RNA–Protein interactions for RNA: ENST00000556571.1

ACTN1-221, Transcript of actinin alpha 1, humanhuman

TSL 4

Gene ACTN1, Length 568 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-221ENST00000556571 MSH6P52701 1360 aa18.52■□□□□ 0.55
ACTN1-221ENST00000556571 ADGRB3O60242 1522 aa18.51■□□□□ 0.55
ACTN1-221ENST00000556571 ROBO1Q9Y6N7 1651 aa18.49■□□□□ 0.55
ACTN1-221ENST00000556571 RPRD2Q5VT52 1461 aaKnown RBP18.48■□□□□ 0.55
ACTN1-221ENST00000556571 PPP1R15AO75807 674 aaPredicted RBP18.48■□□□□ 0.55
ACTN1-221ENST00000556571 NWD1Q149M9 1564 aa18.47■□□□□ 0.55
ACTN1-221ENST00000556571 ADGRL2O95490 1459 aa18.47■□□□□ 0.55
ACTN1-221ENST00000556571 PLEKHG1Q9ULL1 1385 aa18.47■□□□□ 0.55
ACTN1-221ENST00000556571 FAM50AQ14320 339 aaKnown RBP18.46■□□□□ 0.55
ACTN1-221ENST00000556571 TBX22Q9Y458 520 aa18.46■□□□□ 0.55
ACTN1-221ENST00000556571 ANKRD50Q9ULJ7 1429 aa18.46■□□□□ 0.55
ACTN1-221ENST00000556571 JCADQ9P266 1359 aa18.45■□□□□ 0.54
ACTN1-221ENST00000556571 ZFYVE9O95405 1425 aa18.45■□□□□ 0.54
ACTN1-221ENST00000556571 RIMS2Q9UQ26 1411 aa18.44■□□□□ 0.54
ACTN1-221ENST00000556571 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.44■□□□□ 0.54
ACTN1-221ENST00000556571 NCOA3Q9Y6Q9 1424 aa18.43■□□□□ 0.54
ACTN1-221ENST00000556571 C14orf37Q86TY3 774 aa18.41■□□□□ 0.54
ACTN1-221ENST00000556571 CHGAP10645 457 aaKnown RBP18.4■□□□□ 0.54
ACTN1-221ENST00000556571 CADPS2Q86UW7 1296 aa18.38■□□□□ 0.53
ACTN1-221ENST00000556571 C19orf44Q9H6X5 657 aa18.38■□□□□ 0.53
ACTN1-221ENST00000556571 SPATA31A6Q5VVP1 1343 aa18.38■□□□□ 0.53
ACTN1-221ENST00000556571 PHLPP1O60346 1717 aa18.37■□□□□ 0.53
ACTN1-221ENST00000556571 CHD2O14647 1828 aaKnown RBP18.37■□□□□ 0.53
ACTN1-221ENST00000556571 ATF3P18847 181 aa18.37■□□□□ 0.53
ACTN1-221ENST00000556571 TMEM131LA2VDJ0 1609 aa18.37■□□□□ 0.53
ACTN1-221ENST00000556571 NUTM2DQ5VT03 806 aaPredicted RBP18.36■□□□□ 0.53
ACTN1-221ENST00000556571 PIK3R4Q99570 1358 aa18.36■□□□□ 0.53
ACTN1-221ENST00000556571 ADAMTS13Q76LX8 1427 aa18.35■□□□□ 0.53
ACTN1-221ENST00000556571 MEX3CQ5U5Q3 659 aaKnown RBP18.34■□□□□ 0.53
ACTN1-221ENST00000556571 ZNF772Q68DY9 489 aaPredicted RBP18.34■□□□□ 0.53
ACTN1-221ENST00000556571 GCC2Q8IWJ2 1684 aa18.33■□□□□ 0.52
ACTN1-221ENST00000556571 COL16A1Q07092 1604 aaPredicted RBP18.32■□□□□ 0.52
ACTN1-221ENST00000556571 AMOTL2Q9Y2J4 779 aa18.32■□□□□ 0.52
ACTN1-221ENST00000556571 MYO5BQ9ULV0 1848 aa18.32■□□□□ 0.52
ACTN1-221ENST00000556571 DIP2AQ14689 1571 aa18.3■□□□□ 0.52
ACTN1-221ENST00000556571 UNC13BO14795 1591 aa18.3■□□□□ 0.52
ACTN1-221ENST00000556571 ROCK1Q13464 1354 aa18.3■□□□□ 0.52
ACTN1-221ENST00000556571 LRP6O75581 1613 aa18.29■□□□□ 0.52
ACTN1-221ENST00000556571 AHDC1Q5TGY3 1603 aaPredicted RBP18.28■□□□□ 0.52
ACTN1-221ENST00000556571 BRINP3Q76B58 766 aa18.28■□□□□ 0.52
ACTN1-221ENST00000556571 NUP155O75694 1391 aa18.28■□□□□ 0.52
ACTN1-221ENST00000556571 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.26■□□□□ 0.51
ACTN1-221ENST00000556571 UPF1Q92900 1129 aaKnown RBP eCLIP18.26■□□□□ 0.51
ACTN1-221ENST00000556571 TRIM52Q96A61 297 aa18.26■□□□□ 0.51
ACTN1-221ENST00000556571 TRPM2O94759 1503 aa18.26■□□□□ 0.51
ACTN1-221ENST00000556571 E9PCH4 1651 aa18.25■□□□□ 0.51
ACTN1-221ENST00000556571 PTPRUQ92729 1446 aa18.25■□□□□ 0.51
ACTN1-221ENST00000556571 RXRBP28702 533 aa18.25■□□□□ 0.51
ACTN1-221ENST00000556571 SETD1AO15047 1707 aaKnown RBP18.25■□□□□ 0.51
ACTN1-221ENST00000556571 DCCP43146 1447 aa18.24■□□□□ 0.51
ACTN1-221ENST00000556571 NUTM2BA6NNL0 878 aaPredicted RBP18.23■□□□□ 0.51
ACTN1-221ENST00000556571 NUTM2EB1AL46 878 aaPredicted RBP18.23■□□□□ 0.51
ACTN1-221ENST00000556571 NUTM2AQ8IVF1 878 aaPredicted RBP18.23■□□□□ 0.51
ACTN1-221ENST00000556571 IQGAP3Q86VI3 1631 aa18.23■□□□□ 0.51
ACTN1-221ENST00000556571 SHPRHQ149N8 1683 aa18.22■□□□□ 0.51
ACTN1-221ENST00000556571 LRRC59Q96AG4 307 aaKnown RBP18.21■□□□□ 0.51
ACTN1-221ENST00000556571 ZNF326Q5BKZ1 582 aaKnown RBP18.2■□□□□ 0.5
ACTN1-221ENST00000556571 ITGAEP38570 1179 aa18.19■□□□□ 0.5
ACTN1-221ENST00000556571 SETD5Q9C0A6 1442 aa18.19■□□□□ 0.5
ACTN1-221ENST00000556571 AFF2P51816 1311 aa18.18■□□□□ 0.5
ACTN1-221ENST00000556571 ASXL1Q8IXJ9 1541 aa18.18■□□□□ 0.5
ACTN1-221ENST00000556571 MST1RQ04912 1400 aa18.17■□□□□ 0.5
ACTN1-221ENST00000556571 CDK12Q9NYV4 1490 aaPredicted RBP18.17■□□□□ 0.5
ACTN1-221ENST00000556571 METP08581 1390 aa18.17■□□□□ 0.5
ACTN1-221ENST00000556571 SETBP1Q9Y6X0 1596 aa18.16■□□□□ 0.5
ACTN1-221ENST00000556571 XRN1Q8IZH2 1706 aaKnown RBP18.14■□□□□ 0.49
ACTN1-221ENST00000556571 NRXN3Q9Y4C0 1643 aa18.13■□□□□ 0.49
ACTN1-221ENST00000556571 QTRT2Q9H974 415 aaKnown RBP18.13■□□□□ 0.49
ACTN1-221ENST00000556571 ADGRL3Q9HAR2 1447 aa18.13■□□□□ 0.49
ACTN1-221ENST00000556571 RBM6P78332 1123 aaKnown RBP18.12■□□□□ 0.49
ACTN1-221ENST00000556571 C8orf37Q96NL8 207 aa18.12■□□□□ 0.49
ACTN1-221ENST00000556571 DDX17Q92841 729 aaKnown RBP18.11■□□□□ 0.49
ACTN1-221ENST00000556571 PNPLA6Q8IY17 1366 aa18.11■□□□□ 0.49
ACTN1-221ENST00000556571 NHSL1Q5SYE7 1610 aa18.09■□□□□ 0.49
ACTN1-221ENST00000556571 NGLY1Q96IV0 654 aa18.08■□□□□ 0.48
ACTN1-221ENST00000556571 SPHKAPQ2M3C7 1700 aa18.07■□□□□ 0.48
ACTN1-221ENST00000556571 C1orf167Q5SNV9 1468 aa18.07■□□□□ 0.48
ACTN1-221ENST00000556571 VGFO15240 615 aaPredicted RBP18.06■□□□□ 0.48
ACTN1-221ENST00000556571 NEXMIFQ5QGS0 1516 aa18.05■□□□□ 0.48
ACTN1-221ENST00000556571 ADAMTS2O95450 1211 aa18.05■□□□□ 0.48
ACTN1-221ENST00000556571 RGS12O14924 1447 aa18.05■□□□□ 0.48
ACTN1-221ENST00000556571 SOS2Q07890 1332 aaPredicted RBP18.04■□□□□ 0.48
ACTN1-221ENST00000556571 PPARGC1BQ86YN6 1023 aaKnown RBP18.03■□□□□ 0.48
ACTN1-221ENST00000556571 ORAI2Q96SN7 254 aa18.03■□□□□ 0.48
ACTN1-221ENST00000556571 PTCH1Q13635 1447 aa18.03■□□□□ 0.48
ACTN1-221ENST00000556571 ROBO2Q9HCK4 1378 aa18.02■□□□□ 0.47
ACTN1-221ENST00000556571 CLTCL1P53675 1640 aa18.01■□□□□ 0.47
ACTN1-221ENST00000556571 RPGRIP1LQ68CZ1 1315 aa18.01■□□□□ 0.47
ACTN1-221ENST00000556571 USP21Q9UK80 565 aa18.01■□□□□ 0.47
ACTN1-221ENST00000556571 TRPC5Q9UL62 973 aaPredicted RBP18■□□□□ 0.47
ACTN1-221ENST00000556571 NALCNQ8IZF0 1738 aa18■□□□□ 0.47
ACTN1-221ENST00000556571 FNBP4Q8N3X1 1017 aaPredicted RBP17.99■□□□□ 0.47
ACTN1-221ENST00000556571 ATAD2Q6PL18 1390 aa17.98■□□□□ 0.47
ACTN1-221ENST00000556571 PRAG1Q86YV5 1406 aa17.98■□□□□ 0.47
ACTN1-221ENST00000556571 LAMC1P11047 1609 aa17.97■□□□□ 0.47
ACTN1-221ENST00000556571 HFM1A2PYH4 1435 aa17.97■□□□□ 0.47
ACTN1-221ENST00000556571 NAIPQ13075 1403 aa17.97■□□□□ 0.47
ACTN1-221ENST00000556571 KIF1BO60333 1816 aa17.95■□□□□ 0.46
ACTN1-221ENST00000556571 FOXD1Q16676 465 aa17.95■□□□□ 0.46
ACTN1-221ENST00000556571 NPHP3Q7Z494 1330 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms