RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 IQGAP3Q86VI3 1631 aa18.48■□□□□ 0.55
USP48-213ENST00000529637 CDCA8Q53HL2 280 aa18.47■□□□□ 0.55
USP48-213ENST00000529637 PLXNC1O60486 1568 aa18.47■□□□□ 0.55
USP48-213ENST00000529637 E9PCH4 1651 aa18.47■□□□□ 0.55
USP48-213ENST00000529637 KANK1Q14678 1352 aa18.47■□□□□ 0.55
USP48-213ENST00000529637 PRDM15P57071 1507 aaPredicted RBP18.46■□□□□ 0.55
USP48-213ENST00000529637 RGS3P49796 1198 aa18.46■□□□□ 0.55
USP48-213ENST00000529637 FAM161AQ3B820 660 aa18.45■□□□□ 0.54
USP48-213ENST00000529637 SHROOM2Q13796 1616 aa18.45■□□□□ 0.54
USP48-213ENST00000529637 EIF2AK4Q9P2K8 1649 aaKnown RBP18.45■□□□□ 0.54
USP48-213ENST00000529637 PPP2R1AP30153 589 aa18.45■□□□□ 0.54
USP48-213ENST00000529637 ZCCHC11Q5TAX3 1644 aaKnown RBP18.44■□□□□ 0.54
USP48-213ENST00000529637 CFAP70Q5T0N1 1121 aa18.43■□□□□ 0.54
USP48-213ENST00000529637 CCDC146Q8IYE0 955 aa18.43■□□□□ 0.54
USP48-213ENST00000529637 FAM43AQ8N2R8 423 aa18.43■□□□□ 0.54
USP48-213ENST00000529637 SCAPERQ9BY12 1400 aa18.43■□□□□ 0.54
USP48-213ENST00000529637 POGKQ9P215 609 aa18.42■□□□□ 0.54
USP48-213ENST00000529637 ABCC1P33527 1531 aa18.41■□□□□ 0.54
USP48-213ENST00000529637 CENPQQ7L2Z9 268 aaPredicted RBP18.41■□□□□ 0.54
USP48-213ENST00000529637 RSPH6AQ9H0K4 717 aa18.4■□□□□ 0.54
USP48-213ENST00000529637 ATP10AO60312 1499 aa18.4■□□□□ 0.54
USP48-213ENST00000529637 AMER1Q5JTC6 1135 aaPredicted RBP18.38■□□□□ 0.53
USP48-213ENST00000529637 RRAGDQ9NQL2 400 aaPredicted RBP18.38■□□□□ 0.53
USP48-213ENST00000529637 MAGI2Q86UL8 1455 aa18.38■□□□□ 0.53
USP48-213ENST00000529637 SENP3Q9H4L4 574 aaPredicted RBP18.37■□□□□ 0.53
USP48-213ENST00000529637 EIF3AQ14152 1382 aaKnown RBP18.37■□□□□ 0.53
USP48-213ENST00000529637 FANCAO15360 1455 aa18.36■□□□□ 0.53
USP48-213ENST00000529637 SCAF11Q99590 1463 aaKnown RBP18.36■□□□□ 0.53
USP48-213ENST00000529637 TNNT2P45379 298 aaPredicted RBP18.35■□□□□ 0.53
USP48-213ENST00000529637 GOLGA2Q08379 1002 aa18.35■□□□□ 0.53
USP48-213ENST00000529637 GGT6Q6P531 493 aa18.35■□□□□ 0.53
USP48-213ENST00000529637 ADGRF5Q8IZF2 1346 aa18.35■□□□□ 0.53
USP48-213ENST00000529637 BLMP54132 1417 aaPredicted RBP18.35■□□□□ 0.53
USP48-213ENST00000529637 WDR7Q9Y4E6 1490 aa18.35■□□□□ 0.53
USP48-213ENST00000529637 LAMC1P11047 1609 aa18.34■□□□□ 0.53
USP48-213ENST00000529637 ARXQ96QS3 562 aa18.34■□□□□ 0.53
USP48-213ENST00000529637 DUSP27Q5VZP5 1158 aa18.33■□□□□ 0.53
USP48-213ENST00000529637 SEC24BO95487 1268 aa18.33■□□□□ 0.52
USP48-213ENST00000529637 NPM1P06748 294 aaKnown RBP eCLIP18.33■□□□□ 0.52
USP48-213ENST00000529637 PLEKHH1Q9ULM0 1364 aa18.33■□□□□ 0.52
USP48-213ENST00000529637 APAF1O14727 1248 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 STAC3Q96MF2 364 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 UHRF1BP1LA0JNW5 1464 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 RTEL1-TNFRSF6BF6WH68 1400 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 USP19O94966 1318 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 ADGRL1O94910 1474 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 ZFYVE16Q7Z3T8 1539 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 SLKQ9H2G2 1235 aaPredicted RBP18.32■□□□□ 0.52
USP48-213ENST00000529637 TRAK1Q9UPV9 953 aa18.32■□□□□ 0.52
USP48-213ENST00000529637 TRPM2O94759 1503 aa18.31■□□□□ 0.52
USP48-213ENST00000529637 MADDQ8WXG6 1647 aa18.3■□□□□ 0.52
USP48-213ENST00000529637 CLTCL1P53675 1640 aa18.29■□□□□ 0.52
USP48-213ENST00000529637 ZMYM4Q5VZL5 1548 aa18.29■□□□□ 0.52
USP48-213ENST00000529637 UGGT1Q9NYU2 1555 aa18.29■□□□□ 0.52
USP48-213ENST00000529637 NEUROD2Q15784 382 aa18.29■□□□□ 0.52
USP48-213ENST00000529637 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.29■□□□□ 0.52
USP48-213ENST00000529637 ATP7AQ04656 1500 aa18.29■□□□□ 0.52
USP48-213ENST00000529637 NUTM2DQ5VT03 806 aaPredicted RBP18.28■□□□□ 0.52
USP48-213ENST00000529637 PTPRTO14522 1441 aa18.28■□□□□ 0.52
USP48-213ENST00000529637 IGHDP01880 384 aa18.27■□□□□ 0.52
USP48-213ENST00000529637 CLASP1Q7Z460 1538 aa18.27■□□□□ 0.52
USP48-213ENST00000529637 ASXL1Q8IXJ9 1541 aa18.27■□□□□ 0.52
USP48-213ENST00000529637 RNF17Q9BXT8 1623 aaKnown RBP18.26■□□□□ 0.51
USP48-213ENST00000529637 TMEM132EQ6IEE7 984 aa18.26■□□□□ 0.51
USP48-213ENST00000529637 SPHKAPQ2M3C7 1700 aa18.26■□□□□ 0.51
USP48-213ENST00000529637 SPINK5Q9NQ38 1064 aaPredicted RBP18.25■□□□□ 0.51
USP48-213ENST00000529637 BCAR3O75815 825 aa18.25■□□□□ 0.51
USP48-213ENST00000529637 CARD14Q9BXL6 1004 aa18.24■□□□□ 0.51
USP48-213ENST00000529637 CANXP27824 592 aaKnown RBP18.24■□□□□ 0.51
USP48-213ENST00000529637 MORC1Q86VD1 984 aa18.23■□□□□ 0.51
USP48-213ENST00000529637 CENPJQ9HC77 1338 aaPredicted RBP18.23■□□□□ 0.51
USP48-213ENST00000529637 SLC24A1O60721 1099 aa18.23■□□□□ 0.51
USP48-213ENST00000529637 ASXL2Q76L83 1435 aa18.23■□□□□ 0.51
USP48-213ENST00000529637 INSRP06213 1382 aa18.23■□□□□ 0.51
USP48-213ENST00000529637 CFAP65Q6ZU64 1925 aaKnown RBP18.23■□□□□ 0.51
USP48-213ENST00000529637 SLFN5Q08AF3 891 aa18.22■□□□□ 0.51
USP48-213ENST00000529637 IQGAP1P46940 1657 aa18.22■□□□□ 0.51
USP48-213ENST00000529637 ZNF521Q96K83 1311 aa18.22■□□□□ 0.51
USP48-213ENST00000529637 SAFB2Q14151 953 aaKnown RBP eCLIP18.21■□□□□ 0.511e-6■■■□□ 15.2
USP48-213ENST00000529637 SLC12A5Q9H2X9 1139 aa18.21■□□□□ 0.51
USP48-213ENST00000529637 RRP7AQ9Y3A4 280 aaKnown RBP18.21■□□□□ 0.51
USP48-213ENST00000529637 TET3O43151 1660 aa18.21■□□□□ 0.51
USP48-213ENST00000529637 NOS1P29475 1434 aa18.2■□□□□ 0.5
USP48-213ENST00000529637 CEP152O94986 1710 aa18.2■□□□□ 0.5
USP48-213ENST00000529637 SYNMO15061 1565 aa18.2■□□□□ 0.5
USP48-213ENST00000529637 PANK2Q9BZ23 570 aa18.19■□□□□ 0.5
USP48-213ENST00000529637 PIK3C2GO75747 1445 aa18.19■□□□□ 0.5
USP48-213ENST00000529637 XRCC6P12956 609 aaKnown RBP eCLIP18.19■□□□□ 0.57e-11■■□□□ 12.1
USP48-213ENST00000529637 PKNOX2Q96KN3 472 aa18.19■□□□□ 0.5
USP48-213ENST00000529637 SPRYD3Q8NCJ5 442 aa18.18■□□□□ 0.5
USP48-213ENST00000529637 GZF1Q9H116 711 aaPredicted RBP18.18■□□□□ 0.5
USP48-213ENST00000529637 ANTXR1Q9H6X2 564 aa18.18■□□□□ 0.5
USP48-213ENST00000529637 ARAP3Q8WWN8 1544 aa18.18■□□□□ 0.5
USP48-213ENST00000529637 DMRT2Q9Y5R5 561 aa18.17■□□□□ 0.5
USP48-213ENST00000529637 ERVK-7P63135 1459 aa18.16■□□□□ 0.5
USP48-213ENST00000529637 E9PSI1 815 aa18.16■□□□□ 0.5
USP48-213ENST00000529637 NAP1L5Q96NT1 182 aaPredicted RBP18.15■□□□□ 0.5
USP48-213ENST00000529637 KDM5AP29375 1690 aaKnown RBP18.15■□□□□ 0.5
USP48-213ENST00000529637 INO80Q9ULG1 1556 aaPredicted RBP18.15■□□□□ 0.5
USP48-213ENST00000529637 NSD3Q9BZ95 1437 aa18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms