RNA–Protein interactions for RNA: ENST00000513139.1

SPCS3-204, Transcript of signal peptidase complex subunit 3, humanhuman

TSL 2

Gene SPCS3, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPCS3-204ENST00000513139 SLC52A1Q9NWF4 448 aa21.93■■□□□ 1.1
SPCS3-204ENST00000513139 JCADQ9P266 1359 aa21.93■■□□□ 1.1
SPCS3-204ENST00000513139 SLAIN2Q9P270 581 aa21.93■■□□□ 1.1
SPCS3-204ENST00000513139 MSH5O43196 834 aa21.92■■□□□ 1.1
SPCS3-204ENST00000513139 RBM33Q96EV2 1170 aaKnown RBP21.92■■□□□ 1.1
SPCS3-204ENST00000513139 MYO5BQ9ULV0 1848 aa21.92■■□□□ 1.1
SPCS3-204ENST00000513139 ANKRD30AQ9BXX3 1397 aa21.9■■□□□ 1.1
SPCS3-204ENST00000513139 COL16A1Q07092 1604 aaPredicted RBP21.89■■□□□ 1.09
SPCS3-204ENST00000513139 RPRD2Q5VT52 1461 aaKnown RBP21.88■■□□□ 1.09
SPCS3-204ENST00000513139 NCOA3Q9Y6Q9 1424 aa21.87■■□□□ 1.09
SPCS3-204ENST00000513139 BCANQ96GW7 911 aa21.86■■□□□ 1.09
SPCS3-204ENST00000513139 ZFYVE9O95405 1425 aa21.86■■□□□ 1.09
SPCS3-204ENST00000513139 PLEKHG1Q9ULL1 1385 aa21.86■■□□□ 1.09
SPCS3-204ENST00000513139 FGD6Q6ZV73 1430 aa21.85■■□□□ 1.09
SPCS3-204ENST00000513139 GCC2Q8IWJ2 1684 aa21.85■■□□□ 1.09
SPCS3-204ENST00000513139 HDGFP51858 240 aaKnown RBP21.84■■□□□ 1.09
SPCS3-204ENST00000513139 SPATA31A6Q5VVP1 1343 aa21.83■■□□□ 1.09
SPCS3-204ENST00000513139 SHPRHQ149N8 1683 aa21.82■■□□□ 1.08
SPCS3-204ENST00000513139 TMEM131LA2VDJ0 1609 aa21.82■■□□□ 1.08
SPCS3-204ENST00000513139 CHIC2Q9UKJ5 165 aa21.81■■□□□ 1.08
SPCS3-204ENST00000513139 AHDC1Q5TGY3 1603 aaPredicted RBP21.8■■□□□ 1.08
SPCS3-204ENST00000513139 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.8■■□□□ 1.08
SPCS3-204ENST00000513139 ADGRL2O95490 1459 aa21.8■■□□□ 1.08
SPCS3-204ENST00000513139 ZNF772Q68DY9 489 aaPredicted RBP21.8■■□□□ 1.08
SPCS3-204ENST00000513139 TBX22Q9Y458 520 aa21.8■■□□□ 1.08
SPCS3-204ENST00000513139 RIMS2Q9UQ26 1411 aa21.8■■□□□ 1.08
SPCS3-204ENST00000513139 LRP6O75581 1613 aa21.79■■□□□ 1.08
SPCS3-204ENST00000513139 PPP1R15AO75807 674 aaPredicted RBP21.78■■□□□ 1.08
SPCS3-204ENST00000513139 DIP2AQ14689 1571 aa21.78■■□□□ 1.08
SPCS3-204ENST00000513139 LOC105371045A0A1W2PR82 267 aa21.77■■□□□ 1.08
SPCS3-204ENST00000513139 APLP2Q06481 763 aa21.77■■□□□ 1.08
SPCS3-204ENST00000513139 CADPS2Q86UW7 1296 aa21.76■■□□□ 1.07
SPCS3-204ENST00000513139 UPF1Q92900 1129 aaKnown RBP eCLIP21.76■■□□□ 1.07
SPCS3-204ENST00000513139 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.75■■□□□ 1.07
SPCS3-204ENST00000513139 C19orf44Q9H6X5 657 aa21.75■■□□□ 1.07
SPCS3-204ENST00000513139 PIK3R4Q99570 1358 aa21.74■■□□□ 1.07
SPCS3-204ENST00000513139 MEX3CQ5U5Q3 659 aaKnown RBP21.74■■□□□ 1.07
SPCS3-204ENST00000513139 C14orf37Q86TY3 774 aa21.73■■□□□ 1.07
SPCS3-204ENST00000513139 ANKRD50Q9ULJ7 1429 aa21.72■■□□□ 1.07
SPCS3-204ENST00000513139 ATF3P18847 181 aa21.72■■□□□ 1.07
SPCS3-204ENST00000513139 ADAMTS13Q76LX8 1427 aa21.72■■□□□ 1.07
SPCS3-204ENST00000513139 CDK12Q9NYV4 1490 aaPredicted RBP21.71■■□□□ 1.07
SPCS3-204ENST00000513139 TRIM52Q96A61 297 aa21.69■■□□□ 1.06
SPCS3-204ENST00000513139 UNC13BO14795 1591 aa21.69■■□□□ 1.06
SPCS3-204ENST00000513139 RXRBP28702 533 aa21.68■■□□□ 1.06
SPCS3-204ENST00000513139 E9PCH4 1651 aa21.68■■□□□ 1.06
SPCS3-204ENST00000513139 TRPM2O94759 1503 aa21.67■■□□□ 1.06
SPCS3-204ENST00000513139 DCCP43146 1447 aa21.66■■□□□ 1.06
SPCS3-204ENST00000513139 BRINP3Q76B58 766 aa21.64■■□□□ 1.05
SPCS3-204ENST00000513139 NHSL1Q5SYE7 1610 aa21.63■■□□□ 1.05
SPCS3-204ENST00000513139 CHGAP10645 457 aaKnown RBP21.63■■□□□ 1.05
SPCS3-204ENST00000513139 SETD5Q9C0A6 1442 aa21.62■■□□□ 1.05
SPCS3-204ENST00000513139 AMOTL2Q9Y2J4 779 aa21.61■■□□□ 1.05
SPCS3-204ENST00000513139 IQGAP3Q86VI3 1631 aa21.61■■□□□ 1.05
SPCS3-204ENST00000513139 XRN1Q8IZH2 1706 aaKnown RBP21.6■■□□□ 1.05
SPCS3-204ENST00000513139 ASXL1Q8IXJ9 1541 aa21.6■■□□□ 1.05
SPCS3-204ENST00000513139 PTPRUQ92729 1446 aa21.6■■□□□ 1.05
SPCS3-204ENST00000513139 SRCAPQ6ZRS2 3230 aa21.59■■□□□ 1.05
SPCS3-204ENST00000513139 FAM50AQ14320 339 aaKnown RBP21.59■■□□□ 1.05
SPCS3-204ENST00000513139 NUTM2DQ5VT03 806 aaPredicted RBP21.59■■□□□ 1.05
SPCS3-204ENST00000513139 AFF2P51816 1311 aa21.58■■□□□ 1.05
SPCS3-204ENST00000513139 NUTM2BA6NNL0 878 aaPredicted RBP21.58■■□□□ 1.05
SPCS3-204ENST00000513139 NUTM2EB1AL46 878 aaPredicted RBP21.58■■□□□ 1.05
SPCS3-204ENST00000513139 NUTM2AQ8IVF1 878 aaPredicted RBP21.58■■□□□ 1.05
SPCS3-204ENST00000513139 NRXN3Q9Y4C0 1643 aa21.56■■□□□ 1.04
SPCS3-204ENST00000513139 LRRC59Q96AG4 307 aaKnown RBP21.56■■□□□ 1.04
SPCS3-204ENST00000513139 SETBP1Q9Y6X0 1596 aa21.56■■□□□ 1.04
SPCS3-204ENST00000513139 MST1RQ04912 1400 aa21.55■■□□□ 1.04
SPCS3-204ENST00000513139 PPP4R3CPQ6ZMV5 832 aa21.55■■□□□ 1.04
SPCS3-204ENST00000513139 RBM6P78332 1123 aaKnown RBP21.52■■□□□ 1.04
SPCS3-204ENST00000513139 ROCK1Q13464 1354 aa21.51■■□□□ 1.03
SPCS3-204ENST00000513139 RGS12O14924 1447 aa21.5■■□□□ 1.03
SPCS3-204ENST00000513139 QTRT2Q9H974 415 aaKnown RBP21.5■■□□□ 1.03
SPCS3-204ENST00000513139 SPHKAPQ2M3C7 1700 aa21.49■■□□□ 1.03
SPCS3-204ENST00000513139 PNPLA6Q8IY17 1366 aa21.48■■□□□ 1.03
SPCS3-204ENST00000513139 ADGRL3Q9HAR2 1447 aa21.48■■□□□ 1.03
SPCS3-204ENST00000513139 NALCNQ8IZF0 1738 aa21.48■■□□□ 1.03
SPCS3-204ENST00000513139 LAMC1P11047 1609 aa21.47■■□□□ 1.03
SPCS3-204ENST00000513139 C8orf37Q96NL8 207 aa21.47■■□□□ 1.03
SPCS3-204ENST00000513139 NUP155O75694 1391 aa21.47■■□□□ 1.03
SPCS3-204ENST00000513139 METP08581 1390 aa21.45■■□□□ 1.02
SPCS3-204ENST00000513139 NGLY1Q96IV0 654 aa21.44■■□□□ 1.02
SPCS3-204ENST00000513139 EP400Q96L91 3159 aa21.42■■□□□ 1.02
SPCS3-204ENST00000513139 DDX17Q92841 729 aaKnown RBP21.41■■□□□ 1.02
SPCS3-204ENST00000513139 ATAD2Q6PL18 1390 aa21.4■■□□□ 1.02
SPCS3-204ENST00000513139 ZNF326Q5BKZ1 582 aaKnown RBP21.39■■□□□ 1.01
SPCS3-204ENST00000513139 C1orf167Q5SNV9 1468 aa21.39■■□□□ 1.01
SPCS3-204ENST00000513139 KIF1BO60333 1816 aa21.39■■□□□ 1.01
SPCS3-204ENST00000513139 NEXMIFQ5QGS0 1516 aa21.38■■□□□ 1.01
SPCS3-204ENST00000513139 SOS2Q07890 1332 aaPredicted RBP21.36■■□□□ 1.01
SPCS3-204ENST00000513139 ADAMTS2O95450 1211 aa21.36■■□□□ 1.01
SPCS3-204ENST00000513139 PTCH1Q13635 1447 aa21.36■■□□□ 1.01
SPCS3-204ENST00000513139 COL22A1Q8NFW1 1626 aaPredicted RBP21.35■■□□□ 1.01
SPCS3-204ENST00000513139 CLTCL1P53675 1640 aa21.34■■□□□ 1.01
SPCS3-204ENST00000513139 FNBP4Q8N3X1 1017 aaPredicted RBP21.34■■□□□ 1.01
SPCS3-204ENST00000513139 USP21Q9UK80 565 aa21.34■■□□□ 1.01
SPCS3-204ENST00000513139 TRPC5Q9UL62 973 aaPredicted RBP21.34■■□□□ 1.01
SPCS3-204ENST00000513139 KCNA4P22459 653 aa21.33■■□□□ 1.01
SPCS3-204ENST00000513139 MARF1Q9Y4F3 1742 aaKnown RBP21.32■■□□□ 1
SPCS3-204ENST00000513139 PRAG1Q86YV5 1406 aa21.31■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 107.9 ms