RNA–Protein interactions for RNA: ENST00000572365.1

SF3B3-214, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-214ENST00000572365 PTPREP23469 700 aa10.11□□□□□ -0.79
SF3B3-214ENST00000572365 RBM46Q8TBY0 533 aaKnown RBP10.1□□□□□ -0.79
SF3B3-214ENST00000572365 FAM198AQ9UFP1 575 aa10.1□□□□□ -0.79
SF3B3-214ENST00000572365 WIZO95785 1651 aa10.09□□□□□ -0.79
SF3B3-214ENST00000572365 SSTR3P32745 418 aaPredicted RBP10.09□□□□□ -0.79
SF3B3-214ENST00000572365 FAM217BQ9NTX9 383 aaPredicted RBP10.09□□□□□ -0.79
SF3B3-214ENST00000572365 CHD1O14646 1710 aa10.08□□□□□ -0.8
SF3B3-214ENST00000572365 TSKSQ9UJT2 592 aa10.08□□□□□ -0.8
SF3B3-214ENST00000572365 NLRP7Q8WX94 980 aa10.07□□□□□ -0.8
SF3B3-214ENST00000572365 EYA1Q99502 592 aa10.07□□□□□ -0.8
SF3B3-214ENST00000572365 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.05□□□□□ -0.8
SF3B3-214ENST00000572365 TRIM6-TRIM34B2RNG4 842 aa10.05□□□□□ -0.8
SF3B3-214ENST00000572365 ONECUT3O60422 494 aaPredicted RBP10.04□□□□□ -0.8
SF3B3-214ENST00000572365 BEGAINQ9BUH8 593 aa10.04□□□□□ -0.8
SF3B3-214ENST00000572365 SH3D19Q5HYK7 790 aa10.03□□□□□ -0.8
SF3B3-214ENST00000572365 KCNK17Q96T54 332 aa10.03□□□□□ -0.8
SF3B3-214ENST00000572365 AQRO60306 1485 aaKnown RBP eCLIP10.03□□□□□ -0.85e-7■■■■□ 22.4
SF3B3-214ENST00000572365 RCCD1A6NED2 376 aa10.02□□□□□ -0.81
SF3B3-214ENST00000572365 NBPF26B4DH59 902 aa10.02□□□□□ -0.81
SF3B3-214ENST00000572365 C3orf80F5H4A9 247 aa10.02□□□□□ -0.81
SF3B3-214ENST00000572365 PACS2Q86VP3 889 aa10.02□□□□□ -0.81
SF3B3-214ENST00000572365 NUDT18Q6ZVK8 323 aa10.01□□□□□ -0.81
SF3B3-214ENST00000572365 TATDN2Q93075 761 aa10.01□□□□□ -0.81
SF3B3-214ENST00000572365 RSPH6AQ9H0K4 717 aa10.01□□□□□ -0.81
SF3B3-214ENST00000572365 KCNH8Q96L42 1107 aa10□□□□□ -0.81
SF3B3-214ENST00000572365 PCMTD1Q96MG8 357 aaPredicted RBP10□□□□□ -0.81
SF3B3-214ENST00000572365 DNAJB2P25686 324 aa9.99□□□□□ -0.81
SF3B3-214ENST00000572365 SKIV2LQ15477 1246 aaKnown RBP9.99□□□□□ -0.81
SF3B3-214ENST00000572365 PROX2Q3B8N5 592 aa9.99□□□□□ -0.81
SF3B3-214ENST00000572365 ZBED2Q9BTP6 218 aa9.99□□□□□ -0.81
SF3B3-214ENST00000572365 CFTRP13569 1480 aa9.98□□□□□ -0.81
SF3B3-214ENST00000572365 PNMA3Q9UL41 463 aa9.98□□□□□ -0.81
SF3B3-214ENST00000572365 ERBB3P21860 1342 aa9.98□□□□□ -0.81
SF3B3-214ENST00000572365 EIF4G3O43432 1585 aaKnown RBP9.97□□□□□ -0.81
SF3B3-214ENST00000572365 VARS2Q5ST30 1063 aaKnown RBP9.97□□□□□ -0.81
SF3B3-214ENST00000572365 TMEM134Q9H6X4 195 aa9.97□□□□□ -0.81
SF3B3-214ENST00000572365 IFT140Q96RY7 1462 aa9.97□□□□□ -0.81
SF3B3-214ENST00000572365 ARHGAP33O14559 1287 aa9.96□□□□□ -0.82
SF3B3-214ENST00000572365 ST18O60284 1047 aa9.96□□□□□ -0.82
SF3B3-214ENST00000572365 PSEN2P49810 448 aa9.96□□□□□ -0.82
SF3B3-214ENST00000572365 SLC4A5Q9BY07 1137 aa9.96□□□□□ -0.82
SF3B3-214ENST00000572365 DIXDC1Q155Q3 683 aa9.95□□□□□ -0.82
SF3B3-214ENST00000572365 MYSM1Q5VVJ2 828 aa9.95□□□□□ -0.82
SF3B3-214ENST00000572365 POTEEQ6S8J3 1075 aa9.95□□□□□ -0.82
SF3B3-214ENST00000572365 SULF1Q8IWU6 871 aa9.95□□□□□ -0.82
SF3B3-214ENST00000572365 CD46P15529 392 aa9.94□□□□□ -0.82
SF3B3-214ENST00000572365 KIAA1468Q9P260 1216 aa9.94□□□□□ -0.82
SF3B3-214ENST00000572365 SMAPO00193 183 aa9.93□□□□□ -0.82
SF3B3-214ENST00000572365 PBX2P40425 430 aa9.93□□□□□ -0.82
SF3B3-214ENST00000572365 CDAN1Q8IWY9 1227 aa9.93□□□□□ -0.82
SF3B3-214ENST00000572365 TBC1D2Q9BYX2 928 aa9.93□□□□□ -0.82
SF3B3-214ENST00000572365 RABGEF1Q9UJ41 708 aa9.93□□□□□ -0.82
SF3B3-214ENST00000572365 EMP3P54852 163 aa9.92□□□□□ -0.82
SF3B3-214ENST00000572365 FLIIQ13045 1269 aa9.91□□□□□ -0.82
SF3B3-214ENST00000572365 PROCA1Q8NCQ7 364 aaPredicted RBP9.91□□□□□ -0.82
SF3B3-214ENST00000572365 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.91□□□□□ -0.82
SF3B3-214ENST00000572365 POLR3EQ9NVU0 708 aa9.91□□□□□ -0.82
SF3B3-214ENST00000572365 TOPBP1Q92547 1522 aa9.91□□□□□ -0.82
SF3B3-214ENST00000572365 RSF1Q96T23 1441 aaPredicted RBP9.9□□□□□ -0.82
SF3B3-214ENST00000572365 DDX11L8A8MPP1 907 aa9.9□□□□□ -0.82
SF3B3-214ENST00000572365 DMRTA1Q5VZB9 504 aa9.9□□□□□ -0.82
SF3B3-214ENST00000572365 ZNF687Q8N1G0 1237 aa9.9□□□□□ -0.82
SF3B3-214ENST00000572365 CHMP7Q8WUX9 453 aaPredicted RBP9.9□□□□□ -0.82
SF3B3-214ENST00000572365 MARVELD3Q96A59 401 aa9.9□□□□□ -0.82
SF3B3-214ENST00000572365 TDRD9Q8NDG6 1382 aaKnown RBP9.89□□□□□ -0.83
SF3B3-214ENST00000572365 CLK2P49760 499 aaKnown RBP9.89□□□□□ -0.83
SF3B3-214ENST00000572365 SPIRE2Q8WWL2 714 aa9.89□□□□□ -0.83
SF3B3-214ENST00000572365 ZMYND15Q9H091 742 aa9.89□□□□□ -0.83
SF3B3-214ENST00000572365 AXIN2Q9Y2T1 843 aa9.89□□□□□ -0.83
SF3B3-214ENST00000572365 VPS9D1Q9Y2B5 631 aa9.88□□□□□ -0.83
SF3B3-214ENST00000572365 RAD54L2Q9Y4B4 1467 aa9.86□□□□□ -0.83
SF3B3-214ENST00000572365 FAM205CA6NFA0 338 aa9.86□□□□□ -0.83
SF3B3-214ENST00000572365 TUSC1Q2TAM9 212 aa9.86□□□□□ -0.83
SF3B3-214ENST00000572365 SPTLC1O15269 473 aa9.85□□□□□ -0.83
SF3B3-214ENST00000572365 GJA5P36382 358 aa9.85□□□□□ -0.83
SF3B3-214ENST00000572365 FAM98CQ17RN3 349 aaKnown RBP9.85□□□□□ -0.83
SF3B3-214ENST00000572365 RIC3Q7Z5B4 369 aa9.85□□□□□ -0.83
SF3B3-214ENST00000572365 NUTM1Q86Y26 1132 aa9.85□□□□□ -0.83
SF3B3-214ENST00000572365 LIMD1Q9UGP4 676 aa9.85□□□□□ -0.83
SF3B3-214ENST00000572365 SEPT9Q9UHD8 586 aaPredicted RBP9.85□□□□□ -0.83
SF3B3-214ENST00000572365 TARBP1Q13395 1621 aaKnown RBP9.85□□□□□ -0.83
SF3B3-214ENST00000572365 PRDM2Q13029 1718 aa9.85□□□□□ -0.83
SF3B3-214ENST00000572365 RSPH4AQ5TD94 716 aa9.84□□□□□ -0.83
SF3B3-214ENST00000572365 RDH13Q8NBN7 331 aa9.84□□□□□ -0.83
SF3B3-214ENST00000572365 GAPVD1Q14C86 1478 aa9.84□□□□□ -0.83
SF3B3-214ENST00000572365 SWT1Q5T5J6 900 aaKnown RBP9.83□□□□□ -0.84
SF3B3-214ENST00000572365 RSBN1LQ6PCB5 846 aaPredicted RBP9.83□□□□□ -0.84
SF3B3-214ENST00000572365 LAPTM4BQ86VI4 370 aa9.83□□□□□ -0.84
SF3B3-214ENST00000572365 CLASP1Q7Z460 1538 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 POTEB3A0JP26 581 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 BHMG1C9JSJ3 638 aaPredicted RBP9.82□□□□□ -0.84
SF3B3-214ENST00000572365 TK2O00142 265 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 GCGRP47871 477 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 MCM6Q14566 821 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 PPP2R2DQ66LE6 453 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 POTEBQ6S5H4 581 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 HS3ST6Q96QI5 342 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 ATP1B4Q9UN42 357 aaPredicted RBP9.82□□□□□ -0.84
SF3B3-214ENST00000572365 SNAPC4Q5SXM2 1469 aa9.82□□□□□ -0.84
SF3B3-214ENST00000572365 ERCC6L2Q5T890 1561 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 107.6 ms