RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 A2ML1A8K2U0 1454 aa26.59■■□□□ 1.85
COMMD4-213ENST00000565834 NRXN1Q9ULB1 1477 aa26.56■■□□□ 1.84
COMMD4-213ENST00000565834 UBR1Q8IWV7 1749 aa26.56■■□□□ 1.84
COMMD4-213ENST00000565834 ADGRF5Q8IZF2 1346 aa26.54■■□□□ 1.84
COMMD4-213ENST00000565834 KIAA1210Q9ULL0 1709 aa26.54■■□□□ 1.84
COMMD4-213ENST00000565834 MYO3AQ8NEV4 1616 aa26.54■■□□□ 1.84
COMMD4-213ENST00000565834 ROCK2O75116 1388 aaKnown RBP26.54■■□□□ 1.84
COMMD4-213ENST00000565834 VGFO15240 615 aaPredicted RBP26.52■■□□□ 1.84
COMMD4-213ENST00000565834 ZFYVE9O95405 1425 aa26.51■■□□□ 1.83
COMMD4-213ENST00000565834 LAMC1P11047 1609 aa26.51■■□□□ 1.83
COMMD4-213ENST00000565834 EIF4G2P78344 907 aaKnown RBP eCLIP26.5■■□□□ 1.83
COMMD4-213ENST00000565834 CARD11Q9BXL7 1154 aa26.5■■□□□ 1.83
COMMD4-213ENST00000565834 PTPRMP28827 1452 aa26.5■■□□□ 1.83
COMMD4-213ENST00000565834 PIK3C2GO75747 1445 aa26.49■■□□□ 1.83
COMMD4-213ENST00000565834 SETD1BQ9UPS6 1966 aaKnown RBP26.49■■□□□ 1.83
COMMD4-213ENST00000565834 GPRASP1Q5JY77 1395 aa26.49■■□□□ 1.83
COMMD4-213ENST00000565834 NBPF1Q3BBV0 1214 aa26.47■■□□□ 1.83
COMMD4-213ENST00000565834 NUTM2DQ5VT03 806 aaPredicted RBP26.47■■□□□ 1.83
COMMD4-213ENST00000565834 RIMS2Q9UQ26 1411 aa26.47■■□□□ 1.83
COMMD4-213ENST00000565834 HSPA5P11021 654 aaKnown RBP26.47■■□□□ 1.83
COMMD4-213ENST00000565834 USP47Q96K76 1375 aa26.45■■□□□ 1.83
COMMD4-213ENST00000565834 HIRIP3Q9BW71 556 aaPredicted RBP26.44■■□□□ 1.82
COMMD4-213ENST00000565834 CEP170BQ9Y4F5 1589 aaPredicted RBP26.44■■□□□ 1.82
COMMD4-213ENST00000565834 ZNF142P52746 1687 aaPredicted RBP26.43■■□□□ 1.82
COMMD4-213ENST00000565834 CFAP70Q5T0N1 1121 aa26.42■■□□□ 1.82
COMMD4-213ENST00000565834 TMEM2Q9UHN6 1383 aa26.42■■□□□ 1.82
COMMD4-213ENST00000565834 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.41■■□□□ 1.82
COMMD4-213ENST00000565834 HDGFP51858 240 aaKnown RBP26.4■■□□□ 1.82
COMMD4-213ENST00000565834 SETBP1Q9Y6X0 1596 aa26.4■■□□□ 1.82
COMMD4-213ENST00000565834 C14orf93Q9H972 538 aaKnown RBP26.39■■□□□ 1.82
COMMD4-213ENST00000565834 IQGAP1P46940 1657 aa26.39■■□□□ 1.81
COMMD4-213ENST00000565834 SLIT1O75093 1534 aa26.37■■□□□ 1.81
COMMD4-213ENST00000565834 THEMISQ8N1K5 641 aaPredicted RBP26.36■■□□□ 1.81
COMMD4-213ENST00000565834 ARHGAP23Q9P227 1491 aa26.35■■□□□ 1.81
COMMD4-213ENST00000565834 SCAF11Q99590 1463 aaKnown RBP26.34■■□□□ 1.81
COMMD4-213ENST00000565834 ADGRB1O14514 1584 aa26.33■■□□□ 1.81
COMMD4-213ENST00000565834 ALKQ9UM73 1620 aa26.31■■□□□ 1.8
COMMD4-213ENST00000565834 KDM4FA0A1W2PPD8 638 aa26.31■■□□□ 1.8
COMMD4-213ENST00000565834 SENP3Q9H4L4 574 aaPredicted RBP26.3■■□□□ 1.8
COMMD4-213ENST00000565834 EID1Q9Y6B2 187 aa26.3■■□□□ 1.8
COMMD4-213ENST00000565834 NRXN3Q9Y4C0 1643 aa26.3■■□□□ 1.8
COMMD4-213ENST00000565834 ST20-MTHFSA0A0A6YYL1 179 aa26.29■■□□□ 1.8
COMMD4-213ENST00000565834 POLR1AO95602 1720 aaPredicted RBP26.29■■□□□ 1.8
COMMD4-213ENST00000565834 TXNDC2Q86VQ3 553 aa26.28■■□□□ 1.8
COMMD4-213ENST00000565834 EIF3AQ14152 1382 aaKnown RBP26.28■■□□□ 1.8
COMMD4-213ENST00000565834 SETD1AO15047 1707 aaKnown RBP26.27■■□□□ 1.8
COMMD4-213ENST00000565834 LTKP29376 864 aa26.27■■□□□ 1.8
COMMD4-213ENST00000565834 ASXL1Q8IXJ9 1541 aa26.26■■□□□ 1.8
COMMD4-213ENST00000565834 PLEKHG1Q9ULL1 1385 aa26.26■■□□□ 1.79
COMMD4-213ENST00000565834 TMEM132EQ6IEE7 984 aa26.25■■□□□ 1.79
COMMD4-213ENST00000565834 BCANQ96GW7 911 aa26.22■■□□□ 1.79
COMMD4-213ENST00000565834 DIEXFQ68CQ4 756 aaKnown RBP26.2■■□□□ 1.78
COMMD4-213ENST00000565834 ARHGEF28Q8N1W1 1705 aaKnown RBP26.19■■□□□ 1.78
COMMD4-213ENST00000565834 WASHC2AQ641Q2 1341 aa26.19■■□□□ 1.78
COMMD4-213ENST00000565834 TRAK1Q9UPV9 953 aa26.19■■□□□ 1.78
COMMD4-213ENST00000565834 YTHDC2Q9H6S0 1430 aaKnown RBP26.18■■□□□ 1.78
COMMD4-213ENST00000565834 C11orf95C9JLR9 678 aaPredicted RBP26.18■■□□□ 1.78
COMMD4-213ENST00000565834 ADAMTS13Q76LX8 1427 aa26.17■■□□□ 1.78
COMMD4-213ENST00000565834 CCDC7Q96M83 1385 aa26.17■■□□□ 1.78
COMMD4-213ENST00000565834 ANKLE2Q86XL3 938 aa26.16■■□□□ 1.78
COMMD4-213ENST00000565834 TESK2Q96S53 571 aa26.16■■□□□ 1.78
COMMD4-213ENST00000565834 KIF7Q2M1P5 1343 aa26.15■■□□□ 1.78
COMMD4-213ENST00000565834 DIP2AQ14689 1571 aa26.14■■□□□ 1.78
COMMD4-213ENST00000565834 QRICH2Q9H0J4 1663 aa26.14■■□□□ 1.77
COMMD4-213ENST00000565834 MED14O60244 1454 aa26.14■■□□□ 1.77
COMMD4-213ENST00000565834 STK26Q9P289 416 aa26.13■■□□□ 1.77
COMMD4-213ENST00000565834 METP08581 1390 aa26.13■■□□□ 1.77
COMMD4-213ENST00000565834 CENPJQ9HC77 1338 aaPredicted RBP26.13■■□□□ 1.77
COMMD4-213ENST00000565834 DDX10Q13206 875 aaKnown RBP26.12■■□□□ 1.77
COMMD4-213ENST00000565834 LRPPRCP42704 1394 aaKnown RBP26.12■■□□□ 1.77
COMMD4-213ENST00000565834 TMF1P82094 1093 aa26.1■■□□□ 1.77
COMMD4-213ENST00000565834 KNDC1Q76NI1 1749 aa26.09■■□□□ 1.77
COMMD4-213ENST00000565834 DLC1Q96QB1 1528 aa26.09■■□□□ 1.77
COMMD4-213ENST00000565834 SBNO2Q9Y2G9 1366 aa26.09■■□□□ 1.77
COMMD4-213ENST00000565834 SLC26A8Q96RN1 970 aa26.09■■□□□ 1.77
COMMD4-213ENST00000565834 DISP3Q9P2K9 1392 aa26.08■■□□□ 1.77
COMMD4-213ENST00000565834 SLC24A1O60721 1099 aa26.08■■□□□ 1.77
COMMD4-213ENST00000565834 TBX22Q9Y458 520 aa26.08■■□□□ 1.77
COMMD4-213ENST00000565834 ABCC11Q96J66 1382 aa26.07■■□□□ 1.76
COMMD4-213ENST00000565834 POLR3GLQ9BT43 218 aa26.06■■□□□ 1.76
COMMD4-213ENST00000565834 TECPR2O15040 1411 aa26.04■■□□□ 1.76
COMMD4-213ENST00000565834 NPHP4O75161 1426 aaPredicted RBP26.04■■□□□ 1.76
COMMD4-213ENST00000565834 LMTK3Q96Q04 1460 aa26.03■■□□□ 1.76
COMMD4-213ENST00000565834 CPS1P31327 1500 aa26.03■■□□□ 1.76
COMMD4-213ENST00000565834 PRAM1Q96QH2 718 aa26.02■■□□□ 1.76
COMMD4-213ENST00000565834 POGKQ9P215 609 aa26.02■■□□□ 1.76
COMMD4-213ENST00000565834 CDCA8Q53HL2 280 aa26.01■■□□□ 1.75
COMMD4-213ENST00000565834 NCKAP5LQ9HCH0 1330 aa26■■□□□ 1.75
COMMD4-213ENST00000565834 PIK3R4Q99570 1358 aa25.99■■□□□ 1.75
COMMD4-213ENST00000565834 FAM135BQ49AJ0 1406 aa25.98■■□□□ 1.75
COMMD4-213ENST00000565834 PTPRUQ92729 1446 aa25.98■■□□□ 1.75
COMMD4-213ENST00000565834 SAFB2Q14151 953 aaKnown RBP eCLIP25.98■■□□□ 1.75
COMMD4-213ENST00000565834 SIRT1Q96EB6 747 aa25.97■■□□□ 1.75
COMMD4-213ENST00000565834 HSPA2P54652 639 aa25.96■■□□□ 1.75
COMMD4-213ENST00000565834 AEBP2Q6ZN18 517 aaPredicted RBP25.96■■□□□ 1.75
COMMD4-213ENST00000565834 XRN1Q8IZH2 1706 aaKnown RBP25.96■■□□□ 1.75
COMMD4-213ENST00000565834 CHD2O14647 1828 aaKnown RBP25.95■■□□□ 1.74
COMMD4-213ENST00000565834 AMOTL2Q9Y2J4 779 aa25.94■■□□□ 1.74
COMMD4-213ENST00000565834 PLEKHH1Q9ULM0 1364 aa25.94■■□□□ 1.74
COMMD4-213ENST00000565834 WAPLQ7Z5K2 1190 aa25.93■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms