RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 SLC52A1Q9NWF4 448 aa31.86■■■□□ 2.69
SQSTM1-215ENST00000514093 FGD6Q6ZV73 1430 aa31.85■■■□□ 2.69
SQSTM1-215ENST00000514093 APLP2Q06481 763 aa31.85■■■□□ 2.69
SQSTM1-215ENST00000514093 PHLPP1O60346 1717 aa31.83■■■□□ 2.69
SQSTM1-215ENST00000514093 SETD1AO15047 1707 aaKnown RBP31.83■■■□□ 2.69
SQSTM1-215ENST00000514093 JCADQ9P266 1359 aa31.81■■■□□ 2.68
SQSTM1-215ENST00000514093 PPP1R15AO75807 674 aaPredicted RBP31.78■■■□□ 2.68
SQSTM1-215ENST00000514093 PLEKHG1Q9ULL1 1385 aa31.76■■■□□ 2.67
SQSTM1-215ENST00000514093 ZFYVE9O95405 1425 aa31.75■■■□□ 2.67
SQSTM1-215ENST00000514093 RIMS2Q9UQ26 1411 aa31.75■■■□□ 2.67
SQSTM1-215ENST00000514093 CHD2O14647 1828 aaKnown RBP31.74■■■□□ 2.67
SQSTM1-215ENST00000514093 MYO5BQ9ULV0 1848 aa31.73■■■□□ 2.67
SQSTM1-215ENST00000514093 C14orf37Q86TY3 774 aa31.73■■■□□ 2.67
SQSTM1-215ENST00000514093 NUTM2DQ5VT03 806 aaPredicted RBP31.71■■■□□ 2.67
SQSTM1-215ENST00000514093 COL16A1Q07092 1604 aaPredicted RBP31.71■■■□□ 2.67
SQSTM1-215ENST00000514093 CHGAP10645 457 aaKnown RBP31.7■■■□□ 2.67
SQSTM1-215ENST00000514093 HDGFP51858 240 aaKnown RBP31.7■■■□□ 2.67
SQSTM1-215ENST00000514093 LRP6O75581 1613 aa31.69■■■□□ 2.66
SQSTM1-215ENST00000514093 MEX3CQ5U5Q3 659 aaKnown RBP31.69■■■□□ 2.66
SQSTM1-215ENST00000514093 TBX22Q9Y458 520 aa31.69■■■□□ 2.66
SQSTM1-215ENST00000514093 GCC2Q8IWJ2 1684 aa31.68■■■□□ 2.66
SQSTM1-215ENST00000514093 ADGRL2O95490 1459 aa31.67■■■□□ 2.66
SQSTM1-215ENST00000514093 RPRD2Q5VT52 1461 aaKnown RBP31.67■■■□□ 2.66
SQSTM1-215ENST00000514093 FAM50AQ14320 339 aaKnown RBP31.67■■■□□ 2.66
SQSTM1-215ENST00000514093 ANKRD50Q9ULJ7 1429 aa31.66■■■□□ 2.66
SQSTM1-215ENST00000514093 TRIM52Q96A61 297 aa31.66■■■□□ 2.66
SQSTM1-215ENST00000514093 TMEM131LA2VDJ0 1609 aa31.66■■■□□ 2.66
SQSTM1-215ENST00000514093 SPATA31A6Q5VVP1 1343 aa31.64■■■□□ 2.66
SQSTM1-215ENST00000514093 NCOA3Q9Y6Q9 1424 aa31.61■■■□□ 2.65
SQSTM1-215ENST00000514093 ZNF772Q68DY9 489 aaPredicted RBP31.61■■■□□ 2.65
SQSTM1-215ENST00000514093 CADPS2Q86UW7 1296 aa31.61■■■□□ 2.65
SQSTM1-215ENST00000514093 ABCF1Q8NE71 845 aaKnown RBP eCLIP31.61■■■□□ 2.65
SQSTM1-215ENST00000514093 UPF1Q92900 1129 aaKnown RBP eCLIP31.61■■■□□ 2.65
SQSTM1-215ENST00000514093 ADAMTS13Q76LX8 1427 aa31.6■■■□□ 2.65
SQSTM1-215ENST00000514093 ATF3P18847 181 aa31.6■■■□□ 2.65
SQSTM1-215ENST00000514093 C19orf44Q9H6X5 657 aa31.6■■■□□ 2.65
SQSTM1-215ENST00000514093 SIPA1L2Q9P2F8 1722 aaPredicted RBP31.58■■■□□ 2.65
SQSTM1-215ENST00000514093 AHDC1Q5TGY3 1603 aaPredicted RBP31.54■■■□□ 2.64
SQSTM1-215ENST00000514093 NUTM2BA6NNL0 878 aaPredicted RBP31.54■■■□□ 2.64
SQSTM1-215ENST00000514093 NUTM2EB1AL46 878 aaPredicted RBP31.54■■■□□ 2.64
SQSTM1-215ENST00000514093 NUTM2AQ8IVF1 878 aaPredicted RBP31.54■■■□□ 2.64
SQSTM1-215ENST00000514093 AMOTL2Q9Y2J4 779 aa31.52■■■□□ 2.64
SQSTM1-215ENST00000514093 BRINP3Q76B58 766 aa31.51■■■□□ 2.63
SQSTM1-215ENST00000514093 SHPRHQ149N8 1683 aa31.51■■■□□ 2.63
SQSTM1-215ENST00000514093 RXRBP28702 533 aa31.5■■■□□ 2.63
SQSTM1-215ENST00000514093 PIK3R4Q99570 1358 aa31.49■■■□□ 2.63
SQSTM1-215ENST00000514093 PTPRUQ92729 1446 aa31.49■■■□□ 2.63
SQSTM1-215ENST00000514093 E9PCH4 1651 aa31.48■■■□□ 2.63
SQSTM1-215ENST00000514093 DIP2AQ14689 1571 aa31.47■■■□□ 2.63
SQSTM1-215ENST00000514093 UNC13BO14795 1591 aa31.46■■■□□ 2.63
SQSTM1-215ENST00000514093 TRPM2O94759 1503 aa31.43■■■□□ 2.62
SQSTM1-215ENST00000514093 AFF2P51816 1311 aa31.41■■■□□ 2.62
SQSTM1-215ENST00000514093 ASXL1Q8IXJ9 1541 aa31.37■■■□□ 2.61
SQSTM1-215ENST00000514093 DDX17Q92841 729 aaKnown RBP31.36■■■□□ 2.61
SQSTM1-215ENST00000514093 NUP155O75694 1391 aa31.35■■■□□ 2.61
SQSTM1-215ENST00000514093 IQGAP3Q86VI3 1631 aa31.35■■■□□ 2.61
SQSTM1-215ENST00000514093 MST1RQ04912 1400 aa31.33■■■□□ 2.61
SQSTM1-215ENST00000514093 SETD5Q9C0A6 1442 aa31.33■■■□□ 2.61
SQSTM1-215ENST00000514093 CDK12Q9NYV4 1490 aaPredicted RBP31.33■■■□□ 2.61
SQSTM1-215ENST00000514093 DCCP43146 1447 aa31.32■■■□□ 2.61
SQSTM1-215ENST00000514093 C8orf37Q96NL8 207 aa31.32■■■□□ 2.6
SQSTM1-215ENST00000514093 LRRC59Q96AG4 307 aaKnown RBP31.31■■■□□ 2.6
SQSTM1-215ENST00000514093 ZNF326Q5BKZ1 582 aaKnown RBP31.3■■■□□ 2.6
SQSTM1-215ENST00000514093 NRXN3Q9Y4C0 1643 aa31.3■■■□□ 2.6
SQSTM1-215ENST00000514093 METP08581 1390 aa31.3■■■□□ 2.6
SQSTM1-215ENST00000514093 QTRT2Q9H974 415 aaKnown RBP31.29■■■□□ 2.6
SQSTM1-215ENST00000514093 XRN1Q8IZH2 1706 aaKnown RBP31.29■■■□□ 2.6
SQSTM1-215ENST00000514093 ROCK1Q13464 1354 aa31.29■■■□□ 2.6
SQSTM1-215ENST00000514093 ITGAEP38570 1179 aa31.28■■■□□ 2.6
SQSTM1-215ENST00000514093 NHSL1Q5SYE7 1610 aa31.27■■■□□ 2.6
SQSTM1-215ENST00000514093 SETBP1Q9Y6X0 1596 aa31.25■■■□□ 2.59
SQSTM1-215ENST00000514093 RGS12O14924 1447 aa31.24■■■□□ 2.59
SQSTM1-215ENST00000514093 RBM6P78332 1123 aaKnown RBP31.24■■■□□ 2.59
SQSTM1-215ENST00000514093 PNPLA6Q8IY17 1366 aa31.23■■■□□ 2.59
SQSTM1-215ENST00000514093 ADAMTS2O95450 1211 aa31.21■■■□□ 2.59
SQSTM1-215ENST00000514093 ADGRL3Q9HAR2 1447 aa31.19■■■□□ 2.58
SQSTM1-215ENST00000514093 NGLY1Q96IV0 654 aa31.19■■■□□ 2.58
SQSTM1-215ENST00000514093 SPHKAPQ2M3C7 1700 aa31.15■■■□□ 2.58
SQSTM1-215ENST00000514093 NALCNQ8IZF0 1738 aa31.14■■■□□ 2.58
SQSTM1-215ENST00000514093 C1orf167Q5SNV9 1468 aa31.12■■■□□ 2.57
SQSTM1-215ENST00000514093 ORAI2Q96SN7 254 aa31.1■■■□□ 2.57
SQSTM1-215ENST00000514093 NEXMIFQ5QGS0 1516 aa31.08■■■□□ 2.57
SQSTM1-215ENST00000514093 USP21Q9UK80 565 aa31.07■■■□□ 2.56
SQSTM1-215ENST00000514093 PPARGC1BQ86YN6 1023 aaKnown RBP31.06■■■□□ 2.56
SQSTM1-215ENST00000514093 CLTCL1P53675 1640 aa31.05■■■□□ 2.56
SQSTM1-215ENST00000514093 SOS2Q07890 1332 aaPredicted RBP31.04■■■□□ 2.56
SQSTM1-215ENST00000514093 SRCAPQ6ZRS2 3230 aa31.04■■■□□ 2.56
SQSTM1-215ENST00000514093 ATAD2Q6PL18 1390 aa31.02■■■□□ 2.56
SQSTM1-215ENST00000514093 ROBO2Q9HCK4 1378 aa31.02■■■□□ 2.56
SQSTM1-215ENST00000514093 TRPC5Q9UL62 973 aaPredicted RBP31.01■■■□□ 2.55
SQSTM1-215ENST00000514093 FNBP4Q8N3X1 1017 aaPredicted RBP30.98■■■□□ 2.55
SQSTM1-215ENST00000514093 LAMC1P11047 1609 aa30.98■■■□□ 2.55
SQSTM1-215ENST00000514093 PTCH1Q13635 1447 aa30.97■■■□□ 2.55
SQSTM1-215ENST00000514093 KIF1BO60333 1816 aa30.94■■■□□ 2.54
SQSTM1-215ENST00000514093 VGFO15240 615 aaPredicted RBP30.93■■■□□ 2.54
SQSTM1-215ENST00000514093 ATRNO75882 1429 aa30.92■■■□□ 2.54
SQSTM1-215ENST00000514093 ZRANB1Q9UGI0 708 aa30.9■■■□□ 2.54
SQSTM1-215ENST00000514093 ESCO1Q5FWF5 840 aa30.89■■■□□ 2.54
SQSTM1-215ENST00000514093 XPCQ01831 940 aaPredicted RBP30.88■■■□□ 2.53
SQSTM1-215ENST00000514093 COL22A1Q8NFW1 1626 aaPredicted RBP30.86■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms