RNA–Protein interactions for RNA: ENST00000523125.5

VEGFA-223, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 541 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-223ENST00000523125 CHD2O14647 1828 aaKnown RBP18.78■□□□□ 0.6
VEGFA-223ENST00000523125 PIP4K2BP78356 416 aa18.77■□□□□ 0.6
VEGFA-223ENST00000523125 HFM1A2PYH4 1435 aa18.76■□□□□ 0.59
VEGFA-223ENST00000523125 PLEKHG1Q9ULL1 1385 aa18.76■□□□□ 0.59
VEGFA-223ENST00000523125 NWD1Q149M9 1564 aa18.76■□□□□ 0.59
VEGFA-223ENST00000523125 CHGAP10645 457 aaKnown RBP18.75■□□□□ 0.59
VEGFA-223ENST00000523125 KCNA6P17658 529 aa18.74■□□□□ 0.59
VEGFA-223ENST00000523125 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
VEGFA-223ENST00000523125 HSPA1LP34931 641 aa18.73■□□□□ 0.59
VEGFA-223ENST00000523125 HDGFP51858 240 aaKnown RBP18.73■□□□□ 0.59
VEGFA-223ENST00000523125 SENP3Q9H4L4 574 aaPredicted RBP18.73■□□□□ 0.59
VEGFA-223ENST00000523125 CLTCL1P53675 1640 aa18.72■□□□□ 0.59
VEGFA-223ENST00000523125 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.71■□□□□ 0.59
VEGFA-223ENST00000523125 PPP1R15AO75807 674 aaPredicted RBP18.7■□□□□ 0.58
VEGFA-223ENST00000523125 NUTM2DQ5VT03 806 aaPredicted RBP18.7■□□□□ 0.58
VEGFA-223ENST00000523125 BCANQ96GW7 911 aa18.7■□□□□ 0.58
VEGFA-223ENST00000523125 NKTRP30414 1462 aaKnown RBP18.7■□□□□ 0.58
VEGFA-223ENST00000523125 KIF1BO60333 1816 aa18.7■□□□□ 0.58
VEGFA-223ENST00000523125 TRPM2O94759 1503 aa18.69■□□□□ 0.58
VEGFA-223ENST00000523125 TMEM94Q12767 1356 aa18.69■□□□□ 0.58
VEGFA-223ENST00000523125 DISP3Q9P2K9 1392 aa18.69■□□□□ 0.58
VEGFA-223ENST00000523125 ADAMTS13Q76LX8 1427 aa18.69■□□□□ 0.58
VEGFA-223ENST00000523125 TBX22Q9Y458 520 aa18.68■□□□□ 0.58
VEGFA-223ENST00000523125 DIP2AQ14689 1571 aa18.68■□□□□ 0.58
VEGFA-223ENST00000523125 PROSER2Q86WR7 435 aaPredicted RBP18.67■□□□□ 0.58
VEGFA-223ENST00000523125 RBM33Q96EV2 1170 aaKnown RBP18.67■□□□□ 0.58
VEGFA-223ENST00000523125 NRXN3Q9Y4C0 1643 aa18.67■□□□□ 0.58
VEGFA-223ENST00000523125 TRIM52Q96A61 297 aa18.66■□□□□ 0.58
VEGFA-223ENST00000523125 NEXMIFQ5QGS0 1516 aa18.63■□□□□ 0.57
VEGFA-223ENST00000523125 SETBP1Q9Y6X0 1596 aa18.63■□□□□ 0.57
VEGFA-223ENST00000523125 ILDR2Q71H61 639 aa18.62■□□□□ 0.57
VEGFA-223ENST00000523125 PIK3R4Q99570 1358 aa18.61■□□□□ 0.57
VEGFA-223ENST00000523125 SLC4A1APQ9BWU0 796 aaKnown RBP18.61■□□□□ 0.57
VEGFA-223ENST00000523125 ZNF326Q5BKZ1 582 aaKnown RBP18.6■□□□□ 0.57
VEGFA-223ENST00000523125 ROBO1Q9Y6N7 1651 aa18.6■□□□□ 0.57
VEGFA-223ENST00000523125 MED1Q15648 1581 aaPredicted RBP18.59■□□□□ 0.57
VEGFA-223ENST00000523125 FAM135BQ49AJ0 1406 aa18.59■□□□□ 0.57
VEGFA-223ENST00000523125 PTPRUQ92729 1446 aa18.59■□□□□ 0.57
VEGFA-223ENST00000523125 XRN1Q8IZH2 1706 aaKnown RBP18.58■□□□□ 0.57
VEGFA-223ENST00000523125 PPLO60437 1756 aa18.57■□□□□ 0.56
VEGFA-223ENST00000523125 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.57■□□□□ 0.56
VEGFA-223ENST00000523125 NCOA3Q9Y6Q9 1424 aa18.57■□□□□ 0.56
VEGFA-223ENST00000523125 MSH6P52701 1360 aa18.56■□□□□ 0.56
VEGFA-223ENST00000523125 SETD1AO15047 1707 aaKnown RBP18.55■□□□□ 0.56
VEGFA-223ENST00000523125 FOXD1Q16676 465 aa18.55■□□□□ 0.56
VEGFA-223ENST00000523125 AMOTL2Q9Y2J4 779 aa18.54■□□□□ 0.56
VEGFA-223ENST00000523125 METP08581 1390 aa18.54■□□□□ 0.56
VEGFA-223ENST00000523125 MPHOSPH9Q99550 1183 aa18.52■□□□□ 0.56
VEGFA-223ENST00000523125 SLAIN2Q9P270 581 aa18.52■□□□□ 0.56
VEGFA-223ENST00000523125 SETD5Q9C0A6 1442 aa18.5■□□□□ 0.55
VEGFA-223ENST00000523125 IFT172Q9UG01 1749 aa18.49■□□□□ 0.55
VEGFA-223ENST00000523125 C19orf44Q9H6X5 657 aa18.49■□□□□ 0.55
VEGFA-223ENST00000523125 PHLPP1O60346 1717 aa18.49■□□□□ 0.55
VEGFA-223ENST00000523125 RPGRIP1LQ68CZ1 1315 aa18.49■□□□□ 0.55
VEGFA-223ENST00000523125 VGFO15240 615 aaPredicted RBP18.48■□□□□ 0.55
VEGFA-223ENST00000523125 C14orf37Q86TY3 774 aa18.47■□□□□ 0.55
VEGFA-223ENST00000523125 SPATA31E1Q6ZUB1 1445 aa18.47■□□□□ 0.55
VEGFA-223ENST00000523125 CCDC144AA2RUR9 1427 aa18.46■□□□□ 0.55
VEGFA-223ENST00000523125 NALCNQ8IZF0 1738 aa18.46■□□□□ 0.55
VEGFA-223ENST00000523125 RAB3GAP2Q9H2M9 1393 aa18.44■□□□□ 0.54
VEGFA-223ENST00000523125 CADPS2Q86UW7 1296 aa18.44■□□□□ 0.54
VEGFA-223ENST00000523125 COL16A1Q07092 1604 aaPredicted RBP18.44■□□□□ 0.54
VEGFA-223ENST00000523125 ACIN1Q9UKV3 1341 aaKnown RBP18.44■□□□□ 0.54
VEGFA-223ENST00000523125 ATF3P18847 181 aa18.43■□□□□ 0.54
VEGFA-223ENST00000523125 DCCP43146 1447 aa18.42■□□□□ 0.54
VEGFA-223ENST00000523125 SOCS7O14512 581 aa18.42■□□□□ 0.54
VEGFA-223ENST00000523125 RGL3Q3MIN7 710 aa18.4■□□□□ 0.54
VEGFA-223ENST00000523125 AHDC1Q5TGY3 1603 aaPredicted RBP18.4■□□□□ 0.54
VEGFA-223ENST00000523125 ADGRF5Q8IZF2 1346 aa18.4■□□□□ 0.54
VEGFA-223ENST00000523125 PRAG1Q86YV5 1406 aa18.4■□□□□ 0.54
VEGFA-223ENST00000523125 ADGRL3Q9HAR2 1447 aa18.4■□□□□ 0.54
VEGFA-223ENST00000523125 ROBO2Q9HCK4 1378 aa18.38■□□□□ 0.53
VEGFA-223ENST00000523125 MST1RQ04912 1400 aa18.38■□□□□ 0.53
VEGFA-223ENST00000523125 PTCH1Q13635 1447 aa18.38■□□□□ 0.53
VEGFA-223ENST00000523125 PHF23Q9BUL5 403 aaPredicted RBP18.37■□□□□ 0.53
VEGFA-223ENST00000523125 NHSL1Q5SYE7 1610 aa18.36■□□□□ 0.53
VEGFA-223ENST00000523125 BRINP3Q76B58 766 aa18.36■□□□□ 0.53
VEGFA-223ENST00000523125 ANKRD30BQ9BXX2 1392 aa18.36■□□□□ 0.53
VEGFA-223ENST00000523125 RGS17Q9UGC6 210 aaPredicted RBP18.36■□□□□ 0.53
VEGFA-223ENST00000523125 ASXL1Q8IXJ9 1541 aa18.35■□□□□ 0.53
VEGFA-223ENST00000523125 SHPRHQ149N8 1683 aa18.34■□□□□ 0.53
VEGFA-223ENST00000523125 JCADQ9P266 1359 aa18.34■□□□□ 0.53
VEGFA-223ENST00000523125 PIK3C2GO75747 1445 aa18.33■□□□□ 0.53
VEGFA-223ENST00000523125 KNDC1Q76NI1 1749 aa18.32■□□□□ 0.52
VEGFA-223ENST00000523125 HRCP23327 699 aa18.31■□□□□ 0.52
VEGFA-223ENST00000523125 NRXN1Q9ULB1 1477 aa18.3■□□□□ 0.52
VEGFA-223ENST00000523125 C1orf167Q5SNV9 1468 aa18.29■□□□□ 0.52
VEGFA-223ENST00000523125 LAMC1P11047 1609 aa18.29■□□□□ 0.52
VEGFA-223ENST00000523125 TECPR2O15040 1411 aa18.29■□□□□ 0.52
VEGFA-223ENST00000523125 MYOM2P54296 1465 aa18.28■□□□□ 0.52
VEGFA-223ENST00000523125 TMEM132EQ6IEE7 984 aa18.28■□□□□ 0.52
VEGFA-223ENST00000523125 LRPPRCP42704 1394 aaKnown RBP18.28■□□□□ 0.52
VEGFA-223ENST00000523125 LRP6O75581 1613 aa18.27■□□□□ 0.52
VEGFA-223ENST00000523125 C14orf93Q9H972 538 aaKnown RBP18.26■□□□□ 0.51
VEGFA-223ENST00000523125 STK26Q9P289 416 aa18.26■□□□□ 0.51
VEGFA-223ENST00000523125 ABCC11Q96J66 1382 aa18.26■□□□□ 0.51
VEGFA-223ENST00000523125 CDC42BPGQ6DT37 1551 aa18.25■□□□□ 0.51
VEGFA-223ENST00000523125 SPATA31A6Q5VVP1 1343 aa18.25■□□□□ 0.51
VEGFA-223ENST00000523125 DDX17Q92841 729 aaKnown RBP18.25■□□□□ 0.51
VEGFA-223ENST00000523125 YTHDC2Q9H6S0 1430 aaKnown RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms