RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 DMRT2Q9Y5R5 561 aa31.55■■■□□ 2.64
ATG4D-209ENST00000588857 TRPM1Q7Z4N2 1603 aa31.54■■■□□ 2.64
ATG4D-209ENST00000588857 MYOM2P54296 1465 aa31.53■■■□□ 2.64
ATG4D-209ENST00000588857 STAG3Q9UJ98 1225 aa31.53■■■□□ 2.64
ATG4D-209ENST00000588857 MYO3AQ8NEV4 1616 aa31.52■■■□□ 2.64
ATG4D-209ENST00000588857 A2ML1A8K2U0 1454 aa31.5■■■□□ 2.63
ATG4D-209ENST00000588857 CEP170BQ9Y4F5 1589 aaPredicted RBP31.5■■■□□ 2.63
ATG4D-209ENST00000588857 NEXMIFQ5QGS0 1516 aa31.46■■■□□ 2.63
ATG4D-209ENST00000588857 EIF4G2P78344 907 aaKnown RBP eCLIP31.46■■■□□ 2.63
ATG4D-209ENST00000588857 STRCQ7RTU9 1775 aa31.45■■■□□ 2.63
ATG4D-209ENST00000588857 ROCK2O75116 1388 aaKnown RBP31.45■■■□□ 2.63
ATG4D-209ENST00000588857 ZNF142P52746 1687 aaPredicted RBP31.45■■■□□ 2.63
ATG4D-209ENST00000588857 NLRP1Q9C000 1473 aa31.45■■■□□ 2.62
ATG4D-209ENST00000588857 KDM5AP29375 1690 aaKnown RBP31.44■■■□□ 2.62
ATG4D-209ENST00000588857 CARD11Q9BXL7 1154 aa31.43■■■□□ 2.62
ATG4D-209ENST00000588857 KIAA1210Q9ULL0 1709 aa31.43■■■□□ 2.62
ATG4D-209ENST00000588857 ADGRF5Q8IZF2 1346 aa31.42■■■□□ 2.62
ATG4D-209ENST00000588857 NCKAP5LQ9HCH0 1330 aa31.42■■■□□ 2.62
ATG4D-209ENST00000588857 NRXN1Q9ULB1 1477 aa31.41■■■□□ 2.62
ATG4D-209ENST00000588857 VGFO15240 615 aaPredicted RBP31.41■■■□□ 2.62
ATG4D-209ENST00000588857 THEMISQ8N1K5 641 aaPredicted RBP31.4■■■□□ 2.62
ATG4D-209ENST00000588857 HSPA5P11021 654 aaKnown RBP31.39■■■□□ 2.62
ATG4D-209ENST00000588857 HIRIP3Q9BW71 556 aaPredicted RBP31.39■■■□□ 2.61
ATG4D-209ENST00000588857 LAMC1P11047 1609 aa31.38■■■□□ 2.61
ATG4D-209ENST00000588857 UBR1Q8IWV7 1749 aa31.38■■■□□ 2.61
ATG4D-209ENST00000588857 NBPF1Q3BBV0 1214 aa31.37■■■□□ 2.61
ATG4D-209ENST00000588857 GPRASP1Q5JY77 1395 aa31.36■■■□□ 2.61
ATG4D-209ENST00000588857 ZFYVE9O95405 1425 aa31.36■■■□□ 2.61
ATG4D-209ENST00000588857 USP47Q96K76 1375 aa31.35■■■□□ 2.61
ATG4D-209ENST00000588857 NUTM2DQ5VT03 806 aaPredicted RBP31.34■■■□□ 2.61
ATG4D-209ENST00000588857 PIK3C2GO75747 1445 aa31.33■■■□□ 2.61
ATG4D-209ENST00000588857 RIMS2Q9UQ26 1411 aa31.3■■■□□ 2.6
ATG4D-209ENST00000588857 CFAP70Q5T0N1 1121 aa31.29■■■□□ 2.6
ATG4D-209ENST00000588857 ANKLE2Q86XL3 938 aa31.29■■■□□ 2.6
ATG4D-209ENST00000588857 HDGFP51858 240 aaKnown RBP31.27■■■□□ 2.6
ATG4D-209ENST00000588857 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.26■■■□□ 2.6
ATG4D-209ENST00000588857 C14orf93Q9H972 538 aaKnown RBP31.26■■■□□ 2.59
ATG4D-209ENST00000588857 ILDR1Q86SU0 546 aaPredicted RBP31.24■■■□□ 2.59
ATG4D-209ENST00000588857 TMEM2Q9UHN6 1383 aa31.23■■■□□ 2.59
ATG4D-209ENST00000588857 SETBP1Q9Y6X0 1596 aa31.23■■■□□ 2.59
ATG4D-209ENST00000588857 CERKQ8TCT0 537 aa31.23■■■□□ 2.59
ATG4D-209ENST00000588857 IQGAP1P46940 1657 aa31.23■■■□□ 2.59
ATG4D-209ENST00000588857 DIEXFQ68CQ4 756 aaKnown RBP31.19■■■□□ 2.58
ATG4D-209ENST00000588857 SCAF11Q99590 1463 aaKnown RBP31.19■■■□□ 2.58
ATG4D-209ENST00000588857 ST20-MTHFSA0A0A6YYL1 179 aa31.17■■■□□ 2.58
ATG4D-209ENST00000588857 POLR1AO95602 1720 aaPredicted RBP31.17■■■□□ 2.58
ATG4D-209ENST00000588857 FBXO41Q8TF61 875 aa31.16■■■□□ 2.58
ATG4D-209ENST00000588857 SLIT1O75093 1534 aa31.15■■■□□ 2.58
ATG4D-209ENST00000588857 EIF3AQ14152 1382 aaKnown RBP31.14■■■□□ 2.58
ATG4D-209ENST00000588857 ADGRB1O14514 1584 aa31.13■■■□□ 2.57
ATG4D-209ENST00000588857 SENP3Q9H4L4 574 aaPredicted RBP31.13■■■□□ 2.57
ATG4D-209ENST00000588857 MED14O60244 1454 aa31.13■■■□□ 2.57
ATG4D-209ENST00000588857 EID1Q9Y6B2 187 aa31.13■■■□□ 2.57
ATG4D-209ENST00000588857 ALKQ9UM73 1620 aa31.12■■■□□ 2.57
ATG4D-209ENST00000588857 ZNF335Q9H4Z2 1342 aaPredicted RBP31.12■■■□□ 2.57
ATG4D-209ENST00000588857 ARHGAP23Q9P227 1491 aa31.12■■■□□ 2.57
ATG4D-209ENST00000588857 LTKP29376 864 aa31.11■■■□□ 2.57
ATG4D-209ENST00000588857 TXNDC2Q86VQ3 553 aa31.11■■■□□ 2.57
ATG4D-209ENST00000588857 NPHP4O75161 1426 aaPredicted RBP31.11■■■□□ 2.57
ATG4D-209ENST00000588857 TMEM132EQ6IEE7 984 aa31.09■■■□□ 2.57
ATG4D-209ENST00000588857 LTBP4Q8N2S1 1624 aa31.09■■■□□ 2.57
ATG4D-209ENST00000588857 NRXN3Q9Y4C0 1643 aa31.07■■■□□ 2.56
ATG4D-209ENST00000588857 WASHC2AQ641Q2 1341 aa31.07■■■□□ 2.56
ATG4D-209ENST00000588857 BCANQ96GW7 911 aa31.06■■■□□ 2.56
ATG4D-209ENST00000588857 CCDC7Q96M83 1385 aa31.05■■■□□ 2.56
ATG4D-209ENST00000588857 C11orf95C9JLR9 678 aaPredicted RBP31.05■■■□□ 2.56
ATG4D-209ENST00000588857 SETD1AO15047 1707 aaKnown RBP31.04■■■□□ 2.56
ATG4D-209ENST00000588857 PLEKHG1Q9ULL1 1385 aa31.04■■■□□ 2.56
ATG4D-209ENST00000588857 ASXL1Q8IXJ9 1541 aa31.03■■■□□ 2.56
ATG4D-209ENST00000588857 DDX10Q13206 875 aaKnown RBP31.03■■■□□ 2.56
ATG4D-209ENST00000588857 TRAK1Q9UPV9 953 aa31.02■■■□□ 2.56
ATG4D-209ENST00000588857 KIF7Q2M1P5 1343 aa31.01■■■□□ 2.55
ATG4D-209ENST00000588857 TESK2Q96S53 571 aa31■■■□□ 2.55
ATG4D-209ENST00000588857 ARHGEF28Q8N1W1 1705 aaKnown RBP30.98■■■□□ 2.55
ATG4D-209ENST00000588857 YTHDC2Q9H6S0 1430 aaKnown RBP30.97■■■□□ 2.55
ATG4D-209ENST00000588857 TMF1P82094 1093 aa30.96■■■□□ 2.55
ATG4D-209ENST00000588857 STK26Q9P289 416 aa30.96■■■□□ 2.55
ATG4D-209ENST00000588857 CENPJQ9HC77 1338 aaPredicted RBP30.95■■■□□ 2.54
ATG4D-209ENST00000588857 SLC24A1O60721 1099 aa30.95■■■□□ 2.54
ATG4D-209ENST00000588857 QRICH2Q9H0J4 1663 aa30.94■■■□□ 2.54
ATG4D-209ENST00000588857 POLR3GLQ9BT43 218 aa30.93■■■□□ 2.54
ATG4D-209ENST00000588857 ADAMTS13Q76LX8 1427 aa30.93■■■□□ 2.54
ATG4D-209ENST00000588857 IQSEC2Q5JU85 1478 aa30.92■■■□□ 2.54
ATG4D-209ENST00000588857 METP08581 1390 aa30.9■■■□□ 2.54
ATG4D-209ENST00000588857 LRPPRCP42704 1394 aaKnown RBP30.9■■■□□ 2.54
ATG4D-209ENST00000588857 DISP3Q9P2K9 1392 aa30.89■■■□□ 2.54
ATG4D-209ENST00000588857 DIP2AQ14689 1571 aa30.89■■■□□ 2.53
ATG4D-209ENST00000588857 SBNO2Q9Y2G9 1366 aa30.88■■■□□ 2.53
ATG4D-209ENST00000588857 CDCA8Q53HL2 280 aa30.87■■■□□ 2.53
ATG4D-209ENST00000588857 CPS1P31327 1500 aa30.86■■■□□ 2.53
ATG4D-209ENST00000588857 SLC26A8Q96RN1 970 aa30.86■■■□□ 2.53
ATG4D-209ENST00000588857 TBX22Q9Y458 520 aa30.85■■■□□ 2.53
ATG4D-209ENST00000588857 KNDC1Q76NI1 1749 aa30.85■■■□□ 2.53
ATG4D-209ENST00000588857 DLC1Q96QB1 1528 aa30.85■■■□□ 2.53
ATG4D-209ENST00000588857 ABCC11Q96J66 1382 aa30.84■■■□□ 2.53
ATG4D-209ENST00000588857 POGKQ9P215 609 aa30.83■■■□□ 2.53
ATG4D-209ENST00000588857 PRAM1Q96QH2 718 aa30.81■■■□□ 2.52
ATG4D-209ENST00000588857 SAFB2Q14151 953 aaKnown RBP eCLIP30.77■■■□□ 2.52
ATG4D-209ENST00000588857 TECPR2O15040 1411 aa30.77■■■□□ 2.52
ATG4D-209ENST00000588857 UBAP1LF5GYI3 381 aa30.75■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms