RNA–Protein interactions for RNA: ENST00000556737.1

SHMT2-224, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 572 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-224ENST00000556737 RIMS2Q9UQ26 1411 aa15.66■□□□□ 0.1
SHMT2-224ENST00000556737 PLEKHG1Q9ULL1 1385 aa15.63■□□□□ 0.09
SHMT2-224ENST00000556737 DIP2AQ14689 1571 aa15.62■□□□□ 0.09
SHMT2-224ENST00000556737 NRXN3Q9Y4C0 1643 aa15.61■□□□□ 0.09
SHMT2-224ENST00000556737 NKTRP30414 1462 aaKnown RBP15.6■□□□□ 0.09
SHMT2-224ENST00000556737 CHD2O14647 1828 aaKnown RBP15.6■□□□□ 0.09
SHMT2-224ENST00000556737 UBAP1LF5GYI3 381 aa15.6■□□□□ 0.09
SHMT2-224ENST00000556737 ADAMTS13Q76LX8 1427 aa15.6■□□□□ 0.09
SHMT2-224ENST00000556737 NEXMIFQ5QGS0 1516 aa15.59■□□□□ 0.09
SHMT2-224ENST00000556737 KIF1BO60333 1816 aa15.59■□□□□ 0.09
SHMT2-224ENST00000556737 SETBP1Q9Y6X0 1596 aa15.58■□□□□ 0.08
SHMT2-224ENST00000556737 SLC26A8Q96RN1 970 aa15.57■□□□□ 0.08
SHMT2-224ENST00000556737 CHGAP10645 457 aaKnown RBP15.56■□□□□ 0.08
SHMT2-224ENST00000556737 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.54■□□□□ 0.08
SHMT2-224ENST00000556737 TRIM52Q96A61 297 aa15.54■□□□□ 0.08
SHMT2-224ENST00000556737 XRN1Q8IZH2 1706 aaKnown RBP15.54■□□□□ 0.08
SHMT2-224ENST00000556737 PPP1R15AO75807 674 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-224ENST00000556737 KCNA6P17658 529 aa15.53■□□□□ 0.08
SHMT2-224ENST00000556737 NUTM2DQ5VT03 806 aaPredicted RBP15.53■□□□□ 0.08
SHMT2-224ENST00000556737 PPLO60437 1756 aa15.52■□□□□ 0.08
SHMT2-224ENST00000556737 TMEM94Q12767 1356 aa15.52■□□□□ 0.08
SHMT2-224ENST00000556737 SETD1AO15047 1707 aaKnown RBP15.52■□□□□ 0.08
SHMT2-224ENST00000556737 SENP3Q9H4L4 574 aaPredicted RBP15.52■□□□□ 0.08
SHMT2-224ENST00000556737 TOM1O60784 492 aa15.51■□□□□ 0.07
SHMT2-224ENST00000556737 SLC4A1APQ9BWU0 796 aaKnown RBP15.51■□□□□ 0.07
SHMT2-224ENST00000556737 SETD5Q9C0A6 1442 aa15.51■□□□□ 0.07
SHMT2-224ENST00000556737 HDGFP51858 240 aaKnown RBP15.5■□□□□ 0.07
SHMT2-224ENST00000556737 IFT172Q9UG01 1749 aa15.5■□□□□ 0.07
SHMT2-224ENST00000556737 PTPRUQ92729 1446 aa15.5■□□□□ 0.07
SHMT2-224ENST00000556737 PIK3R4Q99570 1358 aa15.49■□□□□ 0.07
SHMT2-224ENST00000556737 PIP4K2BP78356 416 aa15.49■□□□□ 0.07
SHMT2-224ENST00000556737 TBX22Q9Y458 520 aa15.49■□□□□ 0.07
SHMT2-224ENST00000556737 BCANQ96GW7 911 aa15.48■□□□□ 0.07
SHMT2-224ENST00000556737 FOXD1Q16676 465 aa15.47■□□□□ 0.07
SHMT2-224ENST00000556737 RAB3GAP2Q9H2M9 1393 aa15.47■□□□□ 0.07
SHMT2-224ENST00000556737 SCAF1Q9H7N4 1312 aaKnown RBP15.46■□□□□ 0.07
SHMT2-224ENST00000556737 HSPA1LP34931 641 aa15.46■□□□□ 0.07
SHMT2-224ENST00000556737 ROBO1Q9Y6N7 1651 aa15.45■□□□□ 0.06
SHMT2-224ENST00000556737 SPATA31E1Q6ZUB1 1445 aa15.45■□□□□ 0.06
SHMT2-224ENST00000556737 ZNF326Q5BKZ1 582 aaKnown RBP15.45■□□□□ 0.06
SHMT2-224ENST00000556737 RBM33Q96EV2 1170 aaKnown RBP15.45■□□□□ 0.06
SHMT2-224ENST00000556737 CCDC144AA2RUR9 1427 aa15.44■□□□□ 0.06
SHMT2-224ENST00000556737 PROSER2Q86WR7 435 aaPredicted RBP15.44■□□□□ 0.06
SHMT2-224ENST00000556737 MPHOSPH9Q99550 1183 aa15.44■□□□□ 0.06
SHMT2-224ENST00000556737 NCOA3Q9Y6Q9 1424 aa15.43■□□□□ 0.06
SHMT2-224ENST00000556737 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-224ENST00000556737 METP08581 1390 aa15.43■□□□□ 0.06
SHMT2-224ENST00000556737 MED1Q15648 1581 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-224ENST00000556737 FAM135BQ49AJ0 1406 aa15.42■□□□□ 0.06
SHMT2-224ENST00000556737 MSH6P52701 1360 aa15.41■□□□□ 0.06
SHMT2-224ENST00000556737 NALCNQ8IZF0 1738 aa15.41■□□□□ 0.06
SHMT2-224ENST00000556737 PRAG1Q86YV5 1406 aa15.41■□□□□ 0.06
SHMT2-224ENST00000556737 ACIN1Q9UKV3 1341 aaKnown RBP15.4■□□□□ 0.06
SHMT2-224ENST00000556737 RPGRIP1LQ68CZ1 1315 aa15.39■□□□□ 0.05
SHMT2-224ENST00000556737 ASXL1Q8IXJ9 1541 aa15.38■□□□□ 0.05
SHMT2-224ENST00000556737 AMOTL2Q9Y2J4 779 aa15.38■□□□□ 0.05
SHMT2-224ENST00000556737 DISP3Q9P2K9 1392 aa15.37■□□□□ 0.05
SHMT2-224ENST00000556737 DCCP43146 1447 aa15.37■□□□□ 0.05
SHMT2-224ENST00000556737 PTCH1Q13635 1447 aa15.37■□□□□ 0.05
SHMT2-224ENST00000556737 VGFO15240 615 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-224ENST00000556737 COL16A1Q07092 1604 aaPredicted RBP15.35■□□□□ 0.05
SHMT2-224ENST00000556737 PIK3C2GO75747 1445 aa15.34■□□□□ 0.05
SHMT2-224ENST00000556737 ADGRL3Q9HAR2 1447 aa15.34■□□□□ 0.05
SHMT2-224ENST00000556737 PHLPP1O60346 1717 aa15.34■□□□□ 0.05
SHMT2-224ENST00000556737 KNDC1Q76NI1 1749 aa15.34■□□□□ 0.05
SHMT2-224ENST00000556737 NRXN1Q9ULB1 1477 aa15.34■□□□□ 0.05
SHMT2-224ENST00000556737 MYOM2P54296 1465 aa15.33■□□□□ 0.05
SHMT2-224ENST00000556737 AHDC1Q5TGY3 1603 aaPredicted RBP15.33■□□□□ 0.04
SHMT2-224ENST00000556737 ADGRF5Q8IZF2 1346 aa15.33■□□□□ 0.04
SHMT2-224ENST00000556737 ANKRD30BQ9BXX2 1392 aa15.33■□□□□ 0.04
SHMT2-224ENST00000556737 LAMC1P11047 1609 aa15.32■□□□□ 0.04
SHMT2-224ENST00000556737 ROBO2Q9HCK4 1378 aa15.32■□□□□ 0.04
SHMT2-224ENST00000556737 HRCP23327 699 aa15.31■□□□□ 0.04
SHMT2-224ENST00000556737 C19orf44Q9H6X5 657 aa15.31■□□□□ 0.04
SHMT2-224ENST00000556737 SLAIN2Q9P270 581 aa15.31■□□□□ 0.04
SHMT2-224ENST00000556737 MST1RQ04912 1400 aa15.31■□□□□ 0.04
SHMT2-224ENST00000556737 NHSL1Q5SYE7 1610 aa15.3■□□□□ 0.04
SHMT2-224ENST00000556737 TECPR2O15040 1411 aa15.29■□□□□ 0.04
SHMT2-224ENST00000556737 RGL3Q3MIN7 710 aa15.29■□□□□ 0.04
SHMT2-224ENST00000556737 C14orf37Q86TY3 774 aa15.29■□□□□ 0.04
SHMT2-224ENST00000556737 ILDR2Q71H61 639 aa15.28■□□□□ 0.04
SHMT2-224ENST00000556737 CADPS2Q86UW7 1296 aa15.28■□□□□ 0.04
SHMT2-224ENST00000556737 CDC42BPGQ6DT37 1551 aa15.28■□□□□ 0.04
SHMT2-224ENST00000556737 ATF3P18847 181 aa15.26■□□□□ 0.03
SHMT2-224ENST00000556737 SHPRHQ149N8 1683 aa15.25■□□□□ 0.03
SHMT2-224ENST00000556737 LRPPRCP42704 1394 aaKnown RBP15.25■□□□□ 0.03
SHMT2-224ENST00000556737 BRINP3Q76B58 766 aa15.24■□□□□ 0.03
SHMT2-224ENST00000556737 ADGRB1O14514 1584 aa15.24■□□□□ 0.03
SHMT2-224ENST00000556737 YTHDC2Q9H6S0 1430 aaKnown RBP15.23■□□□□ 0.03
SHMT2-224ENST00000556737 C1orf167Q5SNV9 1468 aa15.22■□□□□ 0.03
SHMT2-224ENST00000556737 ABCC11Q96J66 1382 aa15.22■□□□□ 0.03
SHMT2-224ENST00000556737 JCADQ9P266 1359 aa15.21■□□□□ 0.02
SHMT2-224ENST00000556737 FMN2Q9NZ56 1722 aa15.2■□□□□ 0.02
SHMT2-224ENST00000556737 LRP6O75581 1613 aa15.2■□□□□ 0.02
SHMT2-224ENST00000556737 DHX57Q6P158 1386 aaKnown RBP15.2■□□□□ 0.02
SHMT2-224ENST00000556737 PLEKHH1Q9ULM0 1364 aa15.2■□□□□ 0.02
SHMT2-224ENST00000556737 DLC1Q96QB1 1528 aa15.19■□□□□ 0.02
SHMT2-224ENST00000556737 C14orf93Q9H972 538 aaKnown RBP15.19■□□□□ 0.02
SHMT2-224ENST00000556737 TMEM132EQ6IEE7 984 aa15.18■□□□□ 0.02
SHMT2-224ENST00000556737 CFAP70Q5T0N1 1121 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms