RNA–Protein interactions for RNA: ENST00000568569.1

GTF3C1-209, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-209ENST00000568569 BCANQ96GW7 911 aa18.5■□□□□ 0.55
GTF3C1-209ENST00000568569 CHIC2Q9UKJ5 165 aa18.5■□□□□ 0.55
GTF3C1-209ENST00000568569 JCADQ9P266 1359 aa18.47■□□□□ 0.55
GTF3C1-209ENST00000568569 SLAIN2Q9P270 581 aa18.47■□□□□ 0.55
GTF3C1-209ENST00000568569 RPRD2Q5VT52 1461 aaKnown RBP18.46■□□□□ 0.54
GTF3C1-209ENST00000568569 PLEKHG1Q9ULL1 1385 aa18.45■□□□□ 0.54
GTF3C1-209ENST00000568569 ZFYVE9O95405 1425 aa18.44■□□□□ 0.54
GTF3C1-209ENST00000568569 PPP1R15AO75807 674 aaPredicted RBP18.43■□□□□ 0.54
GTF3C1-209ENST00000568569 HDGFP51858 240 aaKnown RBP18.43■□□□□ 0.54
GTF3C1-209ENST00000568569 ADGRL2O95490 1459 aa18.43■□□□□ 0.54
GTF3C1-209ENST00000568569 RIMS2Q9UQ26 1411 aa18.41■□□□□ 0.54
GTF3C1-209ENST00000568569 NCOA3Q9Y6Q9 1424 aa18.4■□□□□ 0.54
GTF3C1-209ENST00000568569 ANKRD50Q9ULJ7 1429 aa18.4■□□□□ 0.54
GTF3C1-209ENST00000568569 PHLPP1O60346 1717 aa18.39■□□□□ 0.53
GTF3C1-209ENST00000568569 TBX22Q9Y458 520 aa18.38■□□□□ 0.53
GTF3C1-209ENST00000568569 SPATA31A6Q5VVP1 1343 aa18.38■□□□□ 0.53
GTF3C1-209ENST00000568569 C14orf37Q86TY3 774 aa18.37■□□□□ 0.53
GTF3C1-209ENST00000568569 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.37■□□□□ 0.53
GTF3C1-209ENST00000568569 COL16A1Q07092 1604 aaPredicted RBP18.37■□□□□ 0.53
GTF3C1-209ENST00000568569 MEX3CQ5U5Q3 659 aaKnown RBP18.35■□□□□ 0.53
GTF3C1-209ENST00000568569 CADPS2Q86UW7 1296 aa18.35■□□□□ 0.53
GTF3C1-209ENST00000568569 FAM50AQ14320 339 aaKnown RBP18.34■□□□□ 0.53
GTF3C1-209ENST00000568569 ZNF772Q68DY9 489 aaPredicted RBP18.34■□□□□ 0.53
GTF3C1-209ENST00000568569 CHD2O14647 1828 aaKnown RBP18.34■□□□□ 0.53
GTF3C1-209ENST00000568569 SETD1AO15047 1707 aaKnown RBP18.34■□□□□ 0.53
GTF3C1-209ENST00000568569 TMEM131LA2VDJ0 1609 aa18.34■□□□□ 0.53
GTF3C1-209ENST00000568569 LRP6O75581 1613 aa18.34■□□□□ 0.53
GTF3C1-209ENST00000568569 PIK3R4Q99570 1358 aa18.33■□□□□ 0.53
GTF3C1-209ENST00000568569 CHGAP10645 457 aaKnown RBP18.33■□□□□ 0.52
GTF3C1-209ENST00000568569 ATF3P18847 181 aa18.33■□□□□ 0.52
GTF3C1-209ENST00000568569 C19orf44Q9H6X5 657 aa18.33■□□□□ 0.52
GTF3C1-209ENST00000568569 ADAMTS13Q76LX8 1427 aa18.32■□□□□ 0.52
GTF3C1-209ENST00000568569 GCC2Q8IWJ2 1684 aa18.32■□□□□ 0.52
GTF3C1-209ENST00000568569 DIP2AQ14689 1571 aa18.31■□□□□ 0.52
GTF3C1-209ENST00000568569 AHDC1Q5TGY3 1603 aaPredicted RBP18.31■□□□□ 0.52
GTF3C1-209ENST00000568569 NUTM2DQ5VT03 806 aaPredicted RBP18.29■□□□□ 0.52
GTF3C1-209ENST00000568569 UPF1Q92900 1129 aaKnown RBP eCLIP18.28■□□□□ 0.52
GTF3C1-209ENST00000568569 TRIM52Q96A61 297 aa18.28■□□□□ 0.52
GTF3C1-209ENST00000568569 MYO5BQ9ULV0 1848 aa18.28■□□□□ 0.52
GTF3C1-209ENST00000568569 UNC13BO14795 1591 aa18.26■□□□□ 0.51
GTF3C1-209ENST00000568569 BRINP3Q76B58 766 aa18.26■□□□□ 0.51
GTF3C1-209ENST00000568569 AMOTL2Q9Y2J4 779 aa18.26■□□□□ 0.51
GTF3C1-209ENST00000568569 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.26■□□□□ 0.51
GTF3C1-209ENST00000568569 DCCP43146 1447 aa18.25■□□□□ 0.51
GTF3C1-209ENST00000568569 TRPM2O94759 1503 aa18.25■□□□□ 0.51
GTF3C1-209ENST00000568569 SHPRHQ149N8 1683 aa18.25■□□□□ 0.51
GTF3C1-209ENST00000568569 RXRBP28702 533 aa18.24■□□□□ 0.51
GTF3C1-209ENST00000568569 PTPRUQ92729 1446 aa18.23■□□□□ 0.51
GTF3C1-209ENST00000568569 ROCK1Q13464 1354 aa18.22■□□□□ 0.51
GTF3C1-209ENST00000568569 E9PCH4 1651 aa18.22■□□□□ 0.51
GTF3C1-209ENST00000568569 CDK12Q9NYV4 1490 aaPredicted RBP18.21■□□□□ 0.51
GTF3C1-209ENST00000568569 NUTM2BA6NNL0 878 aaPredicted RBP18.21■□□□□ 0.51
GTF3C1-209ENST00000568569 NUTM2EB1AL46 878 aaPredicted RBP18.21■□□□□ 0.51
GTF3C1-209ENST00000568569 NUTM2AQ8IVF1 878 aaPredicted RBP18.21■□□□□ 0.51
GTF3C1-209ENST00000568569 SRCAPQ6ZRS2 3230 aa18.21■□□□□ 0.51
GTF3C1-209ENST00000568569 ASXL1Q8IXJ9 1541 aa18.2■□□□□ 0.5
GTF3C1-209ENST00000568569 SETD5Q9C0A6 1442 aa18.2■□□□□ 0.5
GTF3C1-209ENST00000568569 IQGAP3Q86VI3 1631 aa18.19■□□□□ 0.5
GTF3C1-209ENST00000568569 NUP155O75694 1391 aa18.18■□□□□ 0.5
GTF3C1-209ENST00000568569 AFF2P51816 1311 aa18.18■□□□□ 0.5
GTF3C1-209ENST00000568569 MST1RQ04912 1400 aa18.17■□□□□ 0.5
GTF3C1-209ENST00000568569 LRRC59Q96AG4 307 aaKnown RBP18.16■□□□□ 0.5
GTF3C1-209ENST00000568569 SETBP1Q9Y6X0 1596 aa18.16■□□□□ 0.5
GTF3C1-209ENST00000568569 XRN1Q8IZH2 1706 aaKnown RBP18.15■□□□□ 0.5
GTF3C1-209ENST00000568569 METP08581 1390 aa18.13■□□□□ 0.49
GTF3C1-209ENST00000568569 NRXN3Q9Y4C0 1643 aa18.12■□□□□ 0.49
GTF3C1-209ENST00000568569 ZNF326Q5BKZ1 582 aaKnown RBP18.12■□□□□ 0.49
GTF3C1-209ENST00000568569 C8orf37Q96NL8 207 aa18.12■□□□□ 0.49
GTF3C1-209ENST00000568569 ADGRL3Q9HAR2 1447 aa18.12■□□□□ 0.49
GTF3C1-209ENST00000568569 RBM6P78332 1123 aaKnown RBP18.11■□□□□ 0.49
GTF3C1-209ENST00000568569 PNPLA6Q8IY17 1366 aa18.11■□□□□ 0.49
GTF3C1-209ENST00000568569 NHSL1Q5SYE7 1610 aa18.11■□□□□ 0.49
GTF3C1-209ENST00000568569 RGS12O14924 1447 aa18.1■□□□□ 0.49
GTF3C1-209ENST00000568569 DDX17Q92841 729 aaKnown RBP18.09■□□□□ 0.49
GTF3C1-209ENST00000568569 QTRT2Q9H974 415 aaKnown RBP18.09■□□□□ 0.49
GTF3C1-209ENST00000568569 ITGAEP38570 1179 aa18.07■□□□□ 0.48
GTF3C1-209ENST00000568569 SPHKAPQ2M3C7 1700 aa18.04■□□□□ 0.48
GTF3C1-209ENST00000568569 C1orf167Q5SNV9 1468 aa18.04■□□□□ 0.48
GTF3C1-209ENST00000568569 ADAMTS2O95450 1211 aa18.04■□□□□ 0.48
GTF3C1-209ENST00000568569 NGLY1Q96IV0 654 aa18.04■□□□□ 0.48
GTF3C1-209ENST00000568569 PTCH1Q13635 1447 aa18.03■□□□□ 0.48
GTF3C1-209ENST00000568569 NEXMIFQ5QGS0 1516 aa18.03■□□□□ 0.48
GTF3C1-209ENST00000568569 SOS2Q07890 1332 aaPredicted RBP18.01■□□□□ 0.47
GTF3C1-209ENST00000568569 NALCNQ8IZF0 1738 aa18.01■□□□□ 0.47
GTF3C1-209ENST00000568569 ATAD2Q6PL18 1390 aa18.01■□□□□ 0.47
GTF3C1-209ENST00000568569 USP21Q9UK80 565 aa17.99■□□□□ 0.47
GTF3C1-209ENST00000568569 TRPC5Q9UL62 973 aaPredicted RBP17.99■□□□□ 0.47
GTF3C1-209ENST00000568569 CLTCL1P53675 1640 aa17.98■□□□□ 0.47
GTF3C1-209ENST00000568569 ORAI2Q96SN7 254 aa17.98■□□□□ 0.47
GTF3C1-209ENST00000568569 ROBO2Q9HCK4 1378 aa17.98■□□□□ 0.47
GTF3C1-209ENST00000568569 LAMC1P11047 1609 aa17.98■□□□□ 0.47
GTF3C1-209ENST00000568569 EP400Q96L91 3159 aa17.97■□□□□ 0.47
GTF3C1-209ENST00000568569 VGFO15240 615 aaPredicted RBP17.97■□□□□ 0.47
GTF3C1-209ENST00000568569 FNBP4Q8N3X1 1017 aaPredicted RBP17.97■□□□□ 0.47
GTF3C1-209ENST00000568569 PRAG1Q86YV5 1406 aa17.97■□□□□ 0.47
GTF3C1-209ENST00000568569 FOXD1Q16676 465 aa17.95■□□□□ 0.46
GTF3C1-209ENST00000568569 HFM1A2PYH4 1435 aa17.94■□□□□ 0.46
GTF3C1-209ENST00000568569 ATRNO75882 1429 aa17.93■□□□□ 0.46
GTF3C1-209ENST00000568569 NPHP3Q7Z494 1330 aa17.92■□□□□ 0.46
GTF3C1-209ENST00000568569 MYOM2P54296 1465 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms