RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 TSR3Q9UJK0 312 aaKnown RBP10.02□□□□□ -0.81
CD44-217ENST00000525348 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.01□□□□□ -0.81
CD44-217ENST00000525348 MINK1Q8N4C8 1332 aaPredicted RBP10.01□□□□□ -0.81
CD44-217ENST00000525348 RNF40O75150 1001 aa9.99□□□□□ -0.81
CD44-217ENST00000525348 HDGFP51858 240 aaKnown RBP9.97□□□□□ -0.81
CD44-217ENST00000525348 PPP4CP60510 307 aa9.97□□□□□ -0.81
CD44-217ENST00000525348 SLF2Q8IX21 1173 aa9.97□□□□□ -0.81
CD44-217ENST00000525348 SLC10A3P09131 477 aa9.96□□□□□ -0.82
CD44-217ENST00000525348 APLP1P51693 650 aa9.95□□□□□ -0.82
CD44-217ENST00000525348 KRI1Q8N9T8 703 aaKnown RBP9.95□□□□□ -0.82
CD44-217ENST00000525348 DAXXQ9UER7 740 aaPredicted RBP9.93□□□□□ -0.82
CD44-217ENST00000525348 NYAP1Q6ZVC0 841 aa9.92□□□□□ -0.82
CD44-217ENST00000525348 MDM2Q00987 491 aaPredicted RBP9.91□□□□□ -0.82
CD44-217ENST00000525348 TMUB1Q9BVT8 246 aa9.9□□□□□ -0.82
CD44-217ENST00000525348 REPIN1Q9BWE0 567 aaKnown RBP9.9□□□□□ -0.82
CD44-217ENST00000525348 SLC24A3Q9HC58 644 aa9.9□□□□□ -0.82
CD44-217ENST00000525348 PLA2G2EQ9NZK7 142 aa9.9□□□□□ -0.82
CD44-217ENST00000525348 DDX11L8A8MPP1 907 aa9.88□□□□□ -0.83
CD44-217ENST00000525348 CFHP08603 1231 aa9.88□□□□□ -0.83
CD44-217ENST00000525348 TRIM66O15016 1216 aa9.87□□□□□ -0.83
CD44-217ENST00000525348 ITGBL1O95965 494 aaPredicted RBP9.87□□□□□ -0.83
CD44-217ENST00000525348 SLC4A3P48751 1232 aa9.87□□□□□ -0.83
CD44-217ENST00000525348 AMHR2Q16671 573 aa9.86□□□□□ -0.83
CD44-217ENST00000525348 TJAP1Q5JTD0 557 aa9.86□□□□□ -0.83
CD44-217ENST00000525348 AK7Q96M32 723 aa9.86□□□□□ -0.83
CD44-217ENST00000525348 RDH13Q8NBN7 331 aa9.85□□□□□ -0.83
CD44-217ENST00000525348 NECTIN2Q92692 538 aa9.85□□□□□ -0.83
CD44-217ENST00000525348 MTRQ99707 1265 aa9.85□□□□□ -0.83
CD44-217ENST00000525348 GPCPD1Q9NPB8 672 aa9.84□□□□□ -0.83
CD44-217ENST00000525348 ACTN4O43707 911 aaKnown RBP9.83□□□□□ -0.84
CD44-217ENST00000525348 CD46P15529 392 aa9.83□□□□□ -0.84
CD44-217ENST00000525348 CLCN1P35523 988 aa9.83□□□□□ -0.84
CD44-217ENST00000525348 FAM217BQ9NTX9 383 aaPredicted RBP9.83□□□□□ -0.84
CD44-217ENST00000525348 COPS2P61201 443 aa9.82□□□□□ -0.84
CD44-217ENST00000525348 KMT5BQ4FZB7 885 aa9.82□□□□□ -0.84
CD44-217ENST00000525348 SULF1Q8IWU6 871 aa9.82□□□□□ -0.84
CD44-217ENST00000525348 PARP9Q8IXQ6 854 aa9.82□□□□□ -0.84
CD44-217ENST00000525348 ZNF516Q92618 1163 aa9.82□□□□□ -0.84
CD44-217ENST00000525348 GCGRP47871 477 aa9.81□□□□□ -0.84
CD44-217ENST00000525348 BLOC1S3Q6QNY0 202 aa9.81□□□□□ -0.84
CD44-217ENST00000525348 PCDHB3Q9Y5E6 796 aa9.81□□□□□ -0.84
CD44-217ENST00000525348 TTLL12Q14166 644 aaPredicted RBP9.8□□□□□ -0.84
CD44-217ENST00000525348 IFFO2Q5TF58 517 aa9.8□□□□□ -0.84
CD44-217ENST00000525348 KCNC4Q03721 635 aa9.79□□□□□ -0.84
CD44-217ENST00000525348 PDE4DQ08499 809 aa9.79□□□□□ -0.84
CD44-217ENST00000525348 PUS10Q3MIT2 529 aaKnown RBP9.79□□□□□ -0.84
CD44-217ENST00000525348 GIGYF2Q6Y7W6 1299 aaKnown RBP9.79□□□□□ -0.84
CD44-217ENST00000525348 PRR14Q9BWN1 585 aa9.79□□□□□ -0.84
CD44-217ENST00000525348 IL21Q9HBE4 155 aa9.79□□□□□ -0.84
CD44-217ENST00000525348 FUT2Q10981 343 aa9.78□□□□□ -0.84
CD44-217ENST00000525348 RSPH4AQ5TD94 716 aa9.78□□□□□ -0.84
CD44-217ENST00000525348 NKX2-3Q8TAU0 364 aa9.77□□□□□ -0.85
CD44-217ENST00000525348 SSTR3P32745 418 aaPredicted RBP9.76□□□□□ -0.85
CD44-217ENST00000525348 TPRNQ4KMQ1 711 aa9.76□□□□□ -0.85
CD44-217ENST00000525348 MS4A1P11836 297 aa9.75□□□□□ -0.85
CD44-217ENST00000525348 A0A0G2JS52 829 aa9.74□□□□□ -0.85
CD44-217ENST00000525348 TLL1O43897 1013 aa9.74□□□□□ -0.85
CD44-217ENST00000525348 ZPR1O75312 459 aa9.74□□□□□ -0.85
CD44-217ENST00000525348 MORN1Q5T089 497 aa9.74□□□□□ -0.85
CD44-217ENST00000525348 HLA-CQ95604 372 aa9.73□□□□□ -0.85
CD44-217ENST00000525348 KDM4AO75164 1064 aa9.72□□□□□ -0.85
CD44-217ENST00000525348 ATP6V1AP38606 617 aa9.72□□□□□ -0.85
CD44-217ENST00000525348 SCUBE3Q8IX30 993 aa9.71□□□□□ -0.86
CD44-217ENST00000525348 SLC27A5Q9Y2P5 690 aa9.71□□□□□ -0.86
CD44-217ENST00000525348 GPBP1L1Q9HC44 474 aaPredicted RBP9.7□□□□□ -0.86
CD44-217ENST00000525348 HOXA2O43364 376 aa9.69□□□□□ -0.86
CD44-217ENST00000525348 NR1I2O75469 434 aa9.69□□□□□ -0.86
CD44-217ENST00000525348 PRKCSHP14314 528 aaPredicted RBP9.69□□□□□ -0.86
CD44-217ENST00000525348 GUCA2AQ02747 115 aa9.69□□□□□ -0.86
CD44-217ENST00000525348 BEGAINQ9BUH8 593 aa9.69□□□□□ -0.86
CD44-217ENST00000525348 SPIRE2Q8WWL2 714 aa9.68□□□□□ -0.86
CD44-217ENST00000525348 THAP11Q96EK4 314 aa9.68□□□□□ -0.86
CD44-217ENST00000525348 USP46P62068 366 aa9.66□□□□□ -0.86
CD44-217ENST00000525348 PPP1R18Q6NYC8 613 aa9.66□□□□□ -0.86
CD44-217ENST00000525348 RNF19BQ6ZMZ0 732 aa9.66□□□□□ -0.86
CD44-217ENST00000525348 ADH1BP00325 375 aa9.65□□□□□ -0.86
CD44-217ENST00000525348 NUTM1Q86Y26 1132 aa9.65□□□□□ -0.86
CD44-217ENST00000525348 BRICD5Q6PL45 260 aa9.64□□□□□ -0.87
CD44-217ENST00000525348 TBC1D2Q9BYX2 928 aa9.64□□□□□ -0.87
CD44-217ENST00000525348 KDM4CQ9H3R0 1056 aa9.64□□□□□ -0.87
CD44-217ENST00000525348 MOXD2PA6NHM9 499 aa9.63□□□□□ -0.87
CD44-217ENST00000525348 NDUFV2P19404 249 aa9.63□□□□□ -0.87
CD44-217ENST00000525348 GRIPAP1Q4V328 841 aa9.63□□□□□ -0.87
CD44-217ENST00000525348 PCDHGC3Q9UN70 934 aa9.63□□□□□ -0.87
CD44-217ENST00000525348 S1PR4O95977 384 aa9.62□□□□□ -0.87
CD44-217ENST00000525348 FAM160A2Q8N612 972 aaPredicted RBP9.62□□□□□ -0.87
CD44-217ENST00000525348 SPSB2Q99619 263 aa9.62□□□□□ -0.87
CD44-217ENST00000525348 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.62□□□□□ -0.87
CD44-217ENST00000525348 FMNL1O95466 1100 aaPredicted RBP9.61□□□□□ -0.87
CD44-217ENST00000525348 SYMPKQ92797 1274 aaKnown RBP9.61□□□□□ -0.87
CD44-217ENST00000525348 PRDM9Q9NQV7 894 aa9.61□□□□□ -0.87
CD44-217ENST00000525348 SALL2Q9Y467 1007 aaPredicted RBP9.61□□□□□ -0.87
CD44-217ENST00000525348 PPEF1O14829 653 aaPredicted RBP9.6□□□□□ -0.87
CD44-217ENST00000525348 FDX1P10109 184 aa9.6□□□□□ -0.87
CD44-217ENST00000525348 FAM117AQ9C073 453 aa9.6□□□□□ -0.87
CD44-217ENST00000525348 RNF223E7ERA6 249 aa9.59□□□□□ -0.87
CD44-217ENST00000525348 SLC6A16Q9GZN6 736 aa9.59□□□□□ -0.87
CD44-217ENST00000525348 BRPF1P55201 1214 aaPredicted RBP9.58□□□□□ -0.88
CD44-217ENST00000525348 PLEKHG3A1L390 1219 aa9.57□□□□□ -0.88
CD44-217ENST00000525348 Q3C1V9 767 aa9.57□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms