RNA–Protein interactions for RNA: ENST00000503338.5

TOPBP1-202, Transcript of DNA topoisomerase II binding protein 1, humanhuman

TSL 3

Gene TOPBP1, Length 618 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-202ENST00000503338 NLRP1Q9C000 1473 aa11.41□□□□□ -0.58
TOPBP1-202ENST00000503338 DIEXFQ68CQ4 756 aaKnown RBP11.41□□□□□ -0.58
TOPBP1-202ENST00000503338 TRPM1Q7Z4N2 1603 aa11.41□□□□□ -0.58
TOPBP1-202ENST00000503338 MADDQ8WXG6 1647 aa11.41□□□□□ -0.58
TOPBP1-202ENST00000503338 FER1L4A9Z1Z3 1794 aa11.41□□□□□ -0.58
TOPBP1-202ENST00000503338 TMEM131LA2VDJ0 1609 aa11.4□□□□□ -0.58
TOPBP1-202ENST00000503338 SLC24A1O60721 1099 aa11.4□□□□□ -0.58
TOPBP1-202ENST00000503338 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.4□□□□□ -0.58
TOPBP1-202ENST00000503338 KIAA1210Q9ULL0 1709 aa11.4□□□□□ -0.58
TOPBP1-202ENST00000503338 IFT172Q9UG01 1749 aa11.39□□□□□ -0.59
TOPBP1-202ENST00000503338 KDM5AP29375 1690 aaKnown RBP11.39□□□□□ -0.59
TOPBP1-202ENST00000503338 NEXMIFQ5QGS0 1516 aa11.38□□□□□ -0.59
TOPBP1-202ENST00000503338 PPLO60437 1756 aa11.38□□□□□ -0.59
TOPBP1-202ENST00000503338 EIF3AQ14152 1382 aaKnown RBP11.38□□□□□ -0.59
TOPBP1-202ENST00000503338 A2ML1A8K2U0 1454 aa11.38□□□□□ -0.59
TOPBP1-202ENST00000503338 ADGRF5Q8IZF2 1346 aa11.37□□□□□ -0.59
TOPBP1-202ENST00000503338 PIK3C2GO75747 1445 aa11.37□□□□□ -0.59
TOPBP1-202ENST00000503338 C14orf93Q9H972 538 aaKnown RBP11.37□□□□□ -0.59
TOPBP1-202ENST00000503338 SCAF11Q99590 1463 aaKnown RBP11.36□□□□□ -0.59
TOPBP1-202ENST00000503338 SETBP1Q9Y6X0 1596 aa11.36□□□□□ -0.59
TOPBP1-202ENST00000503338 C3P01024 1663 aa11.36□□□□□ -0.59
TOPBP1-202ENST00000503338 ADAMTSL3P82987 1691 aa11.36□□□□□ -0.59
TOPBP1-202ENST00000503338 NBPF1Q3BBV0 1214 aa11.35□□□□□ -0.59
TOPBP1-202ENST00000503338 RIMS2Q9UQ26 1411 aa11.35□□□□□ -0.59
TOPBP1-202ENST00000503338 CFAP70Q5T0N1 1121 aa11.34□□□□□ -0.59
TOPBP1-202ENST00000503338 ST20-MTHFSA0A0A6YYL1 179 aa11.33□□□□□ -0.6
TOPBP1-202ENST00000503338 CEBPAP49715 358 aaPredicted RBP11.33□□□□□ -0.6
TOPBP1-202ENST00000503338 HIRIP3Q9BW71 556 aaPredicted RBP11.33□□□□□ -0.6
TOPBP1-202ENST00000503338 TMEM2Q9UHN6 1383 aa11.32□□□□□ -0.6
TOPBP1-202ENST00000503338 THEMISQ8N1K5 641 aaPredicted RBP11.32□□□□□ -0.6
TOPBP1-202ENST00000503338 CCDC7Q96M83 1385 aa11.31□□□□□ -0.6
TOPBP1-202ENST00000503338 RIMS1Q86UR5 1692 aaKnown RBP11.31□□□□□ -0.6
TOPBP1-202ENST00000503338 CDCA8Q53HL2 280 aa11.31□□□□□ -0.6
TOPBP1-202ENST00000503338 EID1Q9Y6B2 187 aa11.31□□□□□ -0.6
TOPBP1-202ENST00000503338 SETD1BQ9UPS6 1966 aaKnown RBP11.3□□□□□ -0.6
TOPBP1-202ENST00000503338 TMF1P82094 1093 aa11.3□□□□□ -0.6
TOPBP1-202ENST00000503338 WASHC2AQ641Q2 1341 aa11.3□□□□□ -0.6
TOPBP1-202ENST00000503338 MYO5BQ9ULV0 1848 aa11.3□□□□□ -0.6
TOPBP1-202ENST00000503338 UBR1Q8IWV7 1749 aa11.29□□□□□ -0.6
TOPBP1-202ENST00000503338 DDX10Q13206 875 aaKnown RBP11.29□□□□□ -0.6
TOPBP1-202ENST00000503338 IQGAP1P46940 1657 aa11.29□□□□□ -0.6
TOPBP1-202ENST00000503338 SLIT1O75093 1534 aa11.29□□□□□ -0.6
TOPBP1-202ENST00000503338 SBNO2Q9Y2G9 1366 aa11.28□□□□□ -0.6
TOPBP1-202ENST00000503338 ADGRB1O14514 1584 aa11.28□□□□□ -0.6
TOPBP1-202ENST00000503338 NUTM2DQ5VT03 806 aaPredicted RBP11.28□□□□□ -0.6
TOPBP1-202ENST00000503338 POLR1AO95602 1720 aaPredicted RBP11.28□□□□□ -0.6
TOPBP1-202ENST00000503338 KIF7Q2M1P5 1343 aa11.28□□□□□ -0.6
TOPBP1-202ENST00000503338 MYO3AQ8NEV4 1616 aa11.27□□□□□ -0.6
TOPBP1-202ENST00000503338 ARHGAP23Q9P227 1491 aa11.27□□□□□ -0.6
TOPBP1-202ENST00000503338 TESK2Q96S53 571 aa11.27□□□□□ -0.61
TOPBP1-202ENST00000503338 PLEKHG1Q9ULL1 1385 aa11.27□□□□□ -0.61
TOPBP1-202ENST00000503338 PTPRMP28827 1452 aa11.26□□□□□ -0.61
TOPBP1-202ENST00000503338 CEP170BQ9Y4F5 1589 aaPredicted RBP11.26□□□□□ -0.61
TOPBP1-202ENST00000503338 TXNDC2Q86VQ3 553 aa11.26□□□□□ -0.61
TOPBP1-202ENST00000503338 ALKQ9UM73 1620 aa11.26□□□□□ -0.61
TOPBP1-202ENST00000503338 CENPJQ9HC77 1338 aaPredicted RBP11.26□□□□□ -0.61
TOPBP1-202ENST00000503338 C11orf95C9JLR9 678 aaPredicted RBP11.25□□□□□ -0.61
TOPBP1-202ENST00000503338 ZNF142P52746 1687 aaPredicted RBP11.24□□□□□ -0.61
TOPBP1-202ENST00000503338 ADRA2BP18089 450 aa11.24□□□□□ -0.61
TOPBP1-202ENST00000503338 PUS7Q96PZ0 661 aaKnown RBP11.24□□□□□ -0.61
TOPBP1-202ENST00000503338 TRAK1Q9UPV9 953 aa11.24□□□□□ -0.61
TOPBP1-202ENST00000503338 YTHDC2Q9H6S0 1430 aaKnown RBP11.24□□□□□ -0.61
TOPBP1-202ENST00000503338 ANP32CO43423 234 aa11.23□□□□□ -0.61
TOPBP1-202ENST00000503338 TMEM132EQ6IEE7 984 aa11.23□□□□□ -0.61
TOPBP1-202ENST00000503338 SIRT1Q96EB6 747 aa11.23□□□□□ -0.61
TOPBP1-202ENST00000503338 BCANQ96GW7 911 aa11.23□□□□□ -0.61
TOPBP1-202ENST00000503338 LRPPRCP42704 1394 aaKnown RBP11.23□□□□□ -0.61
TOPBP1-202ENST00000503338 ABCC11Q96J66 1382 aa11.23□□□□□ -0.61
TOPBP1-202ENST00000503338 DIP2AQ14689 1571 aa11.22□□□□□ -0.61
TOPBP1-202ENST00000503338 ANKLE2Q86XL3 938 aa11.22□□□□□ -0.61
TOPBP1-202ENST00000503338 DLC1Q96QB1 1528 aa11.22□□□□□ -0.61
TOPBP1-202ENST00000503338 LTKP29376 864 aa11.21□□□□□ -0.61
TOPBP1-202ENST00000503338 TBX22Q9Y458 520 aa11.21□□□□□ -0.61
TOPBP1-202ENST00000503338 ASXL1Q8IXJ9 1541 aa11.2□□□□□ -0.62
TOPBP1-202ENST00000503338 EVC2Q86UK5 1308 aa11.2□□□□□ -0.62
TOPBP1-202ENST00000503338 POLR3GLQ9BT43 218 aa11.2□□□□□ -0.62
TOPBP1-202ENST00000503338 TECPR2O15040 1411 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 ADAMTS13Q76LX8 1427 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 PIK3R4Q99570 1358 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 DISP3Q9P2K9 1392 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 MIER1Q8N108 512 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 POGKQ9P215 609 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 NRXN3Q9Y4C0 1643 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 MED14O60244 1454 aa11.19□□□□□ -0.62
TOPBP1-202ENST00000503338 FAM135BQ49AJ0 1406 aa11.18□□□□□ -0.62
TOPBP1-202ENST00000503338 STK26Q9P289 416 aa11.18□□□□□ -0.62
TOPBP1-202ENST00000503338 SETD1AO15047 1707 aaKnown RBP11.18□□□□□ -0.62
TOPBP1-202ENST00000503338 ARHGEF28Q8N1W1 1705 aaKnown RBP11.18□□□□□ -0.62
TOPBP1-202ENST00000503338 METP08581 1390 aa11.17□□□□□ -0.62
TOPBP1-202ENST00000503338 NINLQ9Y2I6 1382 aa11.16□□□□□ -0.62
TOPBP1-202ENST00000503338 CCER2I3L3R5 266 aa11.16□□□□□ -0.62
TOPBP1-202ENST00000503338 PRAM1Q96QH2 718 aa11.16□□□□□ -0.62
TOPBP1-202ENST00000503338 QRICH2Q9H0J4 1663 aa11.16□□□□□ -0.62
TOPBP1-202ENST00000503338 KTN1Q86UP2 1357 aaKnown RBP11.16□□□□□ -0.62
TOPBP1-202ENST00000503338 KNDC1Q76NI1 1749 aa11.15□□□□□ -0.62
TOPBP1-202ENST00000503338 ATAD2Q6PL18 1390 aa11.15□□□□□ -0.63
TOPBP1-202ENST00000503338 CPS1P31327 1500 aa11.14□□□□□ -0.63
TOPBP1-202ENST00000503338 KDM4FA0A1W2PPD8 638 aa11.14□□□□□ -0.63
TOPBP1-202ENST00000503338 PTCH1Q13635 1447 aa11.13□□□□□ -0.63
TOPBP1-202ENST00000503338 SLC26A8Q96RN1 970 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms