RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 TNFRSF10AO00220 468 aa10.73□□□□□ -0.69
PRKDC-210ENST00000541488 HDGFP51858 240 aaKnown RBP10.73□□□□□ -0.69
PRKDC-210ENST00000541488 WFS1O76024 890 aa10.72□□□□□ -0.69
PRKDC-210ENST00000541488 ZNF697Q5TEC3 545 aa10.71□□□□□ -0.69
PRKDC-210ENST00000541488 NUDT18Q6ZVK8 323 aa10.71□□□□□ -0.69
PRKDC-210ENST00000541488 GDF9O60383 454 aa10.7□□□□□ -0.7
PRKDC-210ENST00000541488 NECTIN2Q92692 538 aa10.7□□□□□ -0.7
PRKDC-210ENST00000541488 LIAT1Q6ZQX7 453 aa10.69□□□□□ -0.7
PRKDC-210ENST00000541488 CERKQ8TCT0 537 aa10.69□□□□□ -0.7
PRKDC-210ENST00000541488 SWT1Q5T5J6 900 aaKnown RBP10.68□□□□□ -0.7
PRKDC-210ENST00000541488 LOC100996750A0A140TA64 210 aa10.67□□□□□ -0.7
PRKDC-210ENST00000541488 PRIM1P49642 420 aaKnown RBP10.67□□□□□ -0.7
PRKDC-210ENST00000541488 ANKLE1Q8NAG6 615 aa10.67□□□□□ -0.7
PRKDC-210ENST00000541488 KRTAP4-6Q9BYQ5 205 aa10.67□□□□□ -0.7
PRKDC-210ENST00000541488 PPEF1O14829 653 aaPredicted RBP10.66□□□□□ -0.7
PRKDC-210ENST00000541488 TLL1O43897 1013 aa10.66□□□□□ -0.7
PRKDC-210ENST00000541488 SLF2Q8IX21 1173 aa10.66□□□□□ -0.7
PRKDC-210ENST00000541488 PCDHB3Q9Y5E6 796 aa10.65□□□□□ -0.7
PRKDC-210ENST00000541488 WIPF1O43516 503 aa10.64□□□□□ -0.71
PRKDC-210ENST00000541488 PDIA6Q15084 440 aa10.64□□□□□ -0.71
PRKDC-210ENST00000541488 BLOC1S3Q6QNY0 202 aa10.64□□□□□ -0.71
PRKDC-210ENST00000541488 KCNV2Q8TDN2 545 aa10.64□□□□□ -0.71
PRKDC-210ENST00000541488 DACH1Q9UI36 760 aa10.64□□□□□ -0.71
PRKDC-210ENST00000541488 INSM1Q01101 510 aaPredicted RBP10.63□□□□□ -0.71
PRKDC-210ENST00000541488 NFX1Q12986 1120 aaKnown RBP10.63□□□□□ -0.71
PRKDC-210ENST00000541488 GRXCR2A6NFK2 248 aa10.62□□□□□ -0.71
PRKDC-210ENST00000541488 S1PR4O95977 384 aa10.61□□□□□ -0.71
PRKDC-210ENST00000541488 CDHR5Q9HBB8 845 aa10.6□□□□□ -0.71
PRKDC-210ENST00000541488 GMPR2Q9P2T1 348 aaKnown RBP10.6□□□□□ -0.71
PRKDC-210ENST00000541488 SPDYE16A6NNV3 312 aaPredicted RBP10.59□□□□□ -0.71
PRKDC-210ENST00000541488 CRIPAKQ8N1N5 446 aa10.59□□□□□ -0.71
PRKDC-210ENST00000541488 RBM27Q9P2N5 1060 aaKnown RBP10.59□□□□□ -0.71
PRKDC-210ENST00000541488 C11orf95C9JLR9 678 aaPredicted RBP10.58□□□□□ -0.72
PRKDC-210ENST00000541488 PRR14Q9BWN1 585 aa10.58□□□□□ -0.72
PRKDC-210ENST00000541488 KDM2AQ9Y2K7 1162 aa10.56□□□□□ -0.72
PRKDC-210ENST00000541488 ARIH1Q9Y4X5 557 aaPredicted RBP10.56□□□□□ -0.72
PRKDC-210ENST00000541488 PLA2G2CQ5R387 149 aa10.55□□□□□ -0.72
PRKDC-210ENST00000541488 LCE2CQ5TA81 110 aa10.55□□□□□ -0.72
PRKDC-210ENST00000541488 PKD2L1Q9P0L9 805 aa10.55□□□□□ -0.72
PRKDC-210ENST00000541488 SLC4A3P48751 1232 aa10.54□□□□□ -0.72
PRKDC-210ENST00000541488 TTC13Q8NBP0 860 aa10.54□□□□□ -0.72
PRKDC-210ENST00000541488 FOXC1Q12948 553 aa10.53□□□□□ -0.72
PRKDC-210ENST00000541488 ARHGEF1Q92888 912 aaKnown RBP10.53□□□□□ -0.72
PRKDC-210ENST00000541488 MLLT3P42568 568 aaPredicted RBP10.52□□□□□ -0.73
PRKDC-210ENST00000541488 PADI6Q6TGC4 694 aa10.52□□□□□ -0.73
PRKDC-210ENST00000541488 AXIN1O15169 862 aa10.51□□□□□ -0.73
PRKDC-210ENST00000541488 AVPP01185 164 aa10.51□□□□□ -0.73
PRKDC-210ENST00000541488 LMOD2Q6P5Q4 547 aa10.5□□□□□ -0.73
PRKDC-210ENST00000541488 P3H3Q8IVL6 736 aa10.5□□□□□ -0.73
PRKDC-210ENST00000541488 ADH1BP00325 375 aa10.48□□□□□ -0.73
PRKDC-210ENST00000541488 OSBPP22059 807 aa10.48□□□□□ -0.73
PRKDC-210ENST00000541488 SEMA3EO15041 775 aa10.47□□□□□ -0.73
PRKDC-210ENST00000541488 EYA1Q99502 592 aa10.47□□□□□ -0.73
PRKDC-210ENST00000541488 TOR4AQ9NXH8 423 aa10.46□□□□□ -0.73
PRKDC-210ENST00000541488 CTC1Q2NKJ3 1217 aa10.45□□□□□ -0.74
PRKDC-210ENST00000541488 SLC6A16Q9GZN6 736 aa10.45□□□□□ -0.74
PRKDC-210ENST00000541488 ACTN4O43707 911 aaKnown RBP10.44□□□□□ -0.74
PRKDC-210ENST00000541488 NPDC1Q9NQX5 325 aaPredicted RBP10.44□□□□□ -0.74
PRKDC-210ENST00000541488 TERTO14746 1132 aaKnown RBP10.43□□□□□ -0.74
PRKDC-210ENST00000541488 SMCPP49901 116 aaPredicted RBP10.43□□□□□ -0.74
PRKDC-210ENST00000541488 VSIG10Q8N0Z9 540 aa10.42□□□□□ -0.74
PRKDC-210ENST00000541488 SNRPBP14678 240 aaKnown RBP10.41□□□□□ -0.74
PRKDC-210ENST00000541488 KMT5BQ4FZB7 885 aa10.41□□□□□ -0.74
PRKDC-210ENST00000541488 CYP4X1Q8N118 509 aa10.41□□□□□ -0.74
PRKDC-210ENST00000541488 CFHP08603 1231 aa10.39□□□□□ -0.75
PRKDC-210ENST00000541488 NR1I2O75469 434 aa10.37□□□□□ -0.75
PRKDC-210ENST00000541488 FAM181BA6NEQ2 426 aa10.36□□□□□ -0.75
PRKDC-210ENST00000541488 DNAJB2P25686 324 aa10.36□□□□□ -0.75
PRKDC-210ENST00000541488 RPIAP49247 311 aa10.36□□□□□ -0.75
PRKDC-210ENST00000541488 ATP13A2Q9NQ11 1180 aa10.36□□□□□ -0.75
PRKDC-210ENST00000541488 NUTM2FA1L443 756 aa10.35□□□□□ -0.75
PRKDC-210ENST00000541488 TMEM134Q9H6X4 195 aa10.34□□□□□ -0.75
PRKDC-210ENST00000541488 TRIM47Q96LD4 638 aa10.33□□□□□ -0.76
PRKDC-210ENST00000541488 SUZ12Q15022 739 aaKnown RBP10.32□□□□□ -0.76
PRKDC-210ENST00000541488 RBM26Q5T8P6 1007 aaKnown RBP10.32□□□□□ -0.76
PRKDC-210ENST00000541488 TESPA1A2RU30 521 aaPredicted RBP10.31□□□□□ -0.76
PRKDC-210ENST00000541488 TTC24A2A3L6 582 aaPredicted RBP10.3□□□□□ -0.76
PRKDC-210ENST00000541488 CD2BP2O95400 341 aaKnown RBP10.3□□□□□ -0.76
PRKDC-210ENST00000541488 LORP23490 312 aaPredicted RBP10.3□□□□□ -0.76
PRKDC-210ENST00000541488 SCUBE3Q8IX30 993 aa10.3□□□□□ -0.76
PRKDC-210ENST00000541488 SLC10A3P09131 477 aa10.29□□□□□ -0.76
PRKDC-210ENST00000541488 SPSB2Q99619 263 aa10.29□□□□□ -0.76
PRKDC-210ENST00000541488 SENP2Q9HC62 589 aa10.29□□□□□ -0.76
PRKDC-210ENST00000541488 FCF1Q9Y324 198 aaKnown RBP10.29□□□□□ -0.76
PRKDC-210ENST00000541488 ZSCAN1Q8NBB4 408 aa10.28□□□□□ -0.76
PRKDC-210ENST00000541488 SMPD1P17405 629 aa10.27□□□□□ -0.77
PRKDC-210ENST00000541488 PTGDRQ13258 359 aa10.27□□□□□ -0.77
PRKDC-210ENST00000541488 FAM161AQ3B820 660 aa10.26□□□□□ -0.77
PRKDC-210ENST00000541488 PUS10Q3MIT2 529 aaKnown RBP10.26□□□□□ -0.77
PRKDC-210ENST00000541488 SMYD5Q6GMV2 418 aa10.26□□□□□ -0.77
PRKDC-210ENST00000541488 RBM46Q8TBY0 533 aaKnown RBP10.26□□□□□ -0.77
PRKDC-210ENST00000541488 GMPRP36959 345 aa10.25□□□□□ -0.77
PRKDC-210ENST00000541488 RCCD1A6NED2 376 aa10.24□□□□□ -0.77
PRKDC-210ENST00000541488 SLC16A10Q8TF71 515 aa10.23□□□□□ -0.77
PRKDC-210ENST00000541488 ADGRG1Q9Y653 693 aa10.23□□□□□ -0.77
PRKDC-210ENST00000541488 KIFC2Q96AC6 838 aa10.22□□□□□ -0.77
PRKDC-210ENST00000541488 FCHSD2O94868 740 aa10.21□□□□□ -0.77
PRKDC-210ENST00000541488 SNIP1Q8TAD8 396 aaKnown RBP10.21□□□□□ -0.77
PRKDC-210ENST00000541488 J3QL48 77 aa10.18□□□□□ -0.78
PRKDC-210ENST00000541488 WNT7AO00755 349 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms