RNA–Protein interactions for RNA: ENST00000556413.1

SCFD1-219, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 512 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-219ENST00000556413 SMYD5Q6GMV2 418 aa10.58□□□□□ -0.72
SCFD1-219ENST00000556413 PRR14Q9BWN1 585 aa10.58□□□□□ -0.72
SCFD1-219ENST00000556413 KDM2AQ9Y2K7 1162 aa10.58□□□□□ -0.72
SCFD1-219ENST00000556413 PXYLP1Q8TE99 480 aa10.56□□□□□ -0.72
SCFD1-219ENST00000556413 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.56□□□□□ -0.72
SCFD1-219ENST00000556413 PCDHB3Q9Y5E6 796 aa10.56□□□□□ -0.72
SCFD1-219ENST00000556413 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.55□□□□□ -0.72
SCFD1-219ENST00000556413 ZPR1O75312 459 aa10.55□□□□□ -0.72
SCFD1-219ENST00000556413 OATP04181 439 aa10.55□□□□□ -0.72
SCFD1-219ENST00000556413 GPR37O15354 613 aa10.54□□□□□ -0.72
SCFD1-219ENST00000556413 FECHP22830 423 aa10.54□□□□□ -0.72
SCFD1-219ENST00000556413 PRKD2Q9BZL6 878 aa10.54□□□□□ -0.72
SCFD1-219ENST00000556413 GNPATO15228 680 aa10.53□□□□□ -0.72
SCFD1-219ENST00000556413 SLC10A3P09131 477 aa10.53□□□□□ -0.72
SCFD1-219ENST00000556413 BLOC1S3Q6QNY0 202 aa10.53□□□□□ -0.72
SCFD1-219ENST00000556413 METTL3Q86U44 580 aaKnown RBP10.53□□□□□ -0.72
SCFD1-219ENST00000556413 ACTN4O43707 911 aaKnown RBP10.52□□□□□ -0.73
SCFD1-219ENST00000556413 CFHP08603 1231 aa10.52□□□□□ -0.73
SCFD1-219ENST00000556413 KMT5BQ4FZB7 885 aa10.51□□□□□ -0.73
SCFD1-219ENST00000556413 GGCXP38435 758 aa10.49□□□□□ -0.73
SCFD1-219ENST00000556413 V9GY48 417 aaPredicted RBP10.49□□□□□ -0.73
SCFD1-219ENST00000556413 Q6ZNB5 142 aa10.48□□□□□ -0.73
SCFD1-219ENST00000556413 TMUB1Q9BVT8 246 aa10.48□□□□□ -0.73
SCFD1-219ENST00000556413 TLL1O43897 1013 aa10.46□□□□□ -0.73
SCFD1-219ENST00000556413 GFRA3O60609 400 aa10.45□□□□□ -0.74
SCFD1-219ENST00000556413 LAPTM4AQ15012 233 aa10.45□□□□□ -0.74
SCFD1-219ENST00000556413 GPIHBP1Q8IV16 184 aa10.44□□□□□ -0.74
SCFD1-219ENST00000556413 RNF223E7ERA6 249 aa10.43□□□□□ -0.74
SCFD1-219ENST00000556413 RSPH4AQ5TD94 716 aa10.43□□□□□ -0.74
SCFD1-219ENST00000556413 VSIG10Q8N0Z9 540 aa10.43□□□□□ -0.74
SCFD1-219ENST00000556413 NLRP7Q8WX94 980 aa10.43□□□□□ -0.74
SCFD1-219ENST00000556413 DAXXQ9UER7 740 aaPredicted RBP10.43□□□□□ -0.74
SCFD1-219ENST00000556413 PHOX2BQ99453 314 aa10.42□□□□□ -0.74
SCFD1-219ENST00000556413 NR1I2O75469 434 aa10.41□□□□□ -0.74
SCFD1-219ENST00000556413 PUS10Q3MIT2 529 aaKnown RBP10.4□□□□□ -0.74
SCFD1-219ENST00000556413 SCUBE3Q8IX30 993 aa10.4□□□□□ -0.74
SCFD1-219ENST00000556413 NRG2O14511 850 aaPredicted RBP10.39□□□□□ -0.75
SCFD1-219ENST00000556413 S1PR4O95977 384 aa10.39□□□□□ -0.75
SCFD1-219ENST00000556413 EMID1Q96A84 441 aaPredicted RBP10.39□□□□□ -0.75
SCFD1-219ENST00000556413 DDX11L8A8MPP1 907 aa10.38□□□□□ -0.75
SCFD1-219ENST00000556413 LCE2BO14633 110 aa10.38□□□□□ -0.75
SCFD1-219ENST00000556413 PPEF1O14829 653 aaPredicted RBP10.38□□□□□ -0.75
SCFD1-219ENST00000556413 ADH1BP00325 375 aa10.38□□□□□ -0.75
SCFD1-219ENST00000556413 RDH13Q8NBN7 331 aa10.38□□□□□ -0.75
SCFD1-219ENST00000556413 SLC19A1P41440 591 aa10.37□□□□□ -0.75
SCFD1-219ENST00000556413 ANKLE1Q8NAG6 615 aa10.36□□□□□ -0.75
SCFD1-219ENST00000556413 PDZRN3Q9UPQ7 1066 aa10.36□□□□□ -0.75
SCFD1-219ENST00000556413 FUT2Q10981 343 aa10.34□□□□□ -0.75
SCFD1-219ENST00000556413 MORN1Q5T089 497 aa10.34□□□□□ -0.75
SCFD1-219ENST00000556413 TRAF7Q6Q0C0 670 aa10.34□□□□□ -0.75
SCFD1-219ENST00000556413 SULF1Q8IWU6 871 aa10.34□□□□□ -0.75
SCFD1-219ENST00000556413 SLC6A16Q9GZN6 736 aa10.34□□□□□ -0.75
SCFD1-219ENST00000556413 GCGRP47871 477 aa10.33□□□□□ -0.76
SCFD1-219ENST00000556413 TULP1O00294 542 aaPredicted RBP10.32□□□□□ -0.76
SCFD1-219ENST00000556413 MAP2K5Q13163 448 aa10.32□□□□□ -0.76
SCFD1-219ENST00000556413 SPRYD7Q5W111 196 aa10.32□□□□□ -0.76
SCFD1-219ENST00000556413 SPSB2Q99619 263 aa10.32□□□□□ -0.76
SCFD1-219ENST00000556413 ATP6V1AP38606 617 aa10.31□□□□□ -0.76
SCFD1-219ENST00000556413 LIAT1Q6ZQX7 453 aa10.31□□□□□ -0.76
SCFD1-219ENST00000556413 TRIM67Q6ZTA4 783 aa10.31□□□□□ -0.76
SCFD1-219ENST00000556413 THAP11Q96EK4 314 aa10.3□□□□□ -0.76
SCFD1-219ENST00000556413 PLA2G2CQ5R387 149 aa10.29□□□□□ -0.76
SCFD1-219ENST00000556413 ZNF598Q86UK7 904 aaKnown RBP10.29□□□□□ -0.76
SCFD1-219ENST00000556413 SLC27A5Q9Y2P5 690 aa10.29□□□□□ -0.76
SCFD1-219ENST00000556413 IRF6O14896 467 aa10.28□□□□□ -0.76
SCFD1-219ENST00000556413 MINK1Q8N4C8 1332 aaPredicted RBP10.26□□□□□ -0.77
SCFD1-219ENST00000556413 FMNL1O95466 1100 aaPredicted RBP10.25□□□□□ -0.77
SCFD1-219ENST00000556413 ZNF697Q5TEC3 545 aa10.25□□□□□ -0.77
SCFD1-219ENST00000556413 FAM160A2Q8N612 972 aaPredicted RBP10.25□□□□□ -0.77
SCFD1-219ENST00000556413 CD46P15529 392 aa10.24□□□□□ -0.77
SCFD1-219ENST00000556413 SALL2Q9Y467 1007 aaPredicted RBP10.24□□□□□ -0.77
SCFD1-219ENST00000556413 PRR20EP86478 221 aa10.23□□□□□ -0.77
SCFD1-219ENST00000556413 PRR20CP86479 221 aa10.23□□□□□ -0.77
SCFD1-219ENST00000556413 PRR20DP86480 221 aa10.23□□□□□ -0.77
SCFD1-219ENST00000556413 PRR20BP86481 221 aa10.23□□□□□ -0.77
SCFD1-219ENST00000556413 PRR20AP86496 221 aa10.23□□□□□ -0.77
SCFD1-219ENST00000556413 MDM2Q00987 491 aaPredicted RBP10.23□□□□□ -0.77
SCFD1-219ENST00000556413 BRICD5Q6PL45 260 aa10.23□□□□□ -0.77
SCFD1-219ENST00000556413 GRIPAP1Q4V328 841 aa10.22□□□□□ -0.77
SCFD1-219ENST00000556413 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.22□□□□□ -0.77
SCFD1-219ENST00000556413 CCDC102AQ96A19 550 aa10.22□□□□□ -0.77
SCFD1-219ENST00000556413 GDF9O60383 454 aa10.21□□□□□ -0.77
SCFD1-219ENST00000556413 RNF19BQ6ZMZ0 732 aa10.21□□□□□ -0.77
SCFD1-219ENST00000556413 FCF1Q9Y324 198 aaKnown RBP10.21□□□□□ -0.77
SCFD1-219ENST00000556413 PRDM9Q9NQV7 894 aa10.2□□□□□ -0.78
SCFD1-219ENST00000556413 TNFRSF10AO00220 468 aa10.19□□□□□ -0.78
SCFD1-219ENST00000556413 KDM4AO75164 1064 aa10.18□□□□□ -0.78
SCFD1-219ENST00000556413 DGAT1O75907 488 aa10.17□□□□□ -0.78
SCFD1-219ENST00000556413 RPIAP49247 311 aa10.17□□□□□ -0.78
SCFD1-219ENST00000556413 MSS51Q4VC12 460 aa10.17□□□□□ -0.78
SCFD1-219ENST00000556413 PKDCCQ504Y2 493 aa10.17□□□□□ -0.78
SCFD1-219ENST00000556413 Q3C1V9 767 aa10.16□□□□□ -0.78
SCFD1-219ENST00000556413 PKD2L1Q9P0L9 805 aa10.16□□□□□ -0.78
SCFD1-219ENST00000556413 LMOD2Q6P5Q4 547 aa10.15□□□□□ -0.78
SCFD1-219ENST00000556413 GPCPD1Q9NPB8 672 aa10.15□□□□□ -0.78
SCFD1-219ENST00000556413 CLCN1P35523 988 aa10.14□□□□□ -0.79
SCFD1-219ENST00000556413 MYT1Q01538 1121 aa10.14□□□□□ -0.79
SCFD1-219ENST00000556413 HLA-CQ95604 372 aa10.14□□□□□ -0.79
SCFD1-219ENST00000556413 FAM187AA6NFU0 413 aa10.13□□□□□ -0.79
SCFD1-219ENST00000556413 CD2BP2O95400 341 aaKnown RBP10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms