENST00000592927 TET3O43151 1660 aa17.55■□□□□ 0.4
DDX39A-219ENST00000592927 LMTK2Q8IWU2 1503 aa17.54■□□□□ 0.4
DDX39A-219ENST00000592927 SETBP1Q9Y6X0 1596 aa17.53■□□□□ 0.4
DDX39A-219ENST00000592927 CEP152O94986 1710 aa17.52■□□□□ 0.4
DDX39A-219ENST00000592927 IQGAP3Q86VI3 1631 aa17.52■□□□□ 0.4
DDX39A-219ENST00000592927 C14orf37Q86TY3 774 aa17.52■□□□□ 0.4
DDX39A-219ENST00000592927 IDI1Q13907 227 aa17.51■□□□□ 0.39
DDX39A-219ENST00000592927 NWD1Q149M9 1564 aa17.51■□□□□ 0.39
DDX39A-219ENST00000592927 C8orf37Q96NL8 207 aa17.51■□□□□ 0.39
DDX39A-219ENST00000592927 SLC4A1APQ9BWU0 796 aaKnown RBP17.51■□□□□ 0.39
DDX39A-219ENST00000592927 ATAD2Q6PL18 1390 aa17.51■□□□□ 0.39
DDX39A-219ENST00000592927 ARHGAP31Q2M1Z3 1444 aa17.5■□□□□ 0.39
DDX39A-219ENST00000592927 SHPRHQ149N8 1683 aa17.5■□□□□ 0.39
DDX39A-219ENST00000592927 PIK3C2BO00750 1634 aa17.5■□□□□ 0.39
DDX39A-219ENST00000592927 CFAP65Q6ZU64 1925 aaKnown RBP17.49■□□□□ 0.39
DDX39A-219ENST00000592927 EFCAB6Q5THR3 1501 aa17.49■□□□□ 0.39
DDX39A-219ENST00000592927 CADPS2Q86UW7 1296 aa17.49■□□□□ 0.39
DDX39A-219ENST00000592927 AHDC1Q5TGY3 1603 aaPredicted RBP17.48■□□□□ 0.39
DDX39A-219ENST00000592927 ATF3P18847 181 aa17.48■□□□□ 0.39
DDX39A-219ENST00000592927 NGLY1Q96IV0 654 aa17.47■□□□□ 0.39
DDX39A-219ENST00000592927 MPHOSPH9Q99550 1183 aa17.47■□□□□ 0.39
DDX39A-219ENST00000592927 RPRD2Q5VT52 1461 aaKnown RBP17.46■□□□□ 0.39
DDX39A-219ENST00000592927 BRINP3Q76B58 766 aa17.46■□□□□ 0.39
DDX39A-219ENST00000592927 C19orf44Q9H6X5 657 aa17.46■□□□□ 0.39
DDX39A-219ENST00000592927 KDM5AP29375 1690 aaKnown RBP17.45■□□□□ 0.38
DDX39A-219ENST00000592927 NCOA3Q9Y6Q9 1424 aa17.45■□□□□ 0.38
DDX39A-219ENST00000592927 DIP2AQ14689 1571 aa17.44■□□□□ 0.38
DDX39A-219ENST00000592927 CCER1Q8TC90 406 aaPredicted RBP17.42■□□□□ 0.38
DDX39A-219ENST00000592927 ZEB1P37275 1124 aaPredicted RBP17.41■□□□□ 0.38
DDX39A-219ENST00000592927 E9PCH4 1651 aa17.41■□□□□ 0.38
DDX39A-219ENST00000592927 CCDC125Q86Z20 511 aa17.4■□□□□ 0.38
DDX39A-219ENST00000592927 LRRC59Q96AG4 307 aaKnown RBP17.4■□□□□ 0.38
DDX39A-219ENST00000592927 NOS1P29475 1434 aa17.39■□□□□ 0.38
DDX39A-219ENST00000592927 ADAMTS2O95450 1211 aa17.39■□□□□ 0.37
DDX39A-219ENST00000592927 TBX22Q9Y458 520 aa17.38■□□□□ 0.37
DDX39A-219ENST00000592927 PPP1R15AO75807 674 aaPredicted RBP17.37■□□□□ 0.37
DDX39A-219ENST00000592927 SLC52A1Q9NWF4 448 aa17.37■□□□□ 0.37
DDX39A-219ENST00000592927 CLSPNQ9HAW4 1339 aa17.37■□□□□ 0.37
DDX39A-219ENST00000592927 PLEKHG1Q9ULL1 1385 aa17.37■□□□□ 0.37
DDX39A-219ENST00000592927 USP21Q9UK80 565 aa17.36■□□□□ 0.37
DDX39A-219ENST00000592927 DHX57Q6P158 1386 aaKnown RBP17.36■□□□□ 0.37
DDX39A-219ENST00000592927 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.35■□□□□ 0.37
DDX39A-219ENST00000592927 CHD2O14647 1828 aaKnown RBP17.34■□□□□ 0.37
DDX39A-219ENST00000592927 HDGFP51858 240 aaKnown RBP17.34■□□□□ 0.37
DDX39A-219ENST00000592927 PNPLA6Q8IY17 1366 aa17.34■□□□□ 0.37
DDX39A-219ENST00000592927 DDX17Q92841 729 aaKnown RBP17.34■□□□□ 0.37
DDX39A-219ENST00000592927 TRPC5Q9UL62 973 aaPredicted RBP17.34■□□□□ 0.37
DDX39A-219ENST00000592927 ADGRB3O60242 1522 aa17.32■□□□□ 0.36
DDX39A-219ENST00000592927 SPHKAPQ2M3C7 1700 aa17.32■□□□□ 0.36
DDX39A-219ENST00000592927 TRPM2O94759 1503 aa17.31■□□□□ 0.36
DDX39A-219ENST00000592927 ASXL1Q8IXJ9 1541 aa17.31■□□□□ 0.36
DDX39A-219ENST00000592927 ZFYVE9O95405 1425 aa17.31■□□□□ 0.36
DDX39A-219ENST00000592927 RIMS2Q9UQ26 1411 aa17.3■□□□□ 0.36
DDX39A-219ENST00000592927 CHGAP10645 457 aaKnown RBP17.29■□□□□ 0.36
DDX39A-219ENST00000592927 AMOTL2Q9Y2J4 779 aa17.29■□□□□ 0.36
DDX39A-219ENST00000592927 ANKRD30BQ9BXX2 1392 aa17.28■□□□□ 0.36
DDX39A-219ENST00000592927 FNBP4Q8N3X1 1017 aaPredicted RBP17.28■□□□□ 0.36
DDX39A-219ENST00000592927 CCDC144AA2RUR9 1427 aa17.28■□□□□ 0.36
DDX39A-219ENST00000592927 DEFB132Q7Z7B7 95 aa17.27■□□□□ 0.36
DDX39A-219ENST00000592927 EP400Q96L91 3159 aa17.26■□□□□ 0.35
DDX39A-219ENST00000592927 ATRNO75882 1429 aa17.25■□□□□ 0.35
DDX39A-219ENST00000592927 MST1RQ04912 1400 aa17.25■□□□□ 0.35
DDX39A-219ENST00000592927 ADAMTS13Q76LX8 1427 aa17.25■□□□□ 0.35
DDX39A-219ENST00000592927 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.25■□□□□ 0.35
DDX39A-219ENST00000592927 PIK3R4Q99570 1358 aa17.25■□□□□ 0.35
DDX39A-219ENST00000592927 CLTCL1P53675 1640 aa17.25■□□□□ 0.35
DDX39A-219ENST00000592927 DCCP43146 1447 aa17.24■□□□□ 0.35
DDX39A-219ENST00000592927 BLMP54132 1417 aaPredicted RBP17.22■□□□□ 0.35
DDX39A-219ENST00000592927 NHSL1Q5SYE7 1610 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms