RNA–Protein interactions for RNA: ENST00000563207.1

USB1-208, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 5

Gene USB1, Length 464 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-208ENST00000563207 IQGAP3Q86VI3 1631 aa23.82■■□□□ 1.4
USB1-208ENST00000563207 NUP155O75694 1391 aa23.79■■□□□ 1.4
USB1-208ENST00000563207 ZFYVE9O95405 1425 aa23.79■■□□□ 1.4
USB1-208ENST00000563207 NUTM2DQ5VT03 806 aaPredicted RBP23.78■■□□□ 1.4
USB1-208ENST00000563207 RRBP1Q9P2E9 1410 aaKnown RBP23.77■■□□□ 1.4
USB1-208ENST00000563207 CHGAP10645 457 aaKnown RBP23.77■■□□□ 1.4
USB1-208ENST00000563207 RIMS2Q9UQ26 1411 aa23.76■■□□□ 1.39
USB1-208ENST00000563207 BCANQ96GW7 911 aa23.76■■□□□ 1.39
USB1-208ENST00000563207 KCNA6P17658 529 aa23.75■■□□□ 1.39
USB1-208ENST00000563207 TMEM94Q12767 1356 aa23.74■■□□□ 1.39
USB1-208ENST00000563207 MED1Q15648 1581 aaPredicted RBP23.73■■□□□ 1.39
USB1-208ENST00000563207 PROSER2Q86WR7 435 aaPredicted RBP23.71■■□□□ 1.39
USB1-208ENST00000563207 PLEKHG1Q9ULL1 1385 aa23.7■■□□□ 1.38
USB1-208ENST00000563207 NWD1Q149M9 1564 aa23.69■■□□□ 1.38
USB1-208ENST00000563207 PPP1R15AO75807 674 aaPredicted RBP23.69■■□□□ 1.38
USB1-208ENST00000563207 CHD2O14647 1828 aaKnown RBP23.68■■□□□ 1.38
USB1-208ENST00000563207 SOCS7O14512 581 aa23.66■■□□□ 1.38
USB1-208ENST00000563207 SPHKAPQ2M3C7 1700 aa23.65■■□□□ 1.38
USB1-208ENST00000563207 NAIPQ13075 1403 aa23.65■■□□□ 1.38
USB1-208ENST00000563207 ADAMTS13Q76LX8 1427 aa23.64■■□□□ 1.37
USB1-208ENST00000563207 NKTRP30414 1462 aaKnown RBP23.62■■□□□ 1.37
USB1-208ENST00000563207 HDGFP51858 240 aaKnown RBP23.6■■□□□ 1.37
USB1-208ENST00000563207 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.6■■□□□ 1.37
USB1-208ENST00000563207 TBX22Q9Y458 520 aa23.6■■□□□ 1.37
USB1-208ENST00000563207 ROBO1Q9Y6N7 1651 aa23.6■■□□□ 1.37
USB1-208ENST00000563207 CLTCL1P53675 1640 aa23.59■■□□□ 1.37
USB1-208ENST00000563207 FAM135BQ49AJ0 1406 aa23.58■■□□□ 1.36
USB1-208ENST00000563207 PTPRUQ92729 1446 aa23.56■■□□□ 1.36
USB1-208ENST00000563207 NRXN3Q9Y4C0 1643 aa23.55■■□□□ 1.36
USB1-208ENST00000563207 MSH6P52701 1360 aa23.53■■□□□ 1.36
USB1-208ENST00000563207 ZNF326Q5BKZ1 582 aaKnown RBP23.52■■□□□ 1.36
USB1-208ENST00000563207 TRIM52Q96A61 297 aa23.52■■□□□ 1.36
USB1-208ENST00000563207 SLAIN2Q9P270 581 aa23.51■■□□□ 1.35
USB1-208ENST00000563207 DIP2AQ14689 1571 aa23.51■■□□□ 1.35
USB1-208ENST00000563207 HFM1A2PYH4 1435 aa23.5■■□□□ 1.35
USB1-208ENST00000563207 AMOTL2Q9Y2J4 779 aa23.5■■□□□ 1.35
USB1-208ENST00000563207 TRPM2O94759 1503 aa23.49■■□□□ 1.35
USB1-208ENST00000563207 PHF23Q9BUL5 403 aaPredicted RBP23.49■■□□□ 1.35
USB1-208ENST00000563207 SIPA1L2Q9P2F8 1722 aaPredicted RBP23.49■■□□□ 1.35
USB1-208ENST00000563207 RGS17Q9UGC6 210 aaPredicted RBP23.48■■□□□ 1.35
USB1-208ENST00000563207 NEXMIFQ5QGS0 1516 aa23.48■■□□□ 1.35
USB1-208ENST00000563207 C14orf37Q86TY3 774 aa23.47■■□□□ 1.35
USB1-208ENST00000563207 METP08581 1390 aa23.47■■□□□ 1.35
USB1-208ENST00000563207 SETBP1Q9Y6X0 1596 aa23.47■■□□□ 1.35
USB1-208ENST00000563207 KIF1BO60333 1816 aa23.47■■□□□ 1.35
USB1-208ENST00000563207 FOXD1Q16676 465 aa23.46■■□□□ 1.35
USB1-208ENST00000563207 PIK3R4Q99570 1358 aa23.45■■□□□ 1.34
USB1-208ENST00000563207 PHLPP1O60346 1717 aa23.45■■□□□ 1.34
USB1-208ENST00000563207 XRN1Q8IZH2 1706 aaKnown RBP23.44■■□□□ 1.34
USB1-208ENST00000563207 SLC4A1APQ9BWU0 796 aaKnown RBP23.43■■□□□ 1.34
USB1-208ENST00000563207 NCOA3Q9Y6Q9 1424 aa23.41■■□□□ 1.34
USB1-208ENST00000563207 C19orf44Q9H6X5 657 aa23.4■■□□□ 1.34
USB1-208ENST00000563207 COL16A1Q07092 1604 aaPredicted RBP23.38■■□□□ 1.33
USB1-208ENST00000563207 ATF3P18847 181 aa23.36■■□□□ 1.33
USB1-208ENST00000563207 SETD1AO15047 1707 aaKnown RBP23.36■■□□□ 1.33
USB1-208ENST00000563207 CADPS2Q86UW7 1296 aa23.35■■□□□ 1.33
USB1-208ENST00000563207 POTEAQ6S8J7 498 aa23.33■■□□□ 1.33
USB1-208ENST00000563207 PPLO60437 1756 aa23.32■■□□□ 1.32
USB1-208ENST00000563207 NALCNQ8IZF0 1738 aa23.32■■□□□ 1.32
USB1-208ENST00000563207 BRINP3Q76B58 766 aa23.31■■□□□ 1.32
USB1-208ENST00000563207 ACIN1Q9UKV3 1341 aaKnown RBP23.31■■□□□ 1.32
USB1-208ENST00000563207 JCADQ9P266 1359 aa23.29■■□□□ 1.32
USB1-208ENST00000563207 MPHOSPH9Q99550 1183 aa23.29■■□□□ 1.32
USB1-208ENST00000563207 AHDC1Q5TGY3 1603 aaPredicted RBP23.29■■□□□ 1.32
USB1-208ENST00000563207 MST1RQ04912 1400 aa23.28■■□□□ 1.32
USB1-208ENST00000563207 VGFO15240 615 aaPredicted RBP23.28■■□□□ 1.32
USB1-208ENST00000563207 LRP6O75581 1613 aa23.27■■□□□ 1.32
USB1-208ENST00000563207 TRIM26Q12899 539 aaPredicted RBP23.27■■□□□ 1.32
USB1-208ENST00000563207 DDX17Q92841 729 aaKnown RBP23.27■■□□□ 1.32
USB1-208ENST00000563207 RGL3Q3MIN7 710 aa23.26■■□□□ 1.31
USB1-208ENST00000563207 ROBO2Q9HCK4 1378 aa23.26■■□□□ 1.31
USB1-208ENST00000563207 ASXL1Q8IXJ9 1541 aa23.25■■□□□ 1.31
USB1-208ENST00000563207 DCCP43146 1447 aa23.25■■□□□ 1.31
USB1-208ENST00000563207 ADGRL3Q9HAR2 1447 aa23.25■■□□□ 1.31
USB1-208ENST00000563207 RPGRIP1LQ68CZ1 1315 aa23.24■■□□□ 1.31
USB1-208ENST00000563207 ADGRF5Q8IZF2 1346 aa23.24■■□□□ 1.31
USB1-208ENST00000563207 SETD5Q9C0A6 1442 aa23.24■■□□□ 1.31
USB1-208ENST00000563207 SPATA31E1Q6ZUB1 1445 aa23.22■■□□□ 1.31
USB1-208ENST00000563207 NHSL1Q5SYE7 1610 aa23.21■■□□□ 1.31
USB1-208ENST00000563207 SHPRHQ149N8 1683 aa23.21■■□□□ 1.31
USB1-208ENST00000563207 IFT172Q9UG01 1749 aa23.2■■□□□ 1.3
USB1-208ENST00000563207 CCDC144AA2RUR9 1427 aa23.2■■□□□ 1.3
USB1-208ENST00000563207 HRCP23327 699 aa23.18■■□□□ 1.3
USB1-208ENST00000563207 PTCH1Q13635 1447 aa23.17■■□□□ 1.3
USB1-208ENST00000563207 NUTM2BA6NNL0 878 aaPredicted RBP23.17■■□□□ 1.3
USB1-208ENST00000563207 NUTM2EB1AL46 878 aaPredicted RBP23.17■■□□□ 1.3
USB1-208ENST00000563207 NUTM2AQ8IVF1 878 aaPredicted RBP23.17■■□□□ 1.3
USB1-208ENST00000563207 SPATA31A6Q5VVP1 1343 aa23.15■■□□□ 1.3
USB1-208ENST00000563207 ORAI2Q96SN7 254 aa23.15■■□□□ 1.3
USB1-208ENST00000563207 C1orf167Q5SNV9 1468 aa23.15■■□□□ 1.3
USB1-208ENST00000563207 TMEM132EQ6IEE7 984 aa23.14■■□□□ 1.29
USB1-208ENST00000563207 STK26Q9P289 416 aa23.14■■□□□ 1.29
USB1-208ENST00000563207 RAB3GAP2Q9H2M9 1393 aa23.14■■□□□ 1.29
USB1-208ENST00000563207 MEX3CQ5U5Q3 659 aaKnown RBP23.12■■□□□ 1.29
USB1-208ENST00000563207 PRAG1Q86YV5 1406 aa23.12■■□□□ 1.29
USB1-208ENST00000563207 WAPLQ7Z5K2 1190 aa23.11■■□□□ 1.29
USB1-208ENST00000563207 PLEKHH1Q9ULM0 1364 aa23.09■■□□□ 1.29
USB1-208ENST00000563207 ANKRD30BQ9BXX2 1392 aa23.08■■□□□ 1.29
USB1-208ENST00000563207 PIK3C2GO75747 1445 aa23.08■■□□□ 1.28
USB1-208ENST00000563207 PNPLA6Q8IY17 1366 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms