RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PPP1R15AO75807 674 aaPredicted RBP18.6■□□□□ 0.57
SHMT2-214ENST00000554604 SCAF1Q9H7N4 1312 aaKnown RBP18.59■□□□□ 0.57
SHMT2-214ENST00000554604 TOM1O60784 492 aa18.59■□□□□ 0.57
SHMT2-214ENST00000554604 TRIM52Q96A61 297 aa18.59■□□□□ 0.57
SHMT2-214ENST00000554604 RIMS2Q9UQ26 1411 aa18.58■□□□□ 0.57
SHMT2-214ENST00000554604 SLC26A8Q96RN1 970 aa18.58■□□□□ 0.56
SHMT2-214ENST00000554604 SENP3Q9H4L4 574 aaPredicted RBP18.57■□□□□ 0.56
SHMT2-214ENST00000554604 LRRC7Q96NW7 1537 aa18.57■□□□□ 0.56
SHMT2-214ENST00000554604 ZFYVE9O95405 1425 aa18.57■□□□□ 0.56
SHMT2-214ENST00000554604 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.56■□□□□ 0.56
SHMT2-214ENST00000554604 PIP4K2BP78356 416 aa18.55■□□□□ 0.56
SHMT2-214ENST00000554604 PLEKHG1Q9ULL1 1385 aa18.54■□□□□ 0.56
SHMT2-214ENST00000554604 KIF1BO60333 1816 aa18.52■□□□□ 0.56
SHMT2-214ENST00000554604 XIRP1Q702N8 1843 aaKnown RBP18.52■□□□□ 0.56
SHMT2-214ENST00000554604 NUTM2DQ5VT03 806 aaPredicted RBP18.52■□□□□ 0.56
SHMT2-214ENST00000554604 KCNA6P17658 529 aa18.51■□□□□ 0.55
SHMT2-214ENST00000554604 SLC4A1APQ9BWU0 796 aaKnown RBP18.51■□□□□ 0.55
SHMT2-214ENST00000554604 ZNF326Q5BKZ1 582 aaKnown RBP18.5■□□□□ 0.55
SHMT2-214ENST00000554604 TRPM2O94759 1503 aa18.49■□□□□ 0.55
SHMT2-214ENST00000554604 CLTCL1P53675 1640 aa18.49■□□□□ 0.55
SHMT2-214ENST00000554604 CHD2O14647 1828 aaKnown RBP18.49■□□□□ 0.55
SHMT2-214ENST00000554604 PROSER2Q86WR7 435 aaPredicted RBP18.48■□□□□ 0.55
SHMT2-214ENST00000554604 NWD1Q149M9 1564 aa18.47■□□□□ 0.55
SHMT2-214ENST00000554604 TBX22Q9Y458 520 aa18.46■□□□□ 0.55
SHMT2-214ENST00000554604 NKTRP30414 1462 aaKnown RBP18.46■□□□□ 0.54
SHMT2-214ENST00000554604 ALKQ9UM73 1620 aa18.45■□□□□ 0.54
SHMT2-214ENST00000554604 TMEM94Q12767 1356 aa18.45■□□□□ 0.54
SHMT2-214ENST00000554604 DIP2AQ14689 1571 aa18.45■□□□□ 0.54
SHMT2-214ENST00000554604 HSPA1LP34931 641 aa18.43■□□□□ 0.54
SHMT2-214ENST00000554604 RBM33Q96EV2 1170 aaKnown RBP18.42■□□□□ 0.54
SHMT2-214ENST00000554604 DISP3Q9P2K9 1392 aa18.42■□□□□ 0.54
SHMT2-214ENST00000554604 ADAMTS13Q76LX8 1427 aa18.41■□□□□ 0.54
SHMT2-214ENST00000554604 ACIN1Q9UKV3 1341 aaKnown RBP18.4■□□□□ 0.54
SHMT2-214ENST00000554604 SETD5Q9C0A6 1442 aa18.4■□□□□ 0.54
SHMT2-214ENST00000554604 FOXD1Q16676 465 aa18.39■□□□□ 0.53
SHMT2-214ENST00000554604 PIK3R4Q99570 1358 aa18.39■□□□□ 0.53
SHMT2-214ENST00000554604 NEXMIFQ5QGS0 1516 aa18.39■□□□□ 0.53
SHMT2-214ENST00000554604 MPHOSPH9Q99550 1183 aa18.38■□□□□ 0.53
SHMT2-214ENST00000554604 MSH6P52701 1360 aa18.38■□□□□ 0.53
SHMT2-214ENST00000554604 SETBP1Q9Y6X0 1596 aa18.38■□□□□ 0.53
SHMT2-214ENST00000554604 C14orf37Q86TY3 774 aa18.37■□□□□ 0.53
SHMT2-214ENST00000554604 NRXN3Q9Y4C0 1643 aa18.37■□□□□ 0.53
SHMT2-214ENST00000554604 AMOTL2Q9Y2J4 779 aa18.35■□□□□ 0.53
SHMT2-214ENST00000554604 CCDC144AA2RUR9 1427 aa18.34■□□□□ 0.53
SHMT2-214ENST00000554604 VGFO15240 615 aaPredicted RBP18.34■□□□□ 0.53
SHMT2-214ENST00000554604 PPLO60437 1756 aa18.33■□□□□ 0.53
SHMT2-214ENST00000554604 RPGRIP1LQ68CZ1 1315 aa18.32■□□□□ 0.52
SHMT2-214ENST00000554604 ZEB1P37275 1124 aaPredicted RBP18.32■□□□□ 0.52
SHMT2-214ENST00000554604 NCOA3Q9Y6Q9 1424 aa18.32■□□□□ 0.52
SHMT2-214ENST00000554604 ROBO1Q9Y6N7 1651 aa18.31■□□□□ 0.52
SHMT2-214ENST00000554604 RAB3GAP2Q9H2M9 1393 aa18.31■□□□□ 0.52
SHMT2-214ENST00000554604 FAM135BQ49AJ0 1406 aa18.31■□□□□ 0.52
SHMT2-214ENST00000554604 PTPRUQ92729 1446 aa18.31■□□□□ 0.52
SHMT2-214ENST00000554604 XRN1Q8IZH2 1706 aaKnown RBP18.3■□□□□ 0.52
SHMT2-214ENST00000554604 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.29■□□□□ 0.52
SHMT2-214ENST00000554604 SLAIN2Q9P270 581 aa18.29■□□□□ 0.52
SHMT2-214ENST00000554604 METP08581 1390 aa18.29■□□□□ 0.52
SHMT2-214ENST00000554604 RGL3Q3MIN7 710 aa18.28■□□□□ 0.52
SHMT2-214ENST00000554604 C19orf44Q9H6X5 657 aa18.28■□□□□ 0.52
SHMT2-214ENST00000554604 ATF3P18847 181 aa18.27■□□□□ 0.52
SHMT2-214ENST00000554604 CADPS2Q86UW7 1296 aa18.26■□□□□ 0.51
SHMT2-214ENST00000554604 MED1Q15648 1581 aaPredicted RBP18.25■□□□□ 0.51
SHMT2-214ENST00000554604 SETD1AO15047 1707 aaKnown RBP18.25■□□□□ 0.51
SHMT2-214ENST00000554604 SPATA31E1Q6ZUB1 1445 aa18.23■□□□□ 0.51
SHMT2-214ENST00000554604 IFT172Q9UG01 1749 aa18.23■□□□□ 0.51
SHMT2-214ENST00000554604 PHLPP1O60346 1717 aa18.23■□□□□ 0.51
SHMT2-214ENST00000554604 ANKRD30BQ9BXX2 1392 aa18.22■□□□□ 0.51
SHMT2-214ENST00000554604 ILDR2Q71H61 639 aa18.2■□□□□ 0.5
SHMT2-214ENST00000554604 DCCP43146 1447 aa18.2■□□□□ 0.5
SHMT2-214ENST00000554604 PHF23Q9BUL5 403 aaPredicted RBP18.19■□□□□ 0.5
SHMT2-214ENST00000554604 ADGRF5Q8IZF2 1346 aa18.19■□□□□ 0.5
SHMT2-214ENST00000554604 NALCNQ8IZF0 1738 aa18.18■□□□□ 0.5
SHMT2-214ENST00000554604 ADGRL3Q9HAR2 1447 aa18.17■□□□□ 0.5
SHMT2-214ENST00000554604 PTCH1Q13635 1447 aa18.16■□□□□ 0.5
SHMT2-214ENST00000554604 ROBO2Q9HCK4 1378 aa18.15■□□□□ 0.5
SHMT2-214ENST00000554604 PIK3C2GO75747 1445 aa18.13■□□□□ 0.49
SHMT2-214ENST00000554604 BRINP3Q76B58 766 aa18.12■□□□□ 0.49
SHMT2-214ENST00000554604 STK26Q9P289 416 aa18.12■□□□□ 0.49
SHMT2-214ENST00000554604 MST1RQ04912 1400 aa18.12■□□□□ 0.49
SHMT2-214ENST00000554604 PRAG1Q86YV5 1406 aa18.12■□□□□ 0.49
SHMT2-214ENST00000554604 COL16A1Q07092 1604 aaPredicted RBP18.12■□□□□ 0.49
SHMT2-214ENST00000554604 JCADQ9P266 1359 aa18.11■□□□□ 0.49
SHMT2-214ENST00000554604 AHDC1Q5TGY3 1603 aaPredicted RBP18.11■□□□□ 0.49
SHMT2-214ENST00000554604 TMEM132EQ6IEE7 984 aa18.1■□□□□ 0.49
SHMT2-214ENST00000554604 LAMC1P11047 1609 aa18.09■□□□□ 0.49
SHMT2-214ENST00000554604 ASXL1Q8IXJ9 1541 aa18.09■□□□□ 0.49
SHMT2-214ENST00000554604 MYOM2P54296 1465 aa18.09■□□□□ 0.49
SHMT2-214ENST00000554604 LRPPRCP42704 1394 aaKnown RBP18.08■□□□□ 0.49
SHMT2-214ENST00000554604 KNDC1Q76NI1 1749 aa18.08■□□□□ 0.48
SHMT2-214ENST00000554604 NHSL1Q5SYE7 1610 aa18.06■□□□□ 0.48
SHMT2-214ENST00000554604 SOCS7O14512 581 aa18.06■□□□□ 0.48
SHMT2-214ENST00000554604 CCER1Q8TC90 406 aaPredicted RBP18.06■□□□□ 0.48
SHMT2-214ENST00000554604 C14orf93Q9H972 538 aaKnown RBP18.06■□□□□ 0.48
SHMT2-214ENST00000554604 NRXN1Q9ULB1 1477 aa18.06■□□□□ 0.48
SHMT2-214ENST00000554604 TECPR2O15040 1411 aa18.06■□□□□ 0.48
SHMT2-214ENST00000554604 YTHDC2Q9H6S0 1430 aaKnown RBP18.06■□□□□ 0.48
SHMT2-214ENST00000554604 ABCC11Q96J66 1382 aa18.05■□□□□ 0.48
SHMT2-214ENST00000554604 CFAP70Q5T0N1 1121 aa18.05■□□□□ 0.48
SHMT2-214ENST00000554604 C1orf167Q5SNV9 1468 aa18.05■□□□□ 0.48
SHMT2-214ENST00000554604 SHPRHQ149N8 1683 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms