RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SULF1Q8IWU6 871 aa13.81□□□□□ -0.2
NUP54-215ENST00000514313 TATDN2Q93075 761 aa13.81□□□□□ -0.2
NUP54-215ENST00000514313 MAMSTRQ6ZN01 415 aa13.8□□□□□ -0.2
NUP54-215ENST00000514313 TMEM134Q9H6X4 195 aa13.8□□□□□ -0.2
NUP54-215ENST00000514313 SNRKQ9NRH2 765 aa13.8□□□□□ -0.2
NUP54-215ENST00000514313 RAD21O60216 631 aa13.79□□□□□ -0.2
NUP54-215ENST00000514313 PPP2R2DQ66LE6 453 aa13.79□□□□□ -0.2
NUP54-215ENST00000514313 FNBP4Q8N3X1 1017 aaPredicted RBP13.79□□□□□ -0.2
NUP54-215ENST00000514313 BANK1Q8NDB2 785 aa13.79□□□□□ -0.2
NUP54-215ENST00000514313 COG6Q9Y2V7 657 aa13.78□□□□□ -0.2
NUP54-215ENST00000514313 SPTLC1O15269 473 aa13.77□□□□□ -0.21
NUP54-215ENST00000514313 HOXB1P14653 301 aaPredicted RBP13.77□□□□□ -0.21
NUP54-215ENST00000514313 PROX2Q3B8N5 592 aa13.77□□□□□ -0.21
NUP54-215ENST00000514313 RSBN1LQ6PCB5 846 aaPredicted RBP13.77□□□□□ -0.21
NUP54-215ENST00000514313 NUTM1Q86Y26 1132 aa13.77□□□□□ -0.21
NUP54-215ENST00000514313 SMAPO00193 183 aa13.76□□□□□ -0.21
NUP54-215ENST00000514313 TUSC1Q2TAM9 212 aa13.76□□□□□ -0.21
NUP54-215ENST00000514313 PACS2Q86VP3 889 aa13.76□□□□□ -0.21
NUP54-215ENST00000514313 MOXD2PA6NHM9 499 aa13.75□□□□□ -0.21
NUP54-215ENST00000514313 TMEM259Q4ZIN3 620 aa13.75□□□□□ -0.21
NUP54-215ENST00000514313 ZNF777Q9ULD5 760 aaPredicted RBP13.75□□□□□ -0.21
NUP54-215ENST00000514313 CSPP1Q1MSJ5 1256 aa13.74□□□□□ -0.21
NUP54-215ENST00000514313 KCNK17Q96T54 332 aa13.73□□□□□ -0.21
NUP54-215ENST00000514313 NDUFV2P19404 249 aa13.72□□□□□ -0.21
NUP54-215ENST00000514313 QPCTQ16769 361 aa13.72□□□□□ -0.21
NUP54-215ENST00000514313 RDH13Q8NBN7 331 aa13.71□□□□□ -0.21
NUP54-215ENST00000514313 SNPHO15079 494 aa13.7□□□□□ -0.22
NUP54-215ENST00000514313 MTMR14Q8NCE2 650 aa13.7□□□□□ -0.22
NUP54-215ENST00000514313 PCDHB15Q9Y5E8 787 aa13.69□□□□□ -0.22
NUP54-215ENST00000514313 GJA5P36382 358 aa13.68□□□□□ -0.22
NUP54-215ENST00000514313 LILRB3O75022 631 aa13.67□□□□□ -0.22
NUP54-215ENST00000514313 ZBED2Q9BTP6 218 aa13.66□□□□□ -0.22
NUP54-215ENST00000514313 KDM4AO75164 1064 aa13.65□□□□□ -0.22
NUP54-215ENST00000514313 RTL5Q5HYW3 569 aaPredicted RBP13.65□□□□□ -0.22
NUP54-215ENST00000514313 CABLES1Q8TDN4 633 aa13.65□□□□□ -0.22
NUP54-215ENST00000514313 KIAA1468Q9P260 1216 aa13.65□□□□□ -0.22
NUP54-215ENST00000514313 KCNH8Q96L42 1107 aa13.64□□□□□ -0.23
NUP54-215ENST00000514313 GDPD2Q9HCC8 539 aa13.64□□□□□ -0.23
NUP54-215ENST00000514313 AP1G2O75843 785 aa13.63□□□□□ -0.23
NUP54-215ENST00000514313 PODXL2Q9NZ53 605 aa13.63□□□□□ -0.23
NUP54-215ENST00000514313 HOXA2O43364 376 aa13.62□□□□□ -0.23
NUP54-215ENST00000514313 GCGRP47871 477 aa13.62□□□□□ -0.23
NUP54-215ENST00000514313 PSEN2P49810 448 aa13.62□□□□□ -0.23
NUP54-215ENST00000514313 CCDC97Q96F63 343 aaPredicted RBP13.62□□□□□ -0.23
NUP54-215ENST00000514313 PLSCR2Q9NRY7 297 aa13.62□□□□□ -0.23
NUP54-215ENST00000514313 ZNF330Q9Y3S2 320 aaPredicted RBP13.62□□□□□ -0.23
NUP54-215ENST00000514313 SOCS7O14512 581 aa13.61□□□□□ -0.23
NUP54-215ENST00000514313 TRIM26Q12899 539 aaPredicted RBP13.61□□□□□ -0.23
NUP54-215ENST00000514313 SWT1Q5T5J6 900 aaKnown RBP13.61□□□□□ -0.23
NUP54-215ENST00000514313 NUTM2BA6NNL0 878 aaPredicted RBP13.6□□□□□ -0.23
NUP54-215ENST00000514313 NUTM2EB1AL46 878 aaPredicted RBP13.6□□□□□ -0.23
NUP54-215ENST00000514313 SLC10A3P09131 477 aa13.6□□□□□ -0.23
NUP54-215ENST00000514313 USP17L8P0C7I0 530 aa13.6□□□□□ -0.23
NUP54-215ENST00000514313 USP46P62068 366 aa13.6□□□□□ -0.23
NUP54-215ENST00000514313 NUTM2DQ5VT03 806 aaPredicted RBP13.6□□□□□ -0.23
NUP54-215ENST00000514313 PRPF38BQ5VTL8 546 aaKnown RBP13.6□□□□□ -0.23
NUP54-215ENST00000514313 NUTM2AQ8IVF1 878 aaPredicted RBP13.6□□□□□ -0.23
NUP54-215ENST00000514313 SERPINA10Q9UK55 444 aa13.6□□□□□ -0.23
NUP54-215ENST00000514313 SEPT9Q9UHD8 586 aaPredicted RBP13.59□□□□□ -0.23
NUP54-215ENST00000514313 FDX1P10109 184 aa13.58□□□□□ -0.24
NUP54-215ENST00000514313 HRCP23327 699 aa13.58□□□□□ -0.24
NUP54-215ENST00000514313 GUCA2AQ02747 115 aa13.58□□□□□ -0.24
NUP54-215ENST00000514313 ZBTB3Q9H5J0 574 aa13.58□□□□□ -0.24
NUP54-215ENST00000514313 TBC1D2BQ9UPU7 963 aa13.58□□□□□ -0.24
NUP54-215ENST00000514313 ABL2P42684 1182 aa13.57□□□□□ -0.24
NUP54-215ENST00000514313 HLA-CQ95604 372 aa13.57□□□□□ -0.24
NUP54-215ENST00000514313 RSPH4AQ5TD94 716 aa13.56□□□□□ -0.24
NUP54-215ENST00000514313 RABGEF1Q9UJ41 708 aa13.56□□□□□ -0.24
NUP54-215ENST00000514313 PCDHGC3Q9UN70 934 aa13.56□□□□□ -0.24
NUP54-215ENST00000514313 POTEEQ6S8J3 1075 aa13.55□□□□□ -0.24
NUP54-215ENST00000514313 LHX8Q68G74 356 aa13.53□□□□□ -0.24
NUP54-215ENST00000514313 PRM3Q9NNZ6 103 aa13.53□□□□□ -0.24
NUP54-215ENST00000514313 ARHGAP33O14559 1287 aa13.52□□□□□ -0.25
NUP54-215ENST00000514313 DMRTA1Q5VZB9 504 aa13.52□□□□□ -0.25
NUP54-215ENST00000514313 WWC1Q8IX03 1113 aa13.52□□□□□ -0.25
NUP54-215ENST00000514313 PDIA4P13667 645 aaKnown RBP13.51□□□□□ -0.25
NUP54-215ENST00000514313 VARS2Q5ST30 1063 aaKnown RBP13.51□□□□□ -0.25
NUP54-215ENST00000514313 GJD4Q96KN9 370 aaPredicted RBP13.51□□□□□ -0.25
NUP54-215ENST00000514313 SLC4A5Q9BY07 1137 aa13.51□□□□□ -0.25
NUP54-215ENST00000514313 AXIN2Q9Y2T1 843 aa13.51□□□□□ -0.25
NUP54-215ENST00000514313 POM121CA8CG34 1229 aa13.5□□□□□ -0.25
NUP54-215ENST00000514313 OTUD5Q96G74 571 aa13.5□□□□□ -0.25
NUP54-215ENST00000514313 ERBB3P21860 1342 aa13.49□□□□□ -0.25
NUP54-215ENST00000514313 FAM98CQ17RN3 349 aaKnown RBP13.49□□□□□ -0.25
NUP54-215ENST00000514313 MTMR2Q13614 643 aa13.48□□□□□ -0.25
NUP54-215ENST00000514313 HMX1Q9NP08 348 aaPredicted RBP13.48□□□□□ -0.25
NUP54-215ENST00000514313 NDUFB9Q9Y6M9 179 aa13.48□□□□□ -0.25
NUP54-215ENST00000514313 CTDSPL2Q05D32 466 aa13.47□□□□□ -0.25
NUP54-215ENST00000514313 FUT2Q10981 343 aa13.47□□□□□ -0.25
NUP54-215ENST00000514313 CFHP08603 1231 aa13.46□□□□□ -0.25
NUP54-215ENST00000514313 SAMD7Q7Z3H4 446 aa13.46□□□□□ -0.25
NUP54-215ENST00000514313 GLMNQ92990 594 aa13.46□□□□□ -0.25
NUP54-215ENST00000514313 CALR3Q96L12 384 aaKnown RBP13.46□□□□□ -0.25
NUP54-215ENST00000514313 HDGFP51858 240 aaKnown RBP13.45□□□□□ -0.26
NUP54-215ENST00000514313 SLF2Q8IX21 1173 aa13.45□□□□□ -0.26
NUP54-215ENST00000514313 VPS9D1Q9Y2B5 631 aa13.45□□□□□ -0.26
NUP54-215ENST00000514313 SLC4A3P48751 1232 aa13.44□□□□□ -0.26
NUP54-215ENST00000514313 IRF5Q13568 498 aa13.44□□□□□ -0.26
NUP54-215ENST00000514313 TSC1Q92574 1164 aa13.44□□□□□ -0.26
NUP54-215ENST00000514313 TRIM34Q9BYJ4 488 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms