RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 SOX12O15370 315 aa11.22□□□□□ -0.61
LIMCH1-219ENST00000514096 ADGBQ8N7X0 1667 aa11.21□□□□□ -0.61
LIMCH1-219ENST00000514096 CCDC144AA2RUR9 1427 aa11.21□□□□□ -0.61
LIMCH1-219ENST00000514096 TOM1O60784 492 aa11.21□□□□□ -0.61
LIMCH1-219ENST00000514096 ATF3P18847 181 aa11.21□□□□□ -0.61
LIMCH1-219ENST00000514096 ERVK-7P63135 1459 aa11.21□□□□□ -0.61
LIMCH1-219ENST00000514096 PHF23Q9BUL5 403 aaPredicted RBP11.21□□□□□ -0.62
LIMCH1-219ENST00000514096 AGLP35573 1532 aa11.2□□□□□ -0.62
LIMCH1-219ENST00000514096 MINK1Q8N4C8 1332 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-219ENST00000514096 PZPP20742 1482 aa11.2□□□□□ -0.62
LIMCH1-219ENST00000514096 HSPA1LP34931 641 aa11.2□□□□□ -0.62
LIMCH1-219ENST00000514096 PRDM15P57071 1507 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-219ENST00000514096 TMEM2Q9UHN6 1383 aa11.2□□□□□ -0.62
LIMCH1-219ENST00000514096 NPHP4O75161 1426 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-219ENST00000514096 RIMS2Q9UQ26 1411 aa11.19□□□□□ -0.62
LIMCH1-219ENST00000514096 VGFO15240 615 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-219ENST00000514096 HAP1P54257 671 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-219ENST00000514096 FBXO41Q8TF61 875 aa11.18□□□□□ -0.62
LIMCH1-219ENST00000514096 YTHDC1Q96MU7 727 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-219ENST00000514096 ROCK1Q13464 1354 aa11.18□□□□□ -0.62
LIMCH1-219ENST00000514096 PAK3O75914 559 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-219ENST00000514096 PMFBP1Q8TBY8 1022 aa11.18□□□□□ -0.62
LIMCH1-219ENST00000514096 SHANK2Q9UPX8 1470 aa11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 NUTM2GQ5VZR2 741 aa11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 TMEM94Q12767 1356 aa11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 HFM1A2PYH4 1435 aa11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 ESCO1Q5FWF5 840 aa11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 CEP170BQ9Y4F5 1589 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 DISP3Q9P2K9 1392 aa11.17□□□□□ -0.62
LIMCH1-219ENST00000514096 ADAMTS2O95450 1211 aa11.16□□□□□ -0.62
LIMCH1-219ENST00000514096 A2ML1A8K2U0 1454 aa11.16□□□□□ -0.62
LIMCH1-219ENST00000514096 PLXNC1O60486 1568 aa11.16□□□□□ -0.62
LIMCH1-219ENST00000514096 NOS1P29475 1434 aa11.16□□□□□ -0.62
LIMCH1-219ENST00000514096 FOXO3O43524 673 aa11.15□□□□□ -0.62
LIMCH1-219ENST00000514096 NBPF1Q3BBV0 1214 aa11.15□□□□□ -0.62
LIMCH1-219ENST00000514096 L3MBTL2Q969R5 705 aa11.15□□□□□ -0.62
LIMCH1-219ENST00000514096 A0A0G2JS52 829 aa11.14□□□□□ -0.63
LIMCH1-219ENST00000514096 MEX3CQ5U5Q3 659 aaKnown RBP11.14□□□□□ -0.63
LIMCH1-219ENST00000514096 PRAM1Q96QH2 718 aa11.13□□□□□ -0.63
LIMCH1-219ENST00000514096 ORAI2Q96SN7 254 aa11.13□□□□□ -0.63
LIMCH1-219ENST00000514096 SCAF11Q99590 1463 aaKnown RBP11.13□□□□□ -0.63
LIMCH1-219ENST00000514096 ADGRL2O95490 1459 aa11.12□□□□□ -0.63
LIMCH1-219ENST00000514096 METP08581 1390 aa11.12□□□□□ -0.63
LIMCH1-219ENST00000514096 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.12□□□□□ -0.63
LIMCH1-219ENST00000514096 SLAIN2Q9P270 581 aa11.12□□□□□ -0.63
LIMCH1-219ENST00000514096 TMC1Q8TDI8 760 aa11.11□□□□□ -0.63
LIMCH1-219ENST00000514096 SRPK2P78362 688 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-219ENST00000514096 EFCAB6Q5THR3 1501 aa11.1□□□□□ -0.63
LIMCH1-219ENST00000514096 TONSLQ96HA7 1378 aa11.1□□□□□ -0.63
LIMCH1-219ENST00000514096 CCDC9Q9Y3X0 531 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-219ENST00000514096 NLRP1Q9C000 1473 aa11.1□□□□□ -0.63
LIMCH1-219ENST00000514096 MROH1Q8NDA8 1641 aa11.09□□□□□ -0.63
LIMCH1-219ENST00000514096 MYO3AQ8NEV4 1616 aa11.09□□□□□ -0.63
LIMCH1-219ENST00000514096 CROCC2H7BZ55 1655 aa11.09□□□□□ -0.63
LIMCH1-219ENST00000514096 PREX1Q8TCU6 1659 aa11.09□□□□□ -0.63
LIMCH1-219ENST00000514096 CABLES1Q8TDN4 633 aa11.09□□□□□ -0.63
LIMCH1-219ENST00000514096 PIK3C2BO00750 1634 aa11.09□□□□□ -0.63
LIMCH1-219ENST00000514096 MSH6P52701 1360 aa11.08□□□□□ -0.63
LIMCH1-219ENST00000514096 MAST1Q9Y2H9 1570 aa11.08□□□□□ -0.64
LIMCH1-219ENST00000514096 NGDNQ8NEJ9 315 aaKnown RBP11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 USP35Q9P2H5 1018 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 TBX22Q9Y458 520 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 PKNOX2Q96KN3 472 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 CARD11Q9BXL7 1154 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 REREQ9P2R6 1566 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 PLA2R1Q13018 1463 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 C8orf37Q96NL8 207 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 C19orf44Q9H6X5 657 aa11.06□□□□□ -0.64
LIMCH1-219ENST00000514096 CABP2Q9NPB3 220 aa11.05□□□□□ -0.64
LIMCH1-219ENST00000514096 SYNMO15061 1565 aa11.05□□□□□ -0.64
LIMCH1-219ENST00000514096 PLEKHH1Q9ULM0 1364 aa11.05□□□□□ -0.64
LIMCH1-219ENST00000514096 PSME1Q06323 249 aa11.04□□□□□ -0.64
LIMCH1-219ENST00000514096 CADPS2Q86UW7 1296 aa11.04□□□□□ -0.64
LIMCH1-219ENST00000514096 E9PCH4 1651 aa11.04□□□□□ -0.64
LIMCH1-219ENST00000514096 STRCQ7RTU9 1775 aa11.03□□□□□ -0.64
LIMCH1-219ENST00000514096 A0A0U1RQG5 324 aaPredicted RBP11.03□□□□□ -0.64
LIMCH1-219ENST00000514096 ARHGAP31Q2M1Z3 1444 aa11.03□□□□□ -0.64
LIMCH1-219ENST00000514096 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 SALL2Q9Y467 1007 aaPredicted RBP11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 MYO5BQ9ULV0 1848 aa11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 NBPF8Q3BBV2 869 aa11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 NGLY1Q96IV0 654 aa11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 SPATA31D1Q6ZQQ2 1576 aa11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 ROBO2Q9HCK4 1378 aa11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 RNF17Q9BXT8 1623 aaKnown RBP11.01□□□□□ -0.65
LIMCH1-219ENST00000514096 ANKRD30BQ9BXX2 1392 aa11□□□□□ -0.65
LIMCH1-219ENST00000514096 DHX57Q6P158 1386 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-219ENST00000514096 EIF2AK4Q9P2K8 1649 aaKnown RBP10.99□□□□□ -0.65
LIMCH1-219ENST00000514096 PLEKHG1Q9ULL1 1385 aa10.99□□□□□ -0.65
LIMCH1-219ENST00000514096 PTPRTO14522 1441 aa10.99□□□□□ -0.65
LIMCH1-219ENST00000514096 TNNT2P45379 298 aaPredicted RBP10.99□□□□□ -0.65
LIMCH1-219ENST00000514096 BRINP3Q76B58 766 aa10.99□□□□□ -0.65
LIMCH1-219ENST00000514096 ZC3H6P61129 1189 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-219ENST00000514096 ROCK2O75116 1388 aaKnown RBP10.98□□□□□ -0.65
LIMCH1-219ENST00000514096 ILDR2Q71H61 639 aa10.98□□□□□ -0.65
LIMCH1-219ENST00000514096 PTPRUQ92729 1446 aa10.98□□□□□ -0.65
LIMCH1-219ENST00000514096 TET3O43151 1660 aa10.98□□□□□ -0.65
LIMCH1-219ENST00000514096 CLTCL1P53675 1640 aa10.97□□□□□ -0.65
LIMCH1-219ENST00000514096 GCC2Q8IWJ2 1684 aa10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms