RNA–Protein interactions for RNA: ENST00000509748.1

LIN54-208, Transcript of lin-54 DREAM MuvB core complex component, human

TSL 5

Gene LIN54, Length 729 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIN54-208	ENST00000509748	PIP4K2B	P78356	416 aa		32.12	■■■□□ 2.73
LIN54-208	ENST00000509748	XIRP1	Q702N8	1843 aa	Known RBP	32.12	■■■□□ 2.73
LIN54-208	ENST00000509748	PLEKHG1	Q9ULL1	1385 aa		32.11	■■■□□ 2.73
LIN54-208	ENST00000509748	KCNA6	P17658	529 aa		32.11	■■■□□ 2.73
LIN54-208	ENST00000509748	HDGF	P51858	240 aa	Known RBP	32.08	■■■□□ 2.73
LIN54-208	ENST00000509748	SPHKAP	Q2M3C7	1700 aa		32.08	■■■□□ 2.73
LIN54-208	ENST00000509748	SCAF1	Q9H7N4	1312 aa	Known RBP	32.06	■■■□□ 2.72
LIN54-208	ENST00000509748	SENP3	Q9H4L4	574 aa	Predicted RBP	32.06	■■■□□ 2.72
LIN54-208	ENST00000509748	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	32.05	■■■□□ 2.72
LIN54-208	ENST00000509748	PPP1R15A	O75807	674 aa	Predicted RBP	32.04	■■■□□ 2.72
LIN54-208	ENST00000509748	HSPA1L	P34931	641 aa		32.04	■■■□□ 2.72
LIN54-208	ENST00000509748	BCAN	Q96GW7	911 aa		32.04	■■■□□ 2.72
LIN54-208	ENST00000509748	NUTM2D	Q5VT03	806 aa	Predicted RBP	32.03	■■■□□ 2.72
LIN54-208	ENST00000509748	NWD1	Q149M9	1564 aa		32.02	■■■□□ 2.72
LIN54-208	ENST00000509748	TMEM94	Q12767	1356 aa		32	■■■□□ 2.71
LIN54-208	ENST00000509748	TBX22	Q9Y458	520 aa		32	■■■□□ 2.71
LIN54-208	ENST00000509748	ADAMTS13	Q76LX8	1427 aa		31.99	■■■□□ 2.71
LIN54-208	ENST00000509748	CHD2	O14647	1828 aa	Known RBP	31.98	■■■□□ 2.71
LIN54-208	ENST00000509748	PROSER2	Q86WR7	435 aa	Predicted RBP	31.97	■■■□□ 2.71
LIN54-208	ENST00000509748	TRIM52	Q96A61	297 aa		31.97	■■■□□ 2.71
LIN54-208	ENST00000509748	DISP3	Q9P2K9	1392 aa		31.96	■■■□□ 2.71
LIN54-208	ENST00000509748	NKTR	P30414	1462 aa	Known RBP	31.96	■■■□□ 2.71
LIN54-208	ENST00000509748	TRPM2	O94759	1503 aa		31.95	■■■□□ 2.71
LIN54-208	ENST00000509748	RBM33	Q96EV2	1170 aa	Known RBP	31.95	■■■□□ 2.71
LIN54-208	ENST00000509748	CLTCL1	P53675	1640 aa		31.95	■■■□□ 2.71
LIN54-208	ENST00000509748	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.89	■■■□□ 2.7
LIN54-208	ENST00000509748	DIP2A	Q14689	1571 aa		31.89	■■■□□ 2.7
LIN54-208	ENST00000509748	PIK3R4	Q99570	1358 aa		31.85	■■■□□ 2.69
LIN54-208	ENST00000509748	ZNF326	Q5BKZ1	582 aa	Known RBP	31.85	■■■□□ 2.69
LIN54-208	ENST00000509748	NRXN3	Q9Y4C0	1643 aa		31.85	■■■□□ 2.69
LIN54-208	ENST00000509748	KIF1B	O60333	1816 aa		31.83	■■■□□ 2.69
LIN54-208	ENST00000509748	NEXMIF	Q5QGS0	1516 aa		31.83	■■■□□ 2.69
LIN54-208	ENST00000509748	SETBP1	Q9Y6X0	1596 aa		31.82	■■■□□ 2.68
LIN54-208	ENST00000509748	ILDR2	Q71H61	639 aa		31.82	■■■□□ 2.68
LIN54-208	ENST00000509748	FAM135B	Q49AJ0	1406 aa		31.82	■■■□□ 2.68
LIN54-208	ENST00000509748	PTPRU	Q92729	1446 aa		31.82	■■■□□ 2.68
LIN54-208	ENST00000509748	FOXD1	Q16676	465 aa		31.78	■■■□□ 2.68
LIN54-208	ENST00000509748	MSH6	P52701	1360 aa		31.77	■■■□□ 2.68
LIN54-208	ENST00000509748	NCOA3	Q9Y6Q9	1424 aa		31.76	■■■□□ 2.68
LIN54-208	ENST00000509748	AMOTL2	Q9Y2J4	779 aa		31.76	■■■□□ 2.67
LIN54-208	ENST00000509748	MPHOSPH9	Q99550	1183 aa		31.74	■■■□□ 2.67
LIN54-208	ENST00000509748	MET	P08581	1390 aa		31.72	■■■□□ 2.67
LIN54-208	ENST00000509748	MED1	Q15648	1581 aa	Predicted RBP	31.72	■■■□□ 2.67
LIN54-208	ENST00000509748	SETD5	Q9C0A6	1442 aa		31.71	■■■□□ 2.67
LIN54-208	ENST00000509748	XRN1	Q8IZH2	1706 aa	Known RBP	31.7	■■■□□ 2.67
LIN54-208	ENST00000509748	SLAIN2	Q9P270	581 aa		31.7	■■■□□ 2.67
LIN54-208	ENST00000509748	ROBO1	Q9Y6N7	1651 aa		31.7	■■■□□ 2.66
LIN54-208	ENST00000509748	RPGRIP1L	Q68CZ1	1315 aa		31.68	■■■□□ 2.66
LIN54-208	ENST00000509748	VGF	O15240	615 aa	Predicted RBP	31.66	■■■□□ 2.66
LIN54-208	ENST00000509748	C19orf44	Q9H6X5	657 aa		31.65	■■■□□ 2.66
LIN54-208	ENST00000509748	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	31.65	■■■□□ 2.66
LIN54-208	ENST00000509748	PPL	O60437	1756 aa		31.63	■■■□□ 2.65
LIN54-208	ENST00000509748	C14orf37	Q86TY3	774 aa		31.62	■■■□□ 2.65
LIN54-208	ENST00000509748	ACIN1	Q9UKV3	1341 aa	Known RBP	31.62	■■■□□ 2.65
LIN54-208	ENST00000509748	SETD1A	O15047	1707 aa	Known RBP	31.61	■■■□□ 2.65
LIN54-208	ENST00000509748	CCDC144A	A2RUR9	1427 aa		31.6	■■■□□ 2.65
LIN54-208	ENST00000509748	SPATA31E1	Q6ZUB1	1445 aa		31.6	■■■□□ 2.65
LIN54-208	ENST00000509748	RAB3GAP2	Q9H2M9	1393 aa		31.58	■■■□□ 2.65
LIN54-208	ENST00000509748	CADPS2	Q86UW7	1296 aa		31.58	■■■□□ 2.65
LIN54-208	ENST00000509748	ATF3	P18847	181 aa		31.55	■■■□□ 2.64
LIN54-208	ENST00000509748	RGL3	Q3MIN7	710 aa		31.52	■■■□□ 2.64
LIN54-208	ENST00000509748	ADGRF5	Q8IZF2	1346 aa		31.51	■■■□□ 2.64
LIN54-208	ENST00000509748	DCC	P43146	1447 aa		31.51	■■■□□ 2.64
LIN54-208	ENST00000509748	PHLPP1	O60346	1717 aa		31.49	■■■□□ 2.63
LIN54-208	ENST00000509748	SOCS7	O14512	581 aa		31.49	■■■□□ 2.63
LIN54-208	ENST00000509748	IFT172	Q9UG01	1749 aa		31.49	■■■□□ 2.63
LIN54-208	ENST00000509748	PRAG1	Q86YV5	1406 aa		31.48	■■■□□ 2.63
LIN54-208	ENST00000509748	ADGRL3	Q9HAR2	1447 aa		31.47	■■■□□ 2.63
LIN54-208	ENST00000509748	ROBO2	Q9HCK4	1378 aa		31.46	■■■□□ 2.63
LIN54-208	ENST00000509748	PTCH1	Q13635	1447 aa		31.46	■■■□□ 2.63
LIN54-208	ENST00000509748	ANKRD30B	Q9BXX2	1392 aa		31.45	■■■□□ 2.63
LIN54-208	ENST00000509748	COL16A1	Q07092	1604 aa	Predicted RBP	31.45	■■■□□ 2.62
LIN54-208	ENST00000509748	MST1R	Q04912	1400 aa		31.44	■■■□□ 2.62
LIN54-208	ENST00000509748	BRINP3	Q76B58	766 aa		31.44	■■■□□ 2.62
LIN54-208	ENST00000509748	NALCN	Q8IZF0	1738 aa		31.44	■■■□□ 2.62
LIN54-208	ENST00000509748	PHF23	Q9BUL5	403 aa	Predicted RBP	31.43	■■■□□ 2.62
LIN54-208	ENST00000509748	AHDC1	Q5TGY3	1603 aa	Predicted RBP	31.42	■■■□□ 2.62
LIN54-208	ENST00000509748	HRC	P23327	699 aa		31.41	■■■□□ 2.62
LIN54-208	ENST00000509748	RGS17	Q9UGC6	210 aa	Predicted RBP	31.4	■■■□□ 2.62
LIN54-208	ENST00000509748	JCAD	Q9P266	1359 aa		31.39	■■■□□ 2.62
LIN54-208	ENST00000509748	PIK3C2G	O75747	1445 aa		31.37	■■■□□ 2.61
LIN54-208	ENST00000509748	ASXL1	Q8IXJ9	1541 aa		31.35	■■■□□ 2.61
LIN54-208	ENST00000509748	NRXN1	Q9ULB1	1477 aa		31.32	■■■□□ 2.6
LIN54-208	ENST00000509748	TECPR2	O15040	1411 aa		31.31	■■■□□ 2.6
LIN54-208	ENST00000509748	LRPPRC	P42704	1394 aa	Known RBP	31.3	■■■□□ 2.6
LIN54-208	ENST00000509748	TMEM132E	Q6IEE7	984 aa		31.3	■■■□□ 2.6
LIN54-208	ENST00000509748	C1orf167	Q5SNV9	1468 aa		31.29	■■■□□ 2.6
LIN54-208	ENST00000509748	NHSL1	Q5SYE7	1610 aa		31.28	■■■□□ 2.6
LIN54-208	ENST00000509748	C14orf93	Q9H972	538 aa	Known RBP	31.28	■■■□□ 2.6
LIN54-208	ENST00000509748	ABCC11	Q96J66	1382 aa		31.28	■■■□□ 2.6
LIN54-208	ENST00000509748	MYOM2	P54296	1465 aa		31.27	■■■□□ 2.6
LIN54-208	ENST00000509748	STK26	Q9P289	416 aa		31.27	■■■□□ 2.6
LIN54-208	ENST00000509748	SHPRH	Q149N8	1683 aa		31.25	■■■□□ 2.59
LIN54-208	ENST00000509748	WAPL	Q7Z5K2	1190 aa		31.24	■■■□□ 2.59
LIN54-208	ENST00000509748	DDX17	Q92841	729 aa	Known RBP	31.24	■■■□□ 2.59
LIN54-208	ENST00000509748	SPATA31A6	Q5VVP1	1343 aa		31.24	■■■□□ 2.59
LIN54-208	ENST00000509748	KNDC1	Q76NI1	1749 aa		31.23	■■■□□ 2.59
LIN54-208	ENST00000509748	LRP6	O75581	1613 aa		31.23	■■■□□ 2.59
LIN54-208	ENST00000509748	YTHDC2	Q9H6S0	1430 aa	Known RBP	31.23	■■■□□ 2.59
LIN54-208	ENST00000509748	CFAP70	Q5T0N1	1121 aa		31.22	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms